Wall clock time and date at job start Tue Mar 31 2020 13:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00360 * 2 1 4 4 O 1.21635 * 119.99967 * 185.89508 * 3 2 1 5 5 C 1.47373 * 119.99456 * 5.88936 * 3 2 1 6 6 C 1.39257 * 120.29012 * 311.79282 * 5 3 2 7 7 C 1.38188 * 120.09231 * 180.27784 * 6 5 3 8 8 C 1.38842 * 120.67866 * 359.49361 * 7 6 5 9 9 C 1.37580 * 120.57843 * 0.51172 * 8 7 6 10 10 C 1.40714 * 119.88233 * 359.74758 * 9 8 7 11 11 C 1.40870 * 120.32911 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99735 * 149.77097 * 11 10 9 13 13 C 1.40268 * 119.99901 * 329.77383 * 11 10 9 14 14 N 1.30624 * 120.00394 * 344.85344 * 13 11 10 15 15 Si 1.86799 * 119.99844 * 164.85928 * 13 11 10 16 16 H 1.48498 * 109.47290 * 59.99906 * 15 13 11 17 17 H 1.48508 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47268 * 299.99885 * 15 13 11 19 19 C 1.39861 * 119.99837 * 179.97438 * 2 1 3 20 20 C 1.39463 * 119.74669 * 188.20444 * 19 2 1 21 21 C 1.36505 * 120.45112 * 179.69860 * 20 19 2 22 22 C 1.39701 * 119.86492 * 0.59899 * 21 20 19 23 23 C 1.46526 * 133.91063 * 179.70964 * 22 21 20 24 24 C 1.34223 * 107.01411 * 179.97438 * 23 22 21 25 25 N 1.36941 * 109.91907 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.07135 * 179.97438 * 25 24 23 27 27 C 1.37712 * 109.85745 * 359.97438 * 25 24 23 28 28 C 1.38405 * 119.74886 * 8.48485 * 19 2 1 29 29 H 1.09004 * 109.47236 * 85.59585 * 1 2 3 30 30 H 1.08998 * 109.47188 * 205.59671 * 1 2 3 31 31 H 1.09003 * 109.46793 * 325.59558 * 1 2 3 32 32 H 1.08006 * 119.95204 * 0.02562 * 6 5 3 33 33 H 1.07999 * 119.66154 * 179.74866 * 7 6 5 34 34 H 1.07997 * 119.71342 * 180.28312 * 8 7 6 35 35 H 1.08006 * 120.05823 * 179.77033 * 9 8 7 36 36 H 0.96999 * 120.00247 * 180.02562 * 14 13 11 37 37 H 1.07994 * 119.77476 * 359.97438 * 20 19 2 38 38 H 1.08000 * 120.06407 * 180.29408 * 21 20 19 39 39 H 1.07999 * 126.49386 * 0.02562 * 23 22 21 40 40 H 1.07997 * 125.04078 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.14039 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3504 1.1699 -0.1082 5 6 1.4078 2.4401 0.1310 6 6 0.2876 2.6910 -0.6573 7 6 -0.3915 3.8883 -0.5352 8 6 0.0244 4.8487 0.3771 9 6 1.1275 4.6300 1.1697 10 6 1.8400 3.4214 1.0614 11 6 2.9705 3.1874 1.8687 12 1 3.2230 2.1801 2.1653 13 6 3.7681 4.2626 2.2873 14 7 3.6531 5.4265 1.7057 15 14 4.9951 4.0300 3.6765 16 1 5.9762 2.9807 3.2999 17 1 5.7091 5.3081 3.9256 18 1 4.2759 3.6160 4.9080 19 6 2.1642 -1.2113 0.0005 20 6 3.5481 -1.2112 0.1733 21 6 4.2442 -2.3855 0.1824 22 6 3.5692 -3.5957 0.0051 23 6 3.9924 -4.9976 -0.0442 24 6 2.8881 -5.7346 -0.2414 25 7 1.7912 -4.9188 -0.3232 26 1 0.8806 -5.2217 -0.4637 27 6 2.1740 -3.6041 -0.1761 28 6 1.4783 -2.4003 -0.1762 29 1 -0.3634 0.0789 -1.0247 30 1 -0.3633 -0.9268 0.4440 31 1 -0.3633 0.8479 0.5807 32 1 -0.0486 1.9504 -1.3679 33 1 -1.2570 4.0773 -1.1529 34 1 -0.5206 5.7772 0.4629 35 1 1.4458 5.3844 1.8740 36 1 4.2049 6.1699 1.9949 37 1 4.0721 -0.2762 0.3053 38 1 5.3151 -2.3785 0.3214 39 1 5.0017 -5.3679 0.0594 40 1 2.8676 -6.8112 -0.3235 41 1 0.4071 -2.3931 -0.3145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449004587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:31 Heat of formation + Delta-G solvation = 51.678447 kcal Electronic energy + Delta-G solvation = -25898.961369 eV Core-core repulsion = 22323.021030 eV Total energy + Delta-G solvation = -3575.940339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24105 -41.28954 -39.08385 -37.70742 -36.18741 -35.51896 -32.69384 -31.93952 -31.46945 -30.33724 -29.14269 -27.93297 -27.20549 -24.57516 -23.54889 -22.92433 -22.30478 -21.49507 -20.55445 -19.21590 -18.93283 -17.96390 -17.85293 -17.20312 -16.74261 -16.29801 -16.23087 -15.71491 -15.33221 -14.98865 -14.81710 -14.75632 -14.51261 -14.40438 -14.11717 -13.94427 -13.80027 -13.57208 -13.27412 -13.04610 -12.89073 -12.77695 -12.66088 -12.58228 -12.21491 -11.90121 -11.70107 -11.47678 -11.13643 -11.02766 -10.25100 -10.12801 -9.38230 -9.34582 -8.88511 -8.74058 -8.30176 -6.42858 0.12776 0.56692 0.76421 1.00655 1.31329 1.42117 1.48295 1.77637 1.91208 2.11819 2.16467 2.44007 2.68687 3.01471 3.62442 3.75950 3.98900 4.07782 4.15751 4.31725 4.42175 4.43991 4.50626 4.57026 4.63203 4.68151 4.72183 4.85004 4.86019 5.05054 5.07170 5.13227 5.19243 5.28825 5.37747 5.51067 5.56586 5.70558 5.84342 5.88088 5.93950 5.97526 6.08652 6.24882 6.30619 6.45490 6.61144 6.81773 6.83393 6.90981 7.34071 8.23805 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.004016 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.214639 B = 6970.237583 C = 8565.866592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.557 5.557 3 C 0.573 3.427 4 O -0.550 6.550 5 C -0.274 4.274 6 C -0.054 4.054 7 C -0.234 4.234 8 C -0.089 4.089 9 C -0.181 4.181 10 C 0.122 3.878 11 C -0.471 4.471 12 H 0.057 0.943 13 C 0.042 3.958 14 N -0.813 5.813 15 Si 0.972 3.028 16 H -0.273 1.273 17 H -0.256 1.256 18 H -0.255 1.255 19 C 0.165 3.835 20 C -0.214 4.214 21 C -0.064 4.064 22 C -0.159 4.159 23 C -0.228 4.228 24 C 0.064 3.936 25 N -0.586 5.586 26 H 0.430 0.570 27 C 0.107 3.893 28 C -0.177 4.177 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.292 0.708 37 H 0.144 0.856 38 H 0.127 0.873 39 H 0.157 0.843 40 H 0.216 0.784 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 -17.361 -2.430 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.279 5.279 3 C 0.368 3.632 4 O -0.429 6.429 5 C -0.278 4.278 6 C -0.073 4.073 7 C -0.253 4.253 8 C -0.107 4.107 9 C -0.200 4.200 10 C 0.119 3.881 11 C -0.500 4.500 12 H 0.075 0.925 13 C -0.175 4.175 14 N -0.438 5.438 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.180 1.180 18 H -0.179 1.179 19 C 0.069 3.931 20 C -0.234 4.234 21 C -0.083 4.083 22 C -0.164 4.164 23 C -0.253 4.253 24 C -0.062 4.062 25 N -0.191 5.191 26 H 0.270 0.730 27 C -0.002 4.002 28 C -0.202 4.202 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.175 0.825 40 H 0.232 0.768 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.851 -17.090 -2.519 18.584 hybrid contribution 0.623 0.413 0.529 0.916 sum -6.227 -16.677 -1.990 17.913 Atomic orbital electron populations 1.22331 0.76368 1.04897 1.03799 1.45540 1.08849 1.03518 1.70022 1.18801 0.86470 0.84086 0.73846 1.90415 1.16083 1.86821 1.49578 1.19556 1.03910 0.96964 1.07419 1.21062 0.92333 0.97388 0.96471 1.20757 1.04268 0.95251 1.04981 1.21168 0.95595 0.98619 0.95329 1.21222 0.96790 0.98657 1.03357 1.17670 0.91007 0.90773 0.88682 1.19573 1.08690 0.94063 1.27682 0.92464 1.26641 0.99113 0.93773 0.97927 1.69723 1.35620 1.02899 1.35563 0.85417 0.77926 0.79022 0.78409 1.19801 1.17982 1.17875 1.17775 0.91420 0.85246 0.98633 1.21973 0.94244 1.01000 1.06181 1.20352 0.99770 0.90308 0.97884 1.19620 0.93350 0.94657 1.08761 1.21971 1.00129 0.89713 1.13469 1.22444 0.84512 0.97793 1.01431 1.41773 1.10687 1.02849 1.63776 0.72987 1.17882 0.93580 0.85896 1.02858 1.19572 1.00240 0.87743 1.12599 0.89881 0.88278 0.90200 0.85355 0.84837 0.86083 0.88060 0.89680 0.83916 0.85505 0.82493 0.76769 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.86 8.42 127.77 1.08 2.93 16 2 N -0.56 -21.69 3.10 -658.19 -2.04 -23.73 16 3 C 0.57 27.93 6.46 86.65 0.56 28.49 16 4 O -0.55 -30.80 12.27 -4.14 -0.05 -30.85 16 5 C -0.27 -13.41 5.00 -19.70 -0.10 -13.51 16 6 C -0.05 -2.17 7.69 22.50 0.17 -2.00 16 7 C -0.23 -8.94 10.03 22.40 0.22 -8.71 16 8 C -0.09 -3.76 10.01 22.26 0.22 -3.54 16 9 C -0.18 -9.20 8.65 22.72 0.20 -9.00 16 10 C 0.12 6.67 5.53 -21.11 -0.12 6.55 16 11 C -0.47 -27.01 7.82 23.41 0.18 -26.82 16 12 H 0.06 3.42 7.09 -2.91 -0.02 3.40 16 13 C 0.04 2.24 5.16 85.37 0.44 2.68 16 14 N -0.81 -43.51 11.19 21.88 0.24 -43.26 16 15 Si 0.97 41.17 29.59 68.60 2.03 43.20 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 18 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 19 C 0.17 6.27 6.48 38.20 0.25 6.52 16 20 C -0.21 -8.99 8.89 22.16 0.20 -8.80 16 21 C -0.06 -2.29 10.04 22.22 0.22 -2.07 16 22 C -0.16 -4.86 6.37 -20.17 -0.13 -4.99 16 23 C -0.23 -5.08 11.08 23.52 0.26 -4.82 16 24 C 0.06 0.99 11.82 82.98 0.98 1.97 16 25 N -0.59 -10.26 6.08 -187.57 -1.14 -11.40 16 26 H 0.43 4.31 8.96 -92.71 -0.83 3.48 16 27 C 0.11 2.91 7.27 39.01 0.28 3.19 16 28 C -0.18 -5.18 9.16 22.50 0.21 -4.98 16 29 H 0.08 1.89 7.12 -2.38 -0.02 1.88 16 30 H 0.10 2.11 6.32 -2.39 -0.02 2.10 16 31 H 0.08 2.42 6.10 -2.39 -0.01 2.40 16 32 H 0.13 4.22 6.20 -2.91 -0.02 4.20 16 33 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.10 5.37 6.50 -2.91 -0.02 5.35 16 36 H 0.29 14.09 8.29 -92.71 -0.77 13.32 16 37 H 0.14 7.15 4.68 -49.71 -0.23 6.92 16 38 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.22 1.13 8.06 -2.91 -0.02 1.10 16 41 H 0.15 3.31 6.27 -2.91 -0.02 3.29 16 Total: -1.00 -74.51 337.26 4.22 -70.29 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.05 Total: 32.65 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 5.13 Total: -36.90 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.93 Total: -78.39 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.05 Total: -30.85 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -74.51 4.22 -70.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449004587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.967 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds