Wall clock time and date at job start Tue Mar 31 2020 12:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47601 * 2 1 4 4 C 1.46493 * 120.00282 * 270.00401 * 3 2 1 5 5 C 1.50703 * 109.47021 * 269.99919 * 4 3 2 6 6 H 1.07993 * 120.00060 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00059 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99668 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99868 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47226 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46787 * 119.99870 * 9 7 5 12 12 H 1.48497 * 109.47099 * 239.99646 * 9 7 5 13 13 C 1.34784 * 119.99891 * 89.99951 * 3 2 1 14 14 O 1.21273 * 120.00228 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99425 * 0.02562 * 13 3 2 16 16 N 1.46504 * 109.46696 * 179.97438 * 15 13 3 17 17 C 1.35437 * 119.98249 * 270.00232 * 16 15 13 18 18 N 1.30379 * 123.32438 * 180.02562 * 17 16 15 19 19 C 1.33574 * 121.83436 * 359.97438 * 18 17 16 20 20 O 1.33868 * 136.05561 * 180.02562 * 19 18 17 21 21 N 1.21002 * 112.99970 * 180.02562 * 20 19 18 22 22 C 1.30394 * 113.18497 * 359.97438 * 21 20 19 23 23 C 1.50708 * 127.41000 * 179.97438 * 22 21 20 24 24 C 1.40612 * 118.70453 * 0.02562 * 19 18 17 25 25 C 1.35649 * 119.98180 * 89.99855 * 16 15 13 26 26 O 1.21840 * 121.38927 * 359.97438 * 25 16 15 27 27 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46686 * 299.99928 * 1 2 3 29 29 H 1.08999 * 109.46834 * 59.99308 * 1 2 3 30 30 H 1.09006 * 109.46686 * 240.00072 * 2 1 3 31 31 H 1.08999 * 109.46834 * 120.00692 * 2 1 3 32 32 H 1.09003 * 109.47176 * 29.99693 * 4 3 2 33 33 H 1.08996 * 109.47321 * 149.99819 * 4 3 2 34 34 H 0.97004 * 119.99245 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47662 * 60.00037 * 15 13 3 36 36 H 1.09003 * 109.47371 * 299.99375 * 15 13 3 37 37 H 1.07992 * 118.33464 * 359.97438 * 17 16 15 38 38 H 1.09006 * 109.46993 * 270.02815 * 23 22 21 39 39 H 1.08998 * 109.47051 * 30.02624 * 23 22 21 40 40 H 1.08993 * 109.46966 * 150.02636 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1266 -3.6175 9 14 5.9139 2.0973 -3.4163 10 1 6.6015 1.2420 -2.4159 11 1 5.9218 1.4189 -4.7372 12 1 6.6212 3.3986 -3.5240 13 6 2.2431 2.0165 1.1673 14 8 2.6470 3.1600 1.1673 15 6 1.9924 1.3057 2.4723 16 7 2.3103 2.2031 3.5859 17 6 3.5631 2.2265 4.0998 18 7 3.9170 2.9981 5.0894 19 6 3.0546 3.8334 5.6749 20 8 3.1017 4.7228 6.6743 21 7 2.0413 5.2724 6.8683 22 6 1.0999 4.8719 6.0597 23 6 -0.3322 5.3394 6.0191 24 6 1.7300 3.8751 5.2050 25 6 1.3496 3.0100 4.1017 26 8 0.2148 3.0094 3.6581 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6877 -2.0283 33 1 2.0957 3.1410 -1.1383 34 1 3.6757 3.5171 -4.4434 35 1 2.6228 0.4185 2.5299 36 1 0.9445 1.0113 2.5303 37 1 4.3063 1.5724 3.6685 38 1 -0.9370 4.7151 6.6770 39 1 -0.3857 6.3760 6.3516 40 1 -0.7099 5.2650 4.9993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459150705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:34 Heat of formation + Delta-G solvation = 8.590386 kcal Electronic energy + Delta-G solvation = -27101.968418 eV Core-core repulsion = 23113.310377 eV Total energy + Delta-G solvation = -3988.658040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -45.98705 -42.64083 -40.55281 -38.98116 -37.11108 -36.25862 -35.60555 -34.87498 -31.94973 -31.67831 -30.69218 -29.83770 -28.50695 -26.32587 -25.88241 -24.71437 -24.03339 -22.54855 -20.62222 -20.28784 -19.71539 -19.17253 -18.66351 -18.52867 -18.20518 -17.26341 -16.66292 -16.54410 -16.39896 -16.18351 -15.74645 -15.51308 -14.79395 -14.65230 -14.56439 -14.50514 -14.41894 -14.05314 -13.85889 -13.65912 -13.38982 -13.23031 -13.00660 -12.79942 -12.69522 -12.50225 -12.16267 -12.05819 -11.85828 -11.76490 -11.66057 -11.30990 -11.28090 -10.70844 -10.64217 -9.80919 -9.50161 -8.21184 -6.35796 -0.78980 0.13217 0.80989 0.90858 1.09010 1.40047 1.42556 1.53671 1.66064 2.01925 2.31317 2.45606 2.62124 2.89105 3.10181 3.23452 3.31271 3.45559 3.56752 3.74666 3.93574 4.07219 4.25745 4.32863 4.44774 4.53414 4.60712 4.66931 4.85411 4.97269 5.00572 5.01923 5.06928 5.07249 5.23415 5.42985 5.57840 5.81898 6.05394 6.22172 6.34831 6.65786 6.76508 6.90853 7.24360 7.39312 8.86644 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.003534 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.153896 B = 7922.096283 C = 8633.438940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.592 5.592 4 C 0.262 3.738 5 C -0.535 4.535 6 H 0.068 0.932 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.969 3.031 10 H -0.255 1.255 11 H -0.274 1.274 12 H -0.289 1.289 13 C 0.483 3.517 14 O -0.593 6.593 15 C 0.082 3.918 16 N -0.516 5.516 17 C 0.448 3.552 18 N -0.525 5.525 19 C 0.259 3.741 20 O 0.095 5.905 21 N -0.360 5.360 22 C 0.108 3.892 23 C -0.076 4.076 24 C -0.367 4.367 25 C 0.577 3.423 26 O -0.533 6.533 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.021 0.979 33 H -0.012 1.012 34 H 0.265 0.735 35 H 0.196 0.804 36 H 0.144 0.856 37 H 0.277 0.723 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 -10.286 17.458 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.323 5.323 4 C 0.141 3.859 5 C -0.574 4.574 6 H 0.086 0.914 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.793 3.207 10 H -0.179 1.179 11 H -0.200 1.200 12 H -0.216 1.216 13 C 0.270 3.730 14 O -0.474 6.474 15 C -0.042 4.042 16 N -0.234 5.234 17 C 0.165 3.835 18 N -0.254 5.254 19 C 0.084 3.916 20 O 0.044 5.956 21 N -0.075 5.075 22 C -0.056 4.056 23 C -0.133 4.133 24 C -0.378 4.378 25 C 0.372 3.628 26 O -0.408 6.408 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.140 0.860 32 H 0.039 0.961 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.213 0.787 36 H 0.162 0.838 37 H 0.292 0.708 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.302 -8.623 18.411 20.597 hybrid contribution -0.225 0.377 -1.830 1.882 sum -3.527 -8.246 16.581 18.852 Atomic orbital electron populations 1.22209 0.95404 1.03634 1.01312 1.21934 0.94673 0.80703 1.05384 1.48230 1.62914 1.15421 1.05725 1.18712 0.95723 0.91166 0.80312 1.21765 0.97525 1.31715 1.06380 0.91410 1.25917 1.02379 0.94562 0.96682 1.70087 1.37883 1.34507 1.14885 0.85346 0.78973 0.77813 0.78558 1.17902 1.19962 1.21576 1.21290 0.78098 0.86835 0.86807 1.90728 1.48400 1.20454 1.87830 1.22352 1.08968 0.92719 0.80140 1.46548 1.11195 1.35620 1.30065 1.26227 0.84530 0.89316 0.83477 1.67157 1.32803 1.11184 1.14267 1.22061 0.89930 0.90578 0.89019 1.84725 1.28772 1.40753 1.41331 1.73850 0.92199 1.18385 1.23029 1.24437 0.98877 0.92348 0.89954 1.20420 0.84666 1.03352 1.04834 1.22843 0.97423 1.10555 1.06962 1.17056 0.84842 0.79311 0.81564 1.90870 1.20062 1.67233 1.62683 0.88188 0.92640 0.94941 0.90145 0.86050 0.96125 0.99370 0.92651 0.78702 0.83822 0.70799 0.87261 0.88146 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 10.24 71.98 0.74 -2.77 16 2 C 0.09 2.18 5.93 86.38 0.51 2.69 16 3 N -0.59 -21.49 2.46 -826.16 -2.03 -23.52 16 4 C 0.26 13.28 5.16 85.64 0.44 13.72 16 5 C -0.54 -28.50 9.39 25.60 0.24 -28.26 16 6 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 7 C 0.00 0.17 5.46 84.66 0.46 0.64 16 8 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 9 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.48 16.88 7.74 87.66 0.68 17.56 16 14 O -0.59 -28.23 16.01 -3.01 -0.05 -28.28 16 15 C 0.08 1.60 4.42 85.63 0.38 1.98 16 16 N -0.52 -12.13 2.09 -653.32 -1.37 -13.49 16 17 C 0.45 8.30 11.41 180.17 2.06 10.35 16 18 N -0.52 -12.67 10.36 -311.35 -3.23 -15.89 16 19 C 0.26 7.42 8.82 85.01 0.75 8.17 16 20 O 0.09 2.75 11.10 73.15 0.81 3.56 16 21 N -0.36 -10.38 11.98 -44.03 -0.53 -10.90 16 22 C 0.11 3.01 7.56 44.69 0.34 3.35 16 23 C -0.08 -1.56 10.50 71.24 0.75 -0.81 16 24 C -0.37 -11.16 6.76 -18.98 -0.13 -11.29 16 25 C 0.58 17.89 7.64 85.91 0.66 18.55 16 26 O -0.53 -19.06 16.89 -4.80 -0.08 -19.14 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.14 7.22 -2.38 -0.02 1.12 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 2.02 8.07 -2.38 -0.02 2.00 16 31 H 0.12 1.44 6.44 -2.39 -0.02 1.42 16 32 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 33 H -0.01 -0.72 7.42 -2.39 -0.02 -0.74 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.20 1.14 7.26 -2.39 -0.02 1.12 16 36 H 0.14 2.53 6.54 -2.39 -0.02 2.51 16 37 H 0.28 1.74 7.99 -2.91 -0.02 1.72 16 38 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -86.77 351.92 4.80 -81.97 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.09 Total: 2.30 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 7.87 Total: 33.89 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -6.86 Total: -118.96 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: 0.68 Total: -43.86 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -86.77 4.80 -81.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459150705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.560 kcal (2) G-P(sol) polarization free energy of solvation -86.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds