Wall clock time and date at job start Tue Mar 31 2020 12:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47685 * 2 1 4 4 C 1.53001 * 109.46828 * 239.99887 * 2 1 3 5 5 N 1.46503 * 109.46919 * 185.00331 * 4 2 1 6 6 C 1.46498 * 119.99997 * 269.99802 * 5 4 2 7 7 C 1.36935 * 120.00263 * 90.00192 * 5 4 2 8 8 H 1.07998 * 120.00437 * 22.33397 * 7 5 4 9 9 C 1.38811 * 119.99878 * 202.33916 * 7 5 4 10 10 N 1.31612 * 120.00436 * 11.36248 * 9 7 5 11 11 Si 1.86809 * 119.99942 * 191.36153 * 9 7 5 12 12 H 1.48500 * 109.46855 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47190 * 119.99804 * 11 9 7 14 14 H 1.48493 * 109.47175 * 239.99833 * 11 9 7 15 15 N 1.46506 * 109.47176 * 120.00196 * 2 1 3 16 16 C 1.34779 * 119.99773 * 274.71881 * 15 2 1 17 17 O 1.21621 * 120.00038 * 0.27724 * 16 15 2 18 18 C 1.47341 * 119.99837 * 180.27477 * 16 15 2 19 19 N 1.35215 * 126.56036 * 0.02562 * 18 16 15 20 20 C 1.29994 * 108.83984 * 179.97438 * 19 18 16 21 21 O 1.33994 * 109.70565 * 0.02562 * 20 19 18 22 22 C 1.34779 * 108.10250 * 359.74526 * 21 20 19 23 23 C 1.47765 * 126.76429 * 180.28048 * 22 21 20 24 24 C 1.42480 * 126.97245 * 0.12984 * 23 22 21 25 25 C 1.35181 * 103.92939 * 179.97438 * 24 23 22 26 26 O 1.34064 * 106.73798 * 359.97438 * 25 24 23 27 27 N 1.20902 * 111.90525 * 359.74535 * 26 25 24 28 28 H 1.08997 * 109.47493 * 59.99549 * 1 2 3 29 29 H 1.08998 * 109.47564 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47127 * 300.00353 * 1 2 3 31 31 H 1.09006 * 109.47138 * 304.99564 * 4 2 1 32 32 H 1.08991 * 109.47335 * 65.00412 * 4 2 1 33 33 H 1.08998 * 109.47270 * 94.22042 * 6 5 4 34 34 H 1.08999 * 109.47161 * 214.22797 * 6 5 4 35 35 H 1.09001 * 109.46757 * 334.22651 * 6 5 4 36 36 H 0.97007 * 120.00681 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00340 * 94.99788 * 15 2 1 38 38 H 1.08002 * 125.14700 * 180.02562 * 20 19 18 39 39 H 1.08001 * 128.03185 * 359.92654 * 24 23 22 40 40 H 1.07994 * 126.62780 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.4999 -0.8265 -1.1906 6 6 4.3343 0.2338 -1.7613 7 6 4.0848 -1.9160 -0.6023 8 1 3.5337 -2.8400 -0.5086 9 6 5.3861 -1.8327 -0.1264 10 7 5.9793 -0.6615 -0.0337 11 14 6.2955 -3.3831 0.3827 12 1 5.4145 -4.5617 0.1830 13 1 7.5187 -3.5340 -0.4455 14 1 6.6762 -3.2859 1.8148 15 7 2.0183 -0.6907 1.1962 16 6 2.1524 -0.0169 2.3558 17 8 1.8632 1.1631 2.4104 18 6 2.6493 -0.7101 3.5573 19 7 3.0080 -2.0107 3.6463 20 6 3.3944 -2.2573 4.8627 21 8 3.3024 -1.1427 5.6007 22 6 2.8431 -0.1531 4.8093 23 6 2.5935 1.2494 5.2016 24 6 2.7918 1.8275 6.4887 25 6 2.4228 3.1178 6.3264 26 8 2.0470 3.2537 5.0467 27 7 2.1503 2.2168 4.4336 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6052 -1.7199 -1.2951 32 1 1.7516 -0.1584 -2.1369 33 1 4.6022 0.9454 -0.9803 34 1 5.2403 -0.2031 -2.1812 35 1 3.7810 0.7482 -2.5471 36 1 6.8886 -0.6032 0.2992 37 1 2.2490 -1.6318 1.1527 38 1 3.7376 -3.2155 5.2239 39 1 3.1524 1.3462 7.3859 40 1 2.4303 3.8899 7.0813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498426848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:18 Heat of formation + Delta-G solvation = 98.522506 kcal Electronic energy + Delta-G solvation = -27805.947937 eV Core-core repulsion = 23821.189646 eV Total energy + Delta-G solvation = -3984.758291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.90154 -43.21013 -38.86755 -36.22931 -34.81145 -34.39174 -33.81177 -31.78177 -31.22861 -30.16369 -29.48345 -26.10688 -25.52847 -24.78199 -23.81800 -22.52894 -21.93249 -21.24461 -20.10886 -19.53852 -18.51636 -17.58807 -17.50594 -16.60407 -16.59855 -16.07996 -15.50661 -15.16577 -14.76107 -14.43239 -14.09977 -13.64721 -13.53956 -13.29981 -13.14415 -12.95684 -12.74226 -12.12900 -11.84552 -11.37260 -11.29973 -11.22534 -11.16756 -10.95900 -10.80260 -10.63810 -10.60145 -10.32385 -10.17334 -9.95021 -9.75521 -9.75345 -9.28315 -8.54620 -8.49593 -8.08646 -6.70268 -5.66443 -3.11822 0.74328 1.58850 2.29331 2.33045 2.60571 3.26525 3.39197 3.46124 3.48064 3.72027 4.03311 4.13042 4.28227 4.51029 4.54479 5.02071 5.14221 5.22814 5.29438 5.42981 5.57883 5.61484 5.74951 5.79517 5.85585 5.95686 6.06351 6.21729 6.25626 6.33573 6.52979 6.60270 6.81125 6.96478 7.36526 7.44796 7.58015 7.79379 7.86704 8.30654 8.42077 8.44815 9.02244 9.28362 9.92233 10.41493 11.38122 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.005297 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.872066 B = 5285.046471 C = 6364.639927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.165 3.835 7 C -0.251 4.251 8 H 0.067 0.933 9 C 0.009 3.991 10 N -0.901 5.901 11 Si 0.899 3.101 12 H -0.277 1.277 13 H -0.292 1.292 14 H -0.292 1.292 15 N -0.669 5.669 16 C 0.586 3.414 17 O -0.519 6.519 18 C -0.001 4.001 19 N -0.447 5.447 20 C 0.181 3.819 21 O -0.191 6.191 22 C 0.072 3.928 23 C 0.060 3.940 24 C -0.213 4.213 25 C -0.072 4.072 26 O 0.123 5.877 27 N -0.256 5.256 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.044 0.956 35 H -0.005 1.005 36 H 0.249 0.751 37 H 0.411 0.589 38 H 0.258 0.742 39 H 0.174 0.826 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.138 2.367 13.116 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.380 4.380 8 H 0.085 0.915 9 C -0.190 4.190 10 N -0.546 5.546 11 Si 0.729 3.271 12 H -0.202 1.202 13 H -0.219 1.219 14 H -0.220 1.220 15 N -0.318 5.318 16 C 0.369 3.631 17 O -0.395 6.395 18 C -0.126 4.126 19 N -0.175 5.175 20 C -0.046 4.046 21 O -0.077 6.077 22 C 0.016 3.984 23 C -0.095 4.095 24 C -0.235 4.235 25 C -0.152 4.152 26 O 0.043 5.957 27 N 0.048 4.952 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.014 0.986 36 H 0.059 0.941 37 H 0.248 0.752 38 H 0.274 0.726 39 H 0.192 0.808 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.508 2.800 11.359 14.465 hybrid contribution 1.417 -1.301 1.969 2.753 sum -7.091 1.499 13.328 15.171 Atomic orbital electron populations 1.22151 0.96835 1.01242 1.01543 1.21872 0.91829 0.98418 0.86773 0.90407 1.21194 0.86032 0.97901 0.93502 1.43919 0.98888 1.22675 1.66595 1.20782 0.92932 0.90456 0.93784 1.19104 0.97015 0.89387 1.32542 0.91505 1.24961 0.98719 0.96090 0.99233 1.70092 1.13167 1.21573 1.49767 0.86265 0.79833 0.83212 0.77773 1.20199 1.21934 1.21962 1.45523 1.63853 1.14649 1.07822 1.16669 0.78678 0.85905 0.81853 1.90886 1.50741 1.13749 1.84097 1.22213 1.05444 0.90063 0.94920 1.70553 1.13398 1.14644 1.18898 1.28127 1.00492 0.90774 0.85249 1.84324 1.64404 1.18479 1.40506 1.19652 1.03050 0.86926 0.88794 1.20166 1.07108 0.90720 0.91550 1.22757 1.07607 0.94494 0.98626 1.25917 1.02042 0.98921 0.88306 1.85047 1.61431 1.29676 1.19516 1.75165 1.12824 0.91338 1.15843 0.92198 0.93043 0.92949 0.93331 0.92895 0.95499 0.93730 0.98605 0.94065 0.75239 0.72616 0.80839 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.49 37.15 0.35 -2.24 16 2 C 0.12 2.39 2.88 -67.93 -0.20 2.19 16 3 H 0.08 1.78 7.57 -51.93 -0.39 1.38 16 4 C 0.14 2.89 5.36 -4.04 -0.02 2.87 16 5 N -0.60 -14.93 2.82 -181.12 -0.51 -15.44 16 6 C 0.17 4.19 9.01 59.85 0.54 4.73 16 7 C -0.25 -6.71 8.02 -15.06 -0.12 -6.83 16 8 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 9 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 10 N -0.90 -26.71 10.59 55.49 0.59 -26.13 16 11 Si 0.90 22.08 29.57 -169.99 -5.03 17.05 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 15 N -0.67 -14.48 4.48 -54.91 -0.25 -14.73 16 16 C 0.59 13.22 7.78 -12.56 -0.10 13.12 16 17 O -0.52 -12.42 13.07 5.26 0.07 -12.35 16 18 C 0.00 -0.03 7.05 -82.62 -0.58 -0.61 16 19 N -0.45 -8.34 11.00 -11.16 -0.12 -8.46 16 20 C 0.18 2.52 13.16 51.98 0.68 3.20 16 21 O -0.19 -2.86 10.75 5.21 0.06 -2.80 16 22 C 0.07 1.32 7.37 -35.63 -0.26 1.05 16 23 C 0.06 1.03 7.12 -82.60 -0.59 0.44 16 24 C -0.21 -2.51 11.15 -39.04 -0.44 -2.95 16 25 C -0.07 -0.70 12.27 29.64 0.36 -0.34 16 26 O 0.12 1.77 11.17 17.12 0.19 1.97 16 27 N -0.26 -4.75 8.71 33.27 0.29 -4.47 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 32 H 0.05 0.97 7.86 -51.93 -0.41 0.57 16 33 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 34 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 35 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.41 9.10 7.13 -40.82 -0.29 8.81 16 38 H 0.26 2.00 8.06 -52.49 -0.42 1.58 16 39 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -35.89 347.07 -4.70 -40.58 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.76 Total: 4.75 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -0.45 Total: 14.80 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: 0.00 Total: -69.22 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.32 Total: -13.19 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.89 -4.70 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498426848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.103 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds