Wall clock time and date at job start Tue Mar 31 2020 12:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47685 * 2 1 4 4 C 1.53001 * 109.46828 * 239.99887 * 2 1 3 5 5 N 1.46503 * 109.46919 * 185.00331 * 4 2 1 6 6 C 1.46498 * 119.99997 * 269.99802 * 5 4 2 7 7 C 1.36935 * 120.00263 * 90.00192 * 5 4 2 8 8 H 1.07998 * 120.00437 * 22.33397 * 7 5 4 9 9 C 1.38811 * 119.99878 * 202.33916 * 7 5 4 10 10 N 1.31612 * 120.00436 * 11.36248 * 9 7 5 11 11 Si 1.86809 * 119.99942 * 191.36153 * 9 7 5 12 12 H 1.48500 * 109.46855 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47190 * 119.99804 * 11 9 7 14 14 H 1.48493 * 109.47175 * 239.99833 * 11 9 7 15 15 N 1.46506 * 109.47176 * 120.00196 * 2 1 3 16 16 C 1.34779 * 119.99773 * 274.71881 * 15 2 1 17 17 O 1.21621 * 120.00038 * 0.27724 * 16 15 2 18 18 C 1.47341 * 119.99837 * 180.27477 * 16 15 2 19 19 N 1.35215 * 126.56036 * 0.02562 * 18 16 15 20 20 C 1.29994 * 108.83984 * 179.97438 * 19 18 16 21 21 O 1.33994 * 109.70565 * 0.02562 * 20 19 18 22 22 C 1.34779 * 108.10250 * 359.74526 * 21 20 19 23 23 C 1.47765 * 126.76429 * 180.28048 * 22 21 20 24 24 C 1.42480 * 126.97245 * 0.12984 * 23 22 21 25 25 C 1.35181 * 103.92939 * 179.97438 * 24 23 22 26 26 O 1.34064 * 106.73798 * 359.97438 * 25 24 23 27 27 N 1.20902 * 111.90525 * 359.74535 * 26 25 24 28 28 H 1.08997 * 109.47493 * 59.99549 * 1 2 3 29 29 H 1.08998 * 109.47564 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47127 * 300.00353 * 1 2 3 31 31 H 1.09006 * 109.47138 * 304.99564 * 4 2 1 32 32 H 1.08991 * 109.47335 * 65.00412 * 4 2 1 33 33 H 1.08998 * 109.47270 * 94.22042 * 6 5 4 34 34 H 1.08999 * 109.47161 * 214.22797 * 6 5 4 35 35 H 1.09001 * 109.46757 * 334.22651 * 6 5 4 36 36 H 0.97007 * 120.00681 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00340 * 94.99788 * 15 2 1 38 38 H 1.08002 * 125.14700 * 180.02562 * 20 19 18 39 39 H 1.08001 * 128.03185 * 359.92654 * 24 23 22 40 40 H 1.07994 * 126.62780 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.4999 -0.8265 -1.1906 6 6 4.3343 0.2338 -1.7613 7 6 4.0848 -1.9160 -0.6023 8 1 3.5337 -2.8400 -0.5086 9 6 5.3861 -1.8327 -0.1264 10 7 5.9793 -0.6615 -0.0337 11 14 6.2955 -3.3831 0.3827 12 1 5.4145 -4.5617 0.1830 13 1 7.5187 -3.5340 -0.4455 14 1 6.6762 -3.2859 1.8148 15 7 2.0183 -0.6907 1.1962 16 6 2.1524 -0.0169 2.3558 17 8 1.8632 1.1631 2.4104 18 6 2.6493 -0.7101 3.5573 19 7 3.0080 -2.0107 3.6463 20 6 3.3944 -2.2573 4.8627 21 8 3.3024 -1.1427 5.6007 22 6 2.8431 -0.1531 4.8093 23 6 2.5935 1.2494 5.2016 24 6 2.7918 1.8275 6.4887 25 6 2.4228 3.1178 6.3264 26 8 2.0470 3.2537 5.0467 27 7 2.1503 2.2168 4.4336 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6052 -1.7199 -1.2951 32 1 1.7516 -0.1584 -2.1369 33 1 4.6022 0.9454 -0.9803 34 1 5.2403 -0.2031 -2.1812 35 1 3.7810 0.7482 -2.5471 36 1 6.8886 -0.6032 0.2992 37 1 2.2490 -1.6318 1.1527 38 1 3.7376 -3.2155 5.2239 39 1 3.1524 1.3462 7.3859 40 1 2.4303 3.8899 7.0813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498426848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:16 Heat of formation + Delta-G solvation = 70.123362 kcal Electronic energy + Delta-G solvation = -27807.179416 eV Core-core repulsion = 23821.189646 eV Total energy + Delta-G solvation = -3985.989770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -46.02353 -44.46126 -40.52818 -38.03742 -36.11364 -35.78856 -35.38053 -33.15981 -32.80485 -31.79504 -30.84831 -28.05924 -27.39197 -26.17124 -24.98913 -23.78517 -23.42751 -22.77114 -21.53835 -21.16249 -19.72391 -18.91896 -18.75997 -18.47563 -17.84322 -17.38190 -17.11300 -16.79634 -16.29984 -15.84693 -15.55840 -15.46852 -15.03715 -14.83147 -14.53697 -14.47011 -14.10425 -13.87441 -13.41484 -13.12296 -12.89601 -12.75395 -12.58008 -12.54708 -12.39408 -12.17663 -12.16334 -11.96788 -11.94158 -11.87152 -11.69047 -10.94524 -10.69406 -10.61769 -9.96751 -9.64597 -8.77090 -7.78474 -5.25155 -0.54697 0.73039 1.04554 1.09789 1.40740 1.43789 1.44935 1.55143 2.19288 2.45660 2.47735 2.53043 3.06538 3.15049 3.36939 3.39418 3.67767 3.78920 4.01369 4.11233 4.19871 4.36941 4.41720 4.48031 4.52565 4.72410 4.73502 4.82324 4.88160 4.96388 5.03283 5.03961 5.15917 5.31407 5.37129 5.64704 5.72135 5.74341 6.28349 6.34433 6.74929 7.17269 7.28403 7.37883 7.89458 8.34365 9.25484 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.005297 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.872066 B = 5285.046471 C = 6364.639927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.121 3.879 3 H 0.042 0.958 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.181 3.819 7 C -0.241 4.241 8 H 0.076 0.924 9 C -0.048 4.048 10 N -0.938 5.938 11 Si 0.957 3.043 12 H -0.259 1.259 13 H -0.299 1.299 14 H -0.298 1.298 15 N -0.672 5.672 16 C 0.573 3.427 17 O -0.544 6.544 18 C -0.047 4.047 19 N -0.489 5.489 20 C 0.208 3.792 21 O -0.178 6.178 22 C 0.074 3.926 23 C 0.021 3.979 24 C -0.213 4.213 25 C -0.043 4.043 26 O 0.121 5.879 27 N -0.313 5.313 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.079 0.921 33 H -0.012 1.012 34 H 0.020 0.980 35 H 0.030 0.970 36 H 0.239 0.761 37 H 0.407 0.593 38 H 0.317 0.683 39 H 0.206 0.794 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 1.353 14.888 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.014 3.986 3 H 0.060 0.940 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.036 3.964 7 C -0.371 4.371 8 H 0.093 0.907 9 C -0.243 4.243 10 N -0.586 5.586 11 Si 0.787 3.213 12 H -0.182 1.182 13 H -0.226 1.226 14 H -0.226 1.226 15 N -0.321 5.321 16 C 0.358 3.642 17 O -0.422 6.422 18 C -0.170 4.170 19 N -0.216 5.216 20 C -0.019 4.019 21 O -0.064 6.064 22 C 0.017 3.983 23 C -0.134 4.134 24 C -0.235 4.235 25 C -0.123 4.123 26 O 0.039 5.961 27 N -0.009 5.009 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.006 0.994 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.243 0.757 38 H 0.331 0.669 39 H 0.223 0.777 40 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -9.434 1.749 13.096 16.235 hybrid contribution 1.637 -0.927 1.507 2.411 sum -7.797 0.823 14.603 16.575 Atomic orbital electron populations 1.22008 0.93552 1.02534 1.02143 1.21810 0.94288 0.96191 0.86320 0.93967 1.21401 0.83324 0.99331 0.94434 1.44155 1.00868 1.22057 1.66372 1.20472 0.92792 0.89848 0.93283 1.19398 0.96859 0.90098 1.30712 0.90682 1.25662 0.99873 0.98445 1.00275 1.70298 1.12855 1.23604 1.51815 0.85330 0.78541 0.80785 0.76692 1.18243 1.22604 1.22554 1.45596 1.63993 1.14344 1.08158 1.17090 0.78412 0.85922 0.82775 1.90856 1.51855 1.14722 1.84746 1.22047 1.08314 0.91428 0.95184 1.70471 1.15669 1.14028 1.21459 1.29436 0.96945 0.91678 0.83832 1.84360 1.63998 1.18203 1.39823 1.19927 1.01940 0.88030 0.88443 1.20606 1.08564 0.90328 0.93856 1.23171 1.07727 0.94977 0.97607 1.27021 0.98593 0.99641 0.87020 1.84967 1.61087 1.28415 1.21581 1.75178 1.14945 0.92684 1.18059 0.89479 0.91309 0.94429 0.91572 0.90272 0.99409 0.96137 0.95165 0.95159 0.75699 0.66905 0.77677 0.70599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.49 71.98 0.68 -3.87 16 2 C 0.12 4.93 2.88 44.99 0.13 5.06 16 3 H 0.04 2.01 7.57 -2.39 -0.02 1.99 16 4 C 0.14 5.61 5.36 86.38 0.46 6.08 16 5 N -0.61 -30.65 2.82 -726.94 -2.05 -32.70 16 6 C 0.18 9.42 9.01 127.77 1.15 10.57 16 7 C -0.24 -12.88 8.02 84.03 0.67 -12.21 16 8 H 0.08 3.86 7.84 -2.91 -0.02 3.83 16 9 C -0.05 -2.71 5.13 84.86 0.44 -2.27 16 10 N -0.94 -57.75 10.59 21.65 0.23 -57.52 16 11 Si 0.96 45.79 29.57 68.60 2.03 47.81 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 15 N -0.67 -30.03 4.48 -445.87 -2.00 -32.03 16 16 C 0.57 27.25 7.78 86.64 0.67 27.93 16 17 O -0.54 -27.73 13.07 -4.10 -0.05 -27.78 16 18 C -0.05 -1.98 7.05 41.06 0.29 -1.69 16 19 N -0.49 -18.22 11.00 -304.12 -3.35 -21.56 16 20 C 0.21 5.39 13.16 130.51 1.72 7.11 16 21 O -0.18 -5.08 10.75 -4.26 -0.05 -5.12 16 22 C 0.07 2.74 7.37 24.83 0.18 2.92 16 23 C 0.02 0.71 7.12 42.81 0.30 1.01 16 24 C -0.21 -4.58 11.15 22.62 0.25 -4.33 16 25 C -0.04 -0.73 12.27 67.11 0.82 0.10 16 26 O 0.12 3.44 11.17 71.43 0.80 4.24 16 27 N -0.31 -12.05 8.71 -49.49 -0.43 -12.48 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 2.41 8.03 -2.38 -0.02 2.39 16 32 H 0.08 2.73 7.86 -2.39 -0.02 2.71 16 33 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 34 H 0.02 1.12 7.19 -2.39 -0.02 1.11 16 35 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 36 H 0.24 14.57 8.31 -92.70 -0.77 13.80 16 37 H 0.41 18.44 7.13 -92.71 -0.66 17.78 16 38 H 0.32 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.21 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.28 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -85.46 347.07 3.34 -82.12 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.43 Total: 18.64 kcal Atomic # 6 Polarization: 28.61 SS G_CDS: 7.78 Total: 36.39 kcal Atomic # 7 Polarization: -148.70 SS G_CDS: -7.59 Total: -156.29 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: 0.70 Total: -28.67 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -85.46 3.34 -82.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498426848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.244 kcal (2) G-P(sol) polarization free energy of solvation -85.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds