Wall clock time and date at job start Tue Mar 31 2020 13:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38340 * 120.01170 * 359.72565 * 3 2 1 5 5 C 1.39326 * 119.88157 * 179.75110 * 4 3 2 6 6 C 1.48427 * 120.04880 * 180.27129 * 5 4 3 7 7 N 1.34063 * 126.67490 * 359.94144 * 6 5 4 8 8 N 1.28983 * 107.26673 * 179.83081 * 7 6 5 9 9 N 1.28730 * 108.95010 * 0.43491 * 8 7 6 10 10 H 0.97006 * 125.34106 * 179.74035 * 9 8 7 11 11 N 1.28875 * 109.32044 * 359.72374 * 9 8 7 12 12 C 1.39327 * 119.90791 * 0.52280 * 5 4 3 13 13 C 1.38007 * 120.03390 * 359.75200 * 12 5 4 14 14 C 1.38663 * 120.11617 * 359.97438 * 13 12 5 15 15 O 1.35958 * 119.96115 * 180.02562 * 14 13 12 16 16 C 1.42907 * 116.99451 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.46923 * 180.02562 * 16 15 14 18 18 O 1.42894 * 109.47462 * 64.99189 * 17 16 15 19 19 C 1.42901 * 114.00221 * 180.02562 * 18 17 16 20 20 C 1.50691 * 109.47348 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99965 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00069 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00317 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00170 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47017 * 59.99751 * 24 22 20 26 26 H 1.48500 * 109.47104 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46973 * 300.00100 * 24 22 20 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 31 31 H 1.08000 * 120.06550 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.98503 * 179.77238 * 12 5 4 33 33 H 1.07991 * 119.94776 * 179.97438 * 13 12 5 34 34 H 1.09002 * 109.46744 * 299.99217 * 16 15 14 35 35 H 1.08998 * 109.47324 * 59.99835 * 16 15 14 36 36 H 1.08999 * 109.47271 * 185.00229 * 17 16 15 37 37 H 1.09006 * 109.46501 * 304.99504 * 17 16 15 38 38 H 1.09006 * 109.46559 * 300.00405 * 19 18 17 39 39 H 1.08997 * 109.47241 * 59.99738 * 19 18 17 40 40 H 0.96994 * 120.00652 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3721 -0.0057 5 6 1.9288 3.6120 -0.0005 6 6 1.1243 4.8594 -0.0005 7 7 -0.2133 4.9495 -0.0063 8 7 -0.5124 6.2042 -0.0004 9 7 0.5749 6.8932 -0.0005 10 1 0.6254 7.8620 -0.0002 11 7 1.5861 6.0942 -0.0005 12 6 3.3204 3.6795 -0.0005 13 6 4.0682 2.5196 -0.0005 14 6 3.4371 1.2849 0.0000 15 8 4.1768 0.1442 0.0005 16 6 5.5982 0.2928 -0.0001 17 6 6.2554 -1.0888 -0.0001 18 8 5.9452 -1.7640 -1.2207 19 6 6.5136 -3.0711 -1.3226 20 6 6.1247 -3.6865 -2.6421 21 1 5.5051 -3.1347 -3.3335 22 6 6.5591 -4.9543 -2.9661 23 7 7.3131 -5.6264 -2.1239 24 14 6.0765 -5.7174 -4.6015 25 1 6.5821 -4.8703 -5.7114 26 1 6.6672 -7.0758 -4.7074 27 1 4.5969 -5.8126 -4.6858 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 0.2148 2.3171 -0.0098 32 1 3.8142 4.6400 -0.0001 33 1 5.1467 2.5735 -0.0009 34 1 5.9057 0.8410 -0.8907 35 1 5.9064 0.8422 0.8894 36 1 7.3360 -0.9772 0.0891 37 1 5.8795 -1.6699 0.8421 38 1 7.5996 -3.0009 -1.2608 39 1 6.1428 -3.6931 -0.5079 40 1 7.6190 -6.5182 -2.3520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591501879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:45 Heat of formation + Delta-G solvation = 32.052828 kcal Electronic energy + Delta-G solvation = -25472.449012 eV Core-core repulsion = 21484.808380 eV Total energy + Delta-G solvation = -3987.640633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.72033 -40.61247 -38.56888 -37.33532 -36.44525 -34.58570 -33.51823 -32.72837 -30.72286 -30.56412 -29.19380 -27.36447 -26.87858 -24.99238 -24.40928 -23.23626 -22.27777 -21.76274 -21.27405 -19.53463 -18.60422 -17.46239 -17.41421 -16.60387 -16.30951 -16.24949 -15.65541 -15.49640 -15.07875 -14.78385 -14.53426 -14.28714 -14.23099 -14.07442 -13.33073 -12.92514 -12.89024 -12.77433 -12.31041 -11.97460 -11.85366 -11.65838 -11.55516 -11.45683 -11.38658 -11.18047 -11.10853 -10.79980 -10.77501 -10.60220 -10.40698 -10.01750 -9.10013 -8.87646 -8.82908 -8.16782 -7.82418 -6.08082 -4.09370 0.51508 0.93496 1.18068 1.94365 2.14980 3.20166 3.24167 3.35352 3.37460 3.41986 3.44918 3.59495 3.93702 4.35672 4.64377 4.77228 4.82041 4.85896 5.00642 5.12332 5.15906 5.16956 5.21550 5.28352 5.29784 5.40489 5.49798 5.51466 5.83468 5.86414 5.91790 6.02307 6.10821 6.13465 6.20196 6.42523 7.08022 7.10215 7.44224 7.58196 7.82218 7.86398 8.16856 8.57320 9.03132 9.55067 11.03452 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.002292 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.456116 B =12214.872268 C =12719.722541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.296 6.296 3 C 0.096 3.904 4 C -0.131 4.131 5 C -0.035 4.035 6 C 0.233 3.767 7 N -0.272 5.272 8 N -0.051 5.051 9 N -0.230 5.230 10 H 0.475 0.525 11 N -0.298 5.298 12 C -0.069 4.069 13 C -0.185 4.185 14 C 0.139 3.861 15 O -0.282 6.282 16 C 0.061 3.939 17 C 0.063 3.937 18 O -0.389 6.389 19 C 0.195 3.805 20 C -0.513 4.513 21 H 0.066 0.934 22 C 0.056 3.944 23 N -0.900 5.900 24 Si 0.909 3.091 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.005 0.995 39 H 0.007 0.993 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 24.538 7.925 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.050 3.950 4 C -0.152 4.152 5 C -0.039 4.039 6 C -0.046 4.046 7 N -0.146 5.146 8 N -0.047 5.047 9 N -0.076 5.076 10 H 0.329 0.671 11 N -0.149 5.149 12 C -0.090 4.090 13 C -0.204 4.204 14 C 0.091 3.909 15 O -0.194 6.194 16 C -0.014 4.014 17 C -0.015 4.015 18 O -0.309 6.309 19 C 0.121 3.879 20 C -0.552 4.552 21 H 0.084 0.916 22 C -0.145 4.145 23 N -0.539 5.539 24 Si 0.736 3.264 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.200 1.200 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.171 24.366 7.792 28.329 hybrid contribution 0.362 0.145 -0.581 0.699 sum -11.809 24.511 7.212 28.147 Atomic orbital electron populations 1.23120 0.78493 1.04292 1.01176 1.86301 1.21005 1.24898 1.88690 1.18060 0.89158 0.85273 1.02461 1.20956 1.00579 0.89827 1.03870 1.16736 0.91338 0.86676 1.09140 1.23624 0.88671 0.91743 1.00606 1.76081 1.12455 1.07887 1.18142 1.78894 1.12559 0.98466 1.14738 1.47714 1.00973 1.12590 1.46280 0.67122 1.74941 1.16000 1.01362 1.22624 1.20801 0.91567 0.98644 0.97941 1.21022 1.00864 0.90467 1.08011 1.18598 0.88629 0.86719 0.96960 1.86374 1.19038 1.27075 1.86867 1.23061 0.77955 0.98990 1.01392 1.22266 0.97199 0.91348 0.90673 1.87929 1.75619 1.32588 1.34723 1.20221 0.92598 0.77575 0.97524 1.21013 1.32035 1.00093 1.02025 0.91555 1.24947 0.95080 0.96651 0.97853 1.69948 1.35344 1.12596 1.35993 0.86386 0.78943 0.77978 0.83115 1.20039 1.21185 1.19956 0.87939 0.92573 0.92705 0.83597 0.84646 0.83819 0.91038 0.91084 0.92104 0.93190 0.97682 0.97504 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.46 10.27 -34.37 -0.35 -4.81 16 3 C 0.10 1.37 6.69 -39.17 -0.26 1.11 16 4 C -0.13 -1.57 8.69 -39.14 -0.34 -1.91 16 5 C -0.04 -0.40 5.88 -104.89 -0.62 -1.02 16 6 C 0.23 2.60 7.93 -156.29 -1.24 1.36 16 7 N -0.27 -3.14 12.23 32.15 0.39 -2.75 16 8 N -0.05 -0.48 13.47 60.35 0.81 0.33 16 9 N -0.23 -1.53 7.90 60.35 0.48 -1.05 16 10 H 0.47 0.78 8.96 -340.35 -3.05 -2.27 16 11 N -0.30 -2.77 12.08 32.17 0.39 -2.38 16 12 C -0.07 -0.73 9.69 -39.26 -0.38 -1.11 16 13 C -0.18 -2.12 9.02 -39.51 -0.36 -2.48 16 14 C 0.14 2.04 6.70 -39.05 -0.26 1.77 16 15 O -0.28 -4.88 9.88 -40.69 -0.40 -5.28 16 16 C 0.06 0.89 5.12 37.16 0.19 1.08 16 17 C 0.06 1.14 6.32 37.16 0.23 1.38 16 18 O -0.39 -9.57 10.29 -40.09 -0.41 -9.98 16 19 C 0.19 5.41 5.69 36.00 0.20 5.62 16 20 C -0.51 -15.39 9.43 -34.44 -0.32 -15.72 16 21 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 24 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 30 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 31 H 0.15 1.54 6.11 -52.49 -0.32 1.22 16 32 H 0.14 1.17 7.87 -52.49 -0.41 0.75 16 33 H 0.14 1.33 6.28 -52.49 -0.33 1.00 16 34 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 35 H 0.07 0.76 7.66 -51.93 -0.40 0.36 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -36.54 353.39 -7.68 -44.22 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -7.36 Total: -7.24 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -2.26 Total: -7.15 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 2.81 Total: -32.22 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.17 Total: -20.07 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.54 -7.68 -44.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591501879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.269 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds