Wall clock time and date at job start Tue Mar 31 2020 13:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35694 * 117.00308 * 2 1 4 4 C 1.39257 * 119.39150 * 179.97438 * 3 2 1 5 5 C 1.36958 * 119.65402 * 179.97438 * 4 3 2 6 6 C 1.39966 * 118.35457 * 0.25477 * 5 4 3 7 7 N 1.35744 * 133.78570 * 179.74764 * 6 5 4 8 8 C 1.30069 * 109.49833 * 180.02562 * 7 6 5 9 9 C 1.50700 * 124.97866 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47038 * 274.96816 * 9 8 7 11 11 C 1.36945 * 119.99541 * 90.00357 * 10 9 8 12 12 H 1.07991 * 119.99564 * 217.73087 * 11 10 9 13 13 C 1.38815 * 119.99866 * 37.73699 * 11 10 9 14 14 N 1.31620 * 120.00033 * 21.09939 * 13 11 10 15 15 Si 1.86798 * 119.99600 * 201.10165 * 13 11 10 16 16 H 1.48504 * 109.47298 * 89.99803 * 15 13 11 17 17 H 1.48501 * 109.46950 * 209.99414 * 15 13 11 18 18 H 1.48492 * 109.47313 * 329.99867 * 15 13 11 19 19 C 1.46499 * 120.00472 * 270.00185 * 10 9 8 20 20 C 1.52999 * 109.47067 * 95.35576 * 19 10 9 21 21 C 1.50697 * 109.46936 * 179.97438 * 20 19 10 22 22 O 1.20822 * 120.00245 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99932 * 179.97438 * 21 20 19 24 24 N 1.36215 * 110.03855 * 359.44445 * 8 7 6 25 25 H 0.97007 * 126.27835 * 179.97438 * 24 8 7 26 26 C 1.37770 * 107.44069 * 0.64637 * 24 8 7 27 27 N 1.32075 * 119.38804 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46955 * 59.99661 * 1 2 3 29 29 H 1.09000 * 109.47639 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47000 * 300.00472 * 1 2 3 31 31 H 1.08003 * 120.17198 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.82144 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47170 * 34.97774 * 9 8 7 34 34 H 1.09008 * 109.46569 * 154.97287 * 9 8 7 35 35 H 0.97003 * 119.99396 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47138 * 215.36183 * 19 10 9 37 37 H 1.09004 * 109.47094 * 335.35400 * 19 10 9 38 38 H 1.09001 * 109.46897 * 300.00250 * 20 19 10 39 39 H 1.09003 * 109.46827 * 60.00180 * 20 19 10 40 40 H 0.96698 * 117.00554 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4365 1.2670 0.0005 5 6 4.0639 2.4844 0.0000 6 6 3.2735 3.6396 0.0044 7 7 3.5519 4.9682 0.0096 8 6 2.4410 5.6445 0.0126 9 6 2.3451 7.1485 0.0181 10 7 2.4342 7.6385 1.3958 11 6 3.6550 7.9430 1.9365 12 1 3.8585 7.7157 2.9724 13 6 4.6306 8.5441 1.1531 14 7 4.2896 9.1917 0.0591 15 14 6.4275 8.4337 1.6514 16 1 7.0366 7.2236 1.0431 17 1 7.1480 9.6424 1.1767 18 1 6.5266 8.3474 3.1305 19 6 1.2175 7.8027 2.1951 20 6 0.9958 6.5528 3.0491 21 6 -0.2554 6.7220 3.8718 22 8 -0.9036 7.7378 3.7837 23 8 -0.6504 5.7437 4.7016 24 7 1.3768 4.7943 -0.0028 25 1 0.4403 5.0469 -0.0037 26 6 1.8747 3.5097 -0.0013 27 7 1.3140 2.3090 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0177 0.3568 0.0014 32 1 5.1418 2.5514 0.0008 33 1 3.1620 7.5667 -0.5700 34 1 1.3924 7.4534 -0.4151 35 1 4.9715 9.6113 -0.4885 36 1 1.3237 8.6721 2.8439 37 1 0.3641 7.9461 1.5324 38 1 0.8897 5.6835 2.4001 39 1 1.8493 6.4095 3.7118 40 1 -1.4595 5.8978 5.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599636861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:08 Heat of formation + Delta-G solvation = -20.677401 kcal Electronic energy + Delta-G solvation = -27009.688369 eV Core-core repulsion = 23019.761182 eV Total energy + Delta-G solvation = -3989.927187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89198 -40.00864 -39.51849 -36.93784 -36.18400 -35.65539 -33.28629 -32.23984 -30.95286 -30.61293 -29.09904 -27.57759 -25.87855 -24.95669 -22.99998 -22.50235 -21.73354 -20.51366 -20.08127 -18.51256 -17.92506 -17.82670 -17.01313 -16.66359 -16.24322 -16.06304 -15.77311 -15.25144 -14.91549 -14.78417 -14.06677 -13.84232 -13.69154 -13.56793 -13.18282 -12.94424 -12.79410 -12.59255 -12.32680 -11.91424 -11.63086 -11.40671 -11.31370 -10.92668 -10.82200 -10.77079 -10.68734 -10.55679 -10.42789 -10.31842 -10.19993 -10.02794 -8.94129 -8.65325 -8.62840 -7.64749 -6.94634 -6.00863 -3.58950 1.15972 1.53481 2.42253 2.78232 3.20712 3.25887 3.35087 3.38925 3.44325 3.48194 4.09000 4.41056 4.48631 4.74236 5.07422 5.14185 5.22631 5.25377 5.26964 5.29303 5.40089 5.46078 5.50524 5.57239 5.70785 5.88632 6.01124 6.06112 6.11602 6.36081 6.40795 6.43633 6.60973 6.69390 6.79344 7.19611 7.28613 7.57525 7.68793 8.03686 8.07411 8.26586 8.47281 8.91026 9.55410 10.06071 11.03690 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.005102 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.880356 B = 5486.248515 C = 7599.873542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.337 3.663 4 C -0.195 4.195 5 C 0.004 3.996 6 C -0.018 4.018 7 N -0.466 5.466 8 C 0.302 3.698 9 C 0.206 3.794 10 N -0.560 5.560 11 C -0.272 4.272 12 H 0.064 0.936 13 C 0.032 3.968 14 N -0.881 5.881 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.278 1.278 19 C 0.157 3.843 20 C -0.136 4.136 21 C 0.480 3.520 22 O -0.519 6.519 23 O -0.524 6.524 24 N -0.593 5.593 25 H 0.418 0.582 26 C 0.262 3.738 27 N -0.543 5.543 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.055 0.945 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 -12.870 0.528 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.149 3.851 4 C -0.218 4.218 5 C -0.022 4.022 6 C -0.139 4.139 7 N -0.185 5.185 8 C 0.032 3.968 9 C 0.076 3.924 10 N -0.278 5.278 11 C -0.400 4.400 12 H 0.082 0.918 13 C -0.170 4.170 14 N -0.522 5.522 15 Si 0.733 3.267 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.203 1.203 19 C 0.030 3.970 20 C -0.176 4.176 21 C 0.323 3.677 22 O -0.407 6.407 23 O -0.335 6.335 24 N -0.208 5.208 25 H 0.257 0.743 26 C 0.025 3.975 27 N -0.273 5.273 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.121 -12.449 0.146 14.343 hybrid contribution -0.419 -0.354 0.686 0.879 sum -7.540 -12.803 0.833 14.882 Atomic orbital electron populations 1.22773 0.77787 1.02456 1.02336 1.86242 1.22508 1.24336 1.88415 1.19255 0.88777 0.83280 0.93825 1.20445 0.91512 0.98969 1.10867 1.20261 1.00203 0.88472 0.93280 1.19834 0.91545 0.93679 1.08829 1.70646 1.26255 1.00285 1.21343 1.26422 0.79669 0.97069 0.93613 1.20027 1.03584 0.78891 0.89892 1.43733 1.02578 1.71198 1.10259 1.18923 0.89181 1.35074 0.96857 0.91822 1.25124 0.99431 0.94908 0.97540 1.69911 1.33089 1.32609 1.16587 0.86290 0.84572 0.77426 0.78421 1.20457 1.21738 1.20286 1.20794 0.89419 0.93009 0.93822 1.22333 0.91982 1.04571 0.98759 1.24027 0.86673 0.79913 0.77131 1.90687 1.55691 1.29511 1.64855 1.84628 1.46793 1.47598 1.54529 1.43280 1.10712 1.03249 1.63588 0.74317 1.18410 0.91268 0.85223 1.02579 1.65716 1.41098 0.96442 1.24031 0.92567 0.88947 0.92521 0.83818 0.83668 0.84664 0.92679 0.92971 0.91411 0.93196 0.89449 0.87782 0.74099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.37 101.05 1.05 1.48 16 2 O -0.31 -4.07 10.47 -18.78 -0.20 -4.27 16 3 C 0.34 5.09 7.49 -17.07 -0.13 4.96 16 4 C -0.19 -2.69 9.96 -39.67 -0.40 -3.08 16 5 C 0.00 0.07 10.16 -39.40 -0.40 -0.33 16 6 C -0.02 -0.34 7.24 -84.64 -0.61 -0.95 16 7 N -0.47 -9.99 11.28 -8.16 -0.09 -10.09 16 8 C 0.30 5.90 7.46 -154.69 -1.15 4.74 16 9 C 0.21 4.25 5.95 -5.20 -0.03 4.22 16 10 N -0.56 -12.31 2.42 -174.61 -0.42 -12.74 16 11 C -0.27 -6.79 9.45 -15.05 -0.14 -6.93 16 12 H 0.06 1.62 7.91 -52.49 -0.42 1.20 16 13 C 0.03 0.82 4.96 -17.43 -0.09 0.74 16 14 N -0.88 -23.28 11.46 55.49 0.64 -22.64 16 15 Si 0.90 20.95 29.60 -169.99 -5.03 15.92 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.16 2.98 5.01 -4.04 -0.02 2.96 16 20 C -0.14 -2.27 6.11 -27.88 -0.17 -2.44 16 21 C 0.48 7.46 8.33 36.00 0.30 7.76 16 22 O -0.52 -9.25 16.74 -18.75 -0.31 -9.56 16 23 O -0.52 -6.66 13.42 -39.25 -0.53 -7.18 16 24 N -0.59 -9.89 5.63 -9.47 -0.05 -9.94 16 25 H 0.42 5.77 8.96 -40.82 -0.37 5.40 16 26 C 0.26 4.66 8.45 -155.60 -1.32 3.35 16 27 N -0.54 -8.96 9.22 -12.35 -0.11 -9.08 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.10 -51.92 -0.42 0.18 16 31 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 33 H 0.14 3.25 5.52 -51.93 -0.29 2.97 16 34 H 0.05 0.99 7.86 -51.92 -0.41 0.58 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 37 H 0.05 0.89 7.79 -51.93 -0.40 0.48 16 38 H 0.09 1.45 7.33 -51.93 -0.38 1.07 16 39 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.40 3.18 9.10 45.56 0.41 3.59 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -31.24 351.94 -7.85 -39.09 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.93 Total: 8.73 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: -3.11 Total: 16.46 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.05 Total: -64.48 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.04 Total: -21.02 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.24 -7.85 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599636861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.409 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds