Wall clock time and date at job start Tue Mar 31 2020 13:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35694 * 117.00308 * 2 1 4 4 C 1.39257 * 119.39150 * 179.97438 * 3 2 1 5 5 C 1.36958 * 119.65402 * 179.97438 * 4 3 2 6 6 C 1.39966 * 118.35457 * 0.25477 * 5 4 3 7 7 N 1.35744 * 133.78570 * 179.74764 * 6 5 4 8 8 C 1.30069 * 109.49833 * 180.02562 * 7 6 5 9 9 C 1.50700 * 124.97866 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47038 * 274.96816 * 9 8 7 11 11 C 1.36945 * 119.99541 * 90.00357 * 10 9 8 12 12 H 1.07991 * 119.99564 * 217.73087 * 11 10 9 13 13 C 1.38815 * 119.99866 * 37.73699 * 11 10 9 14 14 N 1.31620 * 120.00033 * 21.09939 * 13 11 10 15 15 Si 1.86798 * 119.99600 * 201.10165 * 13 11 10 16 16 H 1.48504 * 109.47298 * 89.99803 * 15 13 11 17 17 H 1.48501 * 109.46950 * 209.99414 * 15 13 11 18 18 H 1.48492 * 109.47313 * 329.99867 * 15 13 11 19 19 C 1.46499 * 120.00472 * 270.00185 * 10 9 8 20 20 C 1.52999 * 109.47067 * 95.35576 * 19 10 9 21 21 C 1.50697 * 109.46936 * 179.97438 * 20 19 10 22 22 O 1.20822 * 120.00245 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99932 * 179.97438 * 21 20 19 24 24 N 1.36215 * 110.03855 * 359.44445 * 8 7 6 25 25 H 0.97007 * 126.27835 * 179.97438 * 24 8 7 26 26 C 1.37770 * 107.44069 * 0.64637 * 24 8 7 27 27 N 1.32075 * 119.38804 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46955 * 59.99661 * 1 2 3 29 29 H 1.09000 * 109.47639 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47000 * 300.00472 * 1 2 3 31 31 H 1.08003 * 120.17198 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.82144 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47170 * 34.97774 * 9 8 7 34 34 H 1.09008 * 109.46569 * 154.97287 * 9 8 7 35 35 H 0.97003 * 119.99396 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47138 * 215.36183 * 19 10 9 37 37 H 1.09004 * 109.47094 * 335.35400 * 19 10 9 38 38 H 1.09001 * 109.46897 * 300.00250 * 20 19 10 39 39 H 1.09003 * 109.46827 * 60.00180 * 20 19 10 40 40 H 0.96698 * 117.00554 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4365 1.2670 0.0005 5 6 4.0639 2.4844 0.0000 6 6 3.2735 3.6396 0.0044 7 7 3.5519 4.9682 0.0096 8 6 2.4410 5.6445 0.0126 9 6 2.3451 7.1485 0.0181 10 7 2.4342 7.6385 1.3958 11 6 3.6550 7.9430 1.9365 12 1 3.8585 7.7157 2.9724 13 6 4.6306 8.5441 1.1531 14 7 4.2896 9.1917 0.0591 15 14 6.4275 8.4337 1.6514 16 1 7.0366 7.2236 1.0431 17 1 7.1480 9.6424 1.1767 18 1 6.5266 8.3474 3.1305 19 6 1.2175 7.8027 2.1951 20 6 0.9958 6.5528 3.0491 21 6 -0.2554 6.7220 3.8718 22 8 -0.9036 7.7378 3.7837 23 8 -0.6504 5.7437 4.7016 24 7 1.3768 4.7943 -0.0028 25 1 0.4403 5.0469 -0.0037 26 6 1.8747 3.5097 -0.0013 27 7 1.3140 2.3090 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0177 0.3568 0.0014 32 1 5.1418 2.5514 0.0008 33 1 3.1620 7.5667 -0.5700 34 1 1.3924 7.4534 -0.4151 35 1 4.9715 9.6113 -0.4885 36 1 1.3237 8.6721 2.8439 37 1 0.3641 7.9461 1.5324 38 1 0.8897 5.6835 2.4001 39 1 1.8493 6.4095 3.7118 40 1 -1.4595 5.8978 5.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599636861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:07 Heat of formation + Delta-G solvation = -42.650338 kcal Electronic energy + Delta-G solvation = -27010.641187 eV Core-core repulsion = 23019.761182 eV Total energy + Delta-G solvation = -3990.880005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.23114 -41.25282 -40.67040 -38.26106 -37.48654 -37.01786 -34.60093 -33.97425 -32.24830 -32.16715 -30.45301 -28.80171 -27.24509 -26.52817 -24.26990 -23.84442 -23.13591 -21.88360 -21.58879 -19.73642 -19.22674 -19.11167 -18.49274 -18.05643 -17.56766 -17.19771 -17.08020 -16.60787 -16.36468 -16.20226 -15.49035 -15.28311 -15.16275 -14.94110 -14.37082 -14.25123 -14.15267 -13.97274 -13.53121 -13.14262 -13.09152 -12.75207 -12.73392 -12.56845 -12.53342 -12.26935 -12.11107 -12.03089 -11.86999 -11.80049 -11.64862 -11.58013 -10.55288 -10.27969 -9.90448 -8.97480 -8.74799 -7.91772 -5.51580 -0.10279 0.31010 1.17252 1.46424 1.52831 1.57700 1.59251 1.84548 2.13134 2.20711 2.55761 2.81057 3.17359 3.31725 3.50795 3.68666 3.80940 4.01165 4.07961 4.10439 4.22202 4.44418 4.48432 4.49226 4.52164 4.62916 4.68036 4.74574 4.86160 4.92839 5.09005 5.18596 5.22209 5.45170 5.49176 5.57679 5.70950 6.08914 6.30780 6.44075 6.79479 6.98500 7.03625 7.08463 7.71572 8.21323 9.09813 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.005102 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.880356 B = 5486.248515 C = 7599.873542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.307 6.307 3 C 0.337 3.663 4 C -0.180 4.180 5 C 0.001 3.999 6 C -0.053 4.053 7 N -0.503 5.503 8 C 0.296 3.704 9 C 0.213 3.787 10 N -0.573 5.573 11 C -0.271 4.271 12 H 0.055 0.945 13 C -0.008 4.008 14 N -0.905 5.905 15 Si 0.949 3.051 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.272 1.272 19 C 0.161 3.839 20 C -0.124 4.124 21 C 0.494 3.506 22 O -0.543 6.543 23 O -0.515 6.515 24 N -0.577 5.577 25 H 0.431 0.569 26 C 0.254 3.746 27 N -0.551 5.551 28 H 0.053 0.947 29 H 0.128 0.872 30 H 0.051 0.949 31 H 0.181 0.819 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 -15.561 1.070 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.213 6.213 3 C 0.149 3.851 4 C -0.203 4.203 5 C -0.025 4.025 6 C -0.174 4.174 7 N -0.224 5.224 8 C 0.026 3.974 9 C 0.083 3.917 10 N -0.291 5.291 11 C -0.401 4.401 12 H 0.072 0.928 13 C -0.207 4.207 14 N -0.547 5.547 15 Si 0.777 3.223 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.197 1.197 19 C 0.034 3.966 20 C -0.164 4.164 21 C 0.337 3.663 22 O -0.434 6.434 23 O -0.329 6.329 24 N -0.193 5.193 25 H 0.272 0.728 26 C 0.019 3.981 27 N -0.282 5.282 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.199 0.801 32 H 0.181 0.819 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -8.190 -15.175 0.719 17.259 hybrid contribution -0.219 0.228 0.541 0.627 sum -8.409 -14.947 1.260 17.196 Atomic orbital electron populations 1.23042 0.76088 1.04739 1.01958 1.86267 1.24157 1.23027 1.87828 1.19680 0.89584 0.83534 0.92340 1.20826 0.91311 0.99617 1.08510 1.20597 1.01130 0.88079 0.92692 1.20245 0.92854 0.93508 1.10786 1.70525 1.27661 1.02014 1.22157 1.25751 0.80262 0.96537 0.94894 1.19726 1.03415 0.79708 0.88806 1.43785 1.02543 1.72013 1.10800 1.19003 0.90473 1.34021 0.96554 0.92762 1.25598 1.01732 0.95405 0.97951 1.69997 1.33371 1.33925 1.17429 0.85587 0.81839 0.76650 0.78195 1.21564 1.21766 1.19733 1.20735 0.88710 0.93414 0.93715 1.21987 0.92600 1.03272 0.98578 1.23517 0.85890 0.79797 0.77083 1.90692 1.56365 1.30536 1.65783 1.84546 1.48212 1.46153 1.53999 1.42980 1.10784 1.02736 1.62826 0.72843 1.18463 0.91020 0.85711 1.02942 1.65764 1.41346 0.96236 1.24887 0.92843 0.85410 0.92973 0.80138 0.81944 0.87965 0.90387 0.93438 0.93304 0.91881 0.89047 0.88740 0.71257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.37 113.37 1.18 1.81 16 2 O -0.31 -7.09 10.47 -90.13 -0.94 -8.03 16 3 C 0.34 9.29 7.49 84.90 0.64 9.92 16 4 C -0.18 -4.43 9.96 22.21 0.22 -4.20 16 5 C 0.00 0.04 10.16 22.39 0.23 0.27 16 6 C -0.05 -1.99 7.24 39.51 0.29 -1.71 16 7 N -0.50 -21.87 11.28 -179.72 -2.03 -23.90 16 8 C 0.30 11.66 7.46 137.88 1.03 12.69 16 9 C 0.21 8.95 5.95 85.63 0.51 9.46 16 10 N -0.57 -25.60 2.42 -706.34 -1.71 -27.31 16 11 C -0.27 -13.84 9.45 84.03 0.79 -13.05 16 12 H 0.05 2.82 7.91 -2.92 -0.02 2.80 16 13 C -0.01 -0.40 4.96 84.86 0.42 0.03 16 14 N -0.91 -49.21 11.46 21.65 0.25 -48.96 16 15 Si 0.95 43.94 29.60 68.60 2.03 45.97 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 C 0.16 6.12 5.01 86.38 0.43 6.55 16 20 C -0.12 -4.07 6.11 29.85 0.18 -3.88 16 21 C 0.49 14.57 8.33 71.23 0.59 15.17 16 22 O -0.54 -18.67 16.74 21.98 0.37 -18.30 16 23 O -0.52 -11.75 13.42 -51.40 -0.69 -12.44 16 24 N -0.58 -18.91 5.63 -183.86 -1.04 -19.94 16 25 H 0.43 11.43 8.96 -92.70 -0.83 10.60 16 26 C 0.25 8.82 8.45 133.78 1.13 9.95 16 27 N -0.55 -17.18 9.22 -305.94 -2.82 -20.00 16 28 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 29 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 31 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.10 5.10 5.52 -2.39 -0.01 5.09 16 34 H 0.08 2.81 7.86 -2.38 -0.02 2.80 16 35 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 37 H 0.06 2.21 7.79 -2.39 -0.02 2.20 16 38 H 0.09 2.94 7.33 -2.39 -0.02 2.93 16 39 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.43 5.43 9.10 -74.06 -0.67 4.75 16 Total: -1.00 -68.23 351.94 0.67 -67.56 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.39 Total: 22.35 kcal Atomic # 6 Polarization: 35.37 SS G_CDS: 7.64 Total: 43.01 kcal Atomic # 7 Polarization: -132.77 SS G_CDS: -7.34 Total: -140.11 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.27 Total: -38.77 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.23 0.67 -67.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599636861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.907 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds