Wall clock time and date at job start Tue Mar 31 2020 13:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36758 * 125.07733 * 2 1 4 4 C 1.34264 * 109.90530 * 179.97438 * 3 2 1 5 5 C 1.46484 * 107.00082 * 0.02562 * 4 3 2 6 6 C 1.39793 * 133.97712 * 179.97438 * 5 4 3 7 7 C 1.36628 * 119.90705 * 179.97438 * 6 5 4 8 8 C 1.38749 * 120.59422 * 0.02925 * 7 6 5 9 9 C 1.38412 * 120.57823 * 359.96929 * 8 7 6 10 10 N 1.39876 * 120.17573 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99710 * 34.40682 * 10 9 8 12 12 O 1.21636 * 120.00389 * 5.60227 * 11 10 9 13 13 C 1.47375 * 119.99731 * 185.59559 * 11 10 9 14 14 C 1.39256 * 120.28826 * 355.07055 * 13 11 10 15 15 C 1.38200 * 120.09402 * 180.29817 * 14 13 11 16 16 C 1.38847 * 120.67792 * 359.43416 * 15 14 13 17 17 C 1.37583 * 120.57605 * 0.56418 * 16 15 14 18 18 C 1.40720 * 119.88224 * 359.72158 * 17 16 15 19 19 C 1.40870 * 120.32874 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99616 * 215.21169 * 19 18 17 21 21 C 1.40271 * 119.99783 * 35.21086 * 19 18 17 22 22 N 1.30625 * 120.00219 * 5.45727 * 21 19 18 23 23 Si 1.86807 * 119.99507 * 185.45596 * 21 19 18 24 24 H 1.48504 * 109.46999 * 60.00207 * 23 21 19 25 25 H 1.48497 * 109.47013 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47203 * 299.99972 * 23 21 19 27 27 C 1.37773 * 125.07159 * 180.29664 * 2 1 3 28 28 H 1.09005 * 109.47347 * 85.34678 * 1 2 3 29 29 H 1.09002 * 109.47473 * 205.34106 * 1 2 3 30 30 H 1.08999 * 109.47136 * 325.33978 * 1 2 3 31 31 H 1.08007 * 125.04633 * 359.96953 * 3 2 1 32 32 H 1.07999 * 126.49765 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.04630 * 0.02736 * 6 5 4 34 34 H 1.07991 * 119.70101 * 180.02562 * 7 6 5 35 35 H 1.07999 * 119.71086 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00084 * 214.40056 * 10 9 8 37 37 H 1.08005 * 119.95365 * 0.02562 * 14 13 11 38 38 H 1.07994 * 119.65875 * 179.72561 * 15 14 13 39 39 H 1.07992 * 119.71194 * 180.28584 * 16 15 14 40 40 H 1.07993 * 120.06013 * 179.74832 * 17 16 15 41 41 H 0.97009 * 119.99710 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2509 1.1192 0.0000 4 6 3.5467 0.7678 0.0006 5 6 3.5935 -0.6963 0.0003 6 6 4.6299 -1.6344 0.0002 7 6 4.3402 -2.9696 0.0005 8 6 3.0233 -3.4065 0.0003 9 6 1.9798 -2.4971 0.0005 10 7 0.6553 -2.9469 0.0008 11 6 0.3270 -4.0754 0.6606 12 8 1.1590 -4.6471 1.3391 13 6 -1.0401 -4.6165 0.5600 14 6 -2.0245 -3.9140 -0.1303 15 6 -3.3068 -4.4222 -0.2169 16 6 -3.6276 -5.6391 0.3696 17 6 -2.6767 -6.3564 1.0582 18 6 -1.3649 -5.8585 1.1663 19 6 -0.3838 -6.5854 1.8686 20 1 0.3712 -6.0631 2.4375 21 6 -0.3874 -7.9876 1.8292 22 7 -1.2328 -8.6171 1.0575 23 14 0.8167 -8.9546 2.8802 24 1 0.5906 -8.6354 4.3127 25 1 0.6102 -10.4084 2.6589 26 1 2.2061 -8.5887 2.5048 27 6 2.2566 -1.1276 -0.0058 28 1 -0.3634 0.0834 -1.0243 29 1 -0.3634 -0.9288 0.4398 30 1 -0.3633 0.8453 0.5844 31 1 1.8837 2.1349 -0.0005 32 1 4.3939 1.4376 0.0003 33 1 5.6582 -1.3041 0.0008 34 1 5.1435 -3.6914 0.0009 35 1 2.8106 -4.4653 0.0010 36 1 -0.0270 -2.4466 -0.4737 37 1 -1.7867 -2.9684 -0.5950 38 1 -4.0658 -3.8693 -0.7502 39 1 -4.6334 -6.0238 0.2884 40 1 -2.9363 -7.3001 1.5146 41 1 -1.2350 -9.5868 1.0300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638661397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:23 Heat of formation + Delta-G solvation = 58.650314 kcal Electronic energy + Delta-G solvation = -26038.666695 eV Core-core repulsion = 22463.028679 eV Total energy + Delta-G solvation = -3575.638016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28158 -39.25199 -37.30064 -36.34428 -34.54432 -33.69465 -31.95616 -30.35076 -29.82970 -28.92608 -28.46598 -26.06299 -25.43762 -23.12496 -22.02540 -21.64143 -20.99732 -19.99382 -19.29260 -17.83799 -17.10149 -16.51999 -16.23992 -15.44882 -15.33761 -15.27671 -14.61298 -14.36019 -14.23292 -13.97648 -13.48222 -13.28455 -12.91209 -12.79154 -12.75236 -12.66248 -12.40969 -12.19951 -11.72214 -11.45064 -11.19668 -11.17395 -11.10304 -11.05841 -10.75428 -10.57303 -10.16712 -9.99571 -9.78900 -9.34563 -8.72266 -8.45867 -7.96672 -7.72208 -7.44752 -7.02564 -6.86793 -4.50144 1.37678 1.88768 2.23732 2.74200 2.83084 2.87797 3.06415 3.12202 3.20809 3.72349 3.92605 3.96474 4.27945 4.61599 4.71045 4.82290 4.92320 5.09022 5.26850 5.41803 5.47635 5.51619 5.68323 5.75997 5.82112 5.85986 6.00350 6.11557 6.18568 6.32236 6.44921 6.69868 6.74957 6.85950 6.97186 6.99772 7.01191 7.08949 7.16197 7.35343 7.36236 7.50070 7.55141 7.78468 7.87932 8.07168 8.16228 8.57877 8.73030 8.79897 9.21334 10.07037 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.004321 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.002576 B = 6478.054620 C = 8156.657345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.485 5.485 3 C 0.046 3.954 4 C -0.209 4.209 5 C -0.093 4.093 6 C -0.105 4.105 7 C -0.119 4.119 8 C -0.112 4.112 9 C 0.163 3.837 10 N -0.693 5.693 11 C 0.561 3.439 12 O -0.516 6.516 13 C -0.264 4.264 14 C -0.060 4.060 15 C -0.241 4.241 16 C -0.097 4.097 17 C -0.142 4.142 18 C 0.146 3.854 19 C -0.418 4.418 20 H 0.111 0.889 21 C 0.069 3.931 22 N -0.791 5.791 23 Si 0.919 3.081 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.260 1.260 27 C 0.068 3.932 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.396 0.604 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 13.271 -3.074 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.168 5.168 3 C -0.079 4.079 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.125 4.125 7 C -0.138 4.138 8 C -0.135 4.135 9 C 0.065 3.935 10 N -0.340 5.340 11 C 0.357 3.643 12 O -0.392 6.392 13 C -0.269 4.269 14 C -0.078 4.078 15 C -0.260 4.260 16 C -0.116 4.116 17 C -0.161 4.161 18 C 0.142 3.858 19 C -0.446 4.446 20 H 0.129 0.871 21 C -0.150 4.150 22 N -0.416 5.416 23 Si 0.743 3.257 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.039 4.039 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.182 0.818 32 H 0.161 0.839 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.850 12.562 -2.647 13.403 hybrid contribution -0.121 -0.147 -0.032 0.193 sum 3.729 12.415 -2.678 13.237 Atomic orbital electron populations 1.22120 0.77557 1.04768 1.02897 1.43696 1.05581 1.04212 1.63356 1.21704 0.90577 0.90855 1.04797 1.21588 0.95743 0.92802 1.13352 1.19002 0.91401 0.93314 1.06088 1.20129 0.97433 0.91993 1.02932 1.20517 0.95983 0.95251 1.02073 1.20957 0.90883 1.00011 1.01609 1.16816 0.85469 0.87970 1.03206 1.43917 1.07193 1.28273 1.54660 1.18564 0.89063 0.78626 0.78053 1.90680 1.51796 1.57328 1.39439 1.19348 0.91463 1.02893 1.13238 1.20592 0.93618 0.96743 0.96895 1.20284 0.96063 0.99184 1.10477 1.20827 0.97916 0.94848 0.97973 1.21443 0.92357 1.00259 1.02043 1.17470 0.92101 0.88880 0.87349 1.20330 1.10537 0.90462 1.23258 0.87129 1.26177 0.95918 0.98619 0.94309 1.69696 1.31298 1.10687 1.29952 0.86161 0.81342 0.77439 0.80714 1.18684 1.20417 1.18459 1.18116 0.90718 0.86726 1.08343 0.91231 0.89576 0.89882 0.81826 0.83856 0.86476 0.86048 0.84221 0.76652 0.89705 0.88986 0.88924 0.86108 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.35 59.84 0.62 1.33 16 2 N -0.48 -6.47 3.18 -121.67 -0.39 -6.85 16 3 C 0.05 0.52 11.29 -16.76 -0.19 0.33 16 4 C -0.21 -2.60 11.08 -37.66 -0.42 -3.02 16 5 C -0.09 -1.44 6.37 -105.15 -0.67 -2.11 16 6 C -0.11 -1.54 10.05 -39.58 -0.40 -1.94 16 7 C -0.12 -1.87 9.97 -39.97 -0.40 -2.27 16 8 C -0.11 -2.11 8.64 -39.33 -0.34 -2.45 16 9 C 0.16 3.00 6.27 -83.57 -0.52 2.48 16 10 N -0.69 -12.98 4.44 -10.75 -0.05 -13.03 16 11 C 0.56 12.84 7.44 -12.54 -0.09 12.74 16 12 O -0.52 -13.22 11.30 5.25 0.06 -13.16 16 13 C -0.26 -6.27 5.92 -104.37 -0.62 -6.89 16 14 C -0.06 -1.22 9.53 -39.22 -0.37 -1.59 16 15 C -0.24 -4.90 10.03 -39.37 -0.39 -5.29 16 16 C -0.10 -2.10 10.01 -39.60 -0.40 -2.50 16 17 C -0.14 -3.50 8.62 -38.88 -0.34 -3.83 16 18 C 0.15 3.81 5.51 -106.53 -0.59 3.23 16 19 C -0.42 -11.19 7.80 -37.82 -0.30 -11.49 16 20 H 0.11 3.08 5.70 -52.49 -0.30 2.78 16 21 C 0.07 1.72 5.31 -17.30 -0.09 1.63 16 22 N -0.79 -19.96 11.02 55.56 0.61 -19.34 16 23 Si 0.92 19.35 29.57 -169.99 -5.03 14.32 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 27 C 0.07 1.11 6.82 -83.80 -0.57 0.54 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.04 5.83 -51.93 -0.30 0.73 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.14 2.91 6.48 -52.49 -0.34 2.57 16 36 H 0.40 6.35 4.70 -40.82 -0.19 6.16 16 37 H 0.08 1.41 6.41 -52.48 -0.34 1.07 16 38 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.12 3.05 6.54 -52.49 -0.34 2.70 16 41 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -30.36 340.43 -10.06 -40.42 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.33 Total: 13.61 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -6.07 Total: -21.10 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.18 Total: -39.23 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.06 Total: -13.16 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.36 -10.06 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638661397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.075 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds