Wall clock time and date at job start Tue Mar 31 2020 13:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36758 * 125.07733 * 2 1 4 4 C 1.34264 * 109.90530 * 179.97438 * 3 2 1 5 5 C 1.46484 * 107.00082 * 0.02562 * 4 3 2 6 6 C 1.39793 * 133.97712 * 179.97438 * 5 4 3 7 7 C 1.36628 * 119.90705 * 179.97438 * 6 5 4 8 8 C 1.38749 * 120.59422 * 0.02925 * 7 6 5 9 9 C 1.38412 * 120.57823 * 359.96929 * 8 7 6 10 10 N 1.39876 * 120.17573 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99710 * 34.40682 * 10 9 8 12 12 O 1.21636 * 120.00389 * 5.60227 * 11 10 9 13 13 C 1.47375 * 119.99731 * 185.59559 * 11 10 9 14 14 C 1.39256 * 120.28826 * 355.07055 * 13 11 10 15 15 C 1.38200 * 120.09402 * 180.29817 * 14 13 11 16 16 C 1.38847 * 120.67792 * 359.43416 * 15 14 13 17 17 C 1.37583 * 120.57605 * 0.56418 * 16 15 14 18 18 C 1.40720 * 119.88224 * 359.72158 * 17 16 15 19 19 C 1.40870 * 120.32874 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99616 * 215.21169 * 19 18 17 21 21 C 1.40271 * 119.99783 * 35.21086 * 19 18 17 22 22 N 1.30625 * 120.00219 * 5.45727 * 21 19 18 23 23 Si 1.86807 * 119.99507 * 185.45596 * 21 19 18 24 24 H 1.48504 * 109.46999 * 60.00207 * 23 21 19 25 25 H 1.48497 * 109.47013 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47203 * 299.99972 * 23 21 19 27 27 C 1.37773 * 125.07159 * 180.29664 * 2 1 3 28 28 H 1.09005 * 109.47347 * 85.34678 * 1 2 3 29 29 H 1.09002 * 109.47473 * 205.34106 * 1 2 3 30 30 H 1.08999 * 109.47136 * 325.33978 * 1 2 3 31 31 H 1.08007 * 125.04633 * 359.96953 * 3 2 1 32 32 H 1.07999 * 126.49765 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.04630 * 0.02736 * 6 5 4 34 34 H 1.07991 * 119.70101 * 180.02562 * 7 6 5 35 35 H 1.07999 * 119.71086 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00084 * 214.40056 * 10 9 8 37 37 H 1.08005 * 119.95365 * 0.02562 * 14 13 11 38 38 H 1.07994 * 119.65875 * 179.72561 * 15 14 13 39 39 H 1.07992 * 119.71194 * 180.28584 * 16 15 14 40 40 H 1.07993 * 120.06013 * 179.74832 * 17 16 15 41 41 H 0.97009 * 119.99710 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2509 1.1192 0.0000 4 6 3.5467 0.7678 0.0006 5 6 3.5935 -0.6963 0.0003 6 6 4.6299 -1.6344 0.0002 7 6 4.3402 -2.9696 0.0005 8 6 3.0233 -3.4065 0.0003 9 6 1.9798 -2.4971 0.0005 10 7 0.6553 -2.9469 0.0008 11 6 0.3270 -4.0754 0.6606 12 8 1.1590 -4.6471 1.3391 13 6 -1.0401 -4.6165 0.5600 14 6 -2.0245 -3.9140 -0.1303 15 6 -3.3068 -4.4222 -0.2169 16 6 -3.6276 -5.6391 0.3696 17 6 -2.6767 -6.3564 1.0582 18 6 -1.3649 -5.8585 1.1663 19 6 -0.3838 -6.5854 1.8686 20 1 0.3712 -6.0631 2.4375 21 6 -0.3874 -7.9876 1.8292 22 7 -1.2328 -8.6171 1.0575 23 14 0.8167 -8.9546 2.8802 24 1 0.5906 -8.6354 4.3127 25 1 0.6102 -10.4084 2.6589 26 1 2.2061 -8.5887 2.5048 27 6 2.2566 -1.1276 -0.0058 28 1 -0.3634 0.0834 -1.0243 29 1 -0.3634 -0.9288 0.4398 30 1 -0.3633 0.8453 0.5844 31 1 1.8837 2.1349 -0.0005 32 1 4.3939 1.4376 0.0003 33 1 5.6582 -1.3041 0.0008 34 1 5.1435 -3.6914 0.0009 35 1 2.8106 -4.4653 0.0010 36 1 -0.0270 -2.4466 -0.4737 37 1 -1.7867 -2.9684 -0.5950 38 1 -4.0658 -3.8693 -0.7502 39 1 -4.6334 -6.0238 0.2884 40 1 -2.9363 -7.3001 1.5146 41 1 -1.2350 -9.5868 1.0300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638661397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:22 Heat of formation + Delta-G solvation = 43.047510 kcal Electronic energy + Delta-G solvation = -26039.343283 eV Core-core repulsion = 22463.028679 eV Total energy + Delta-G solvation = -3576.314604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.42055 -40.87744 -38.91565 -37.71614 -36.12477 -35.45247 -33.07672 -31.98436 -31.57134 -30.21574 -29.70756 -27.46842 -26.84983 -24.68778 -23.38620 -22.98474 -22.64506 -21.22509 -20.82200 -19.50709 -18.54328 -17.85554 -17.63713 -17.11465 -16.65797 -16.35213 -16.04811 -15.97984 -15.71405 -15.53485 -15.04077 -14.60781 -14.52224 -14.13346 -14.03062 -13.80534 -13.62102 -13.47987 -13.30121 -12.91135 -12.89383 -12.65408 -12.55379 -12.39330 -12.26203 -12.17066 -11.91442 -11.56409 -11.34757 -11.17840 -10.28844 -9.92657 -9.48802 -9.27238 -9.12964 -8.70889 -8.23866 -6.43259 0.10419 0.50442 0.66744 0.98274 1.31470 1.42412 1.48595 1.80920 1.91354 2.18050 2.23201 2.27621 2.74651 2.99582 3.66133 3.76889 3.85804 4.03726 4.06558 4.22588 4.25894 4.38393 4.46145 4.53921 4.56797 4.63868 4.70893 4.84127 4.88282 4.98957 5.04876 5.09616 5.20614 5.28549 5.42691 5.54329 5.56612 5.73077 5.76524 5.86057 5.90279 6.01529 6.06392 6.27678 6.30878 6.44526 6.53267 6.69980 6.85038 6.93417 7.48962 8.25211 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.004321 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.002576 B = 6478.054620 C = 8156.657345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.488 5.488 3 C 0.061 3.939 4 C -0.220 4.220 5 C -0.110 4.110 6 C -0.095 4.095 7 C -0.131 4.131 8 C -0.140 4.140 9 C 0.136 3.864 10 N -0.674 5.674 11 C 0.557 3.443 12 O -0.554 6.554 13 C -0.282 4.282 14 C -0.057 4.057 15 C -0.229 4.229 16 C -0.091 4.091 17 C -0.172 4.172 18 C 0.117 3.883 19 C -0.460 4.460 20 H 0.086 0.914 21 C 0.034 3.966 22 N -0.819 5.819 23 Si 0.977 3.023 24 H -0.259 1.259 25 H -0.257 1.257 26 H -0.274 1.274 27 C 0.049 3.951 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.212 0.788 32 H 0.172 0.828 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 17.135 -4.268 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.171 5.171 3 C -0.064 4.064 4 C -0.245 4.245 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.150 4.150 8 C -0.162 4.162 9 C 0.040 3.960 10 N -0.322 5.322 11 C 0.352 3.648 12 O -0.433 6.433 13 C -0.287 4.287 14 C -0.075 4.075 15 C -0.248 4.248 16 C -0.110 4.110 17 C -0.191 4.191 18 C 0.113 3.887 19 C -0.489 4.489 20 H 0.104 0.896 21 C -0.182 4.182 22 N -0.446 5.446 23 Si 0.799 3.201 24 H -0.183 1.183 25 H -0.181 1.181 26 H -0.199 1.199 27 C -0.059 4.059 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.228 0.772 32 H 0.190 0.810 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.121 0.879 36 H 0.249 0.751 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.287 16.470 -3.870 17.235 hybrid contribution -0.009 -1.029 0.221 1.052 sum 3.278 15.442 -3.649 16.202 Atomic orbital electron populations 1.22362 0.75934 1.04981 1.04771 1.44024 1.06785 1.03730 1.62576 1.22504 0.90059 0.91980 1.01841 1.21980 0.97478 0.91247 1.13770 1.19557 0.91073 0.95355 1.05626 1.20498 0.99100 0.91194 1.00644 1.20688 0.95074 0.96652 1.02629 1.20858 0.92873 0.98524 1.03949 1.16942 0.84704 0.89285 1.05093 1.43549 1.08040 1.26935 1.53712 1.18626 0.88673 0.79418 0.78045 1.90661 1.52664 1.58821 1.41182 1.19701 0.92800 1.02700 1.13455 1.21010 0.92984 0.97904 0.95613 1.20812 0.96796 0.98378 1.08830 1.21224 0.98571 0.94957 0.96233 1.21376 0.92740 1.00713 1.04304 1.17833 0.92698 0.90193 0.87941 1.20259 1.11296 0.91687 1.25663 0.89645 1.26784 0.97403 0.98811 0.95172 1.69718 1.32660 1.11128 1.31052 0.85326 0.78374 0.77184 0.79258 1.18291 1.18107 1.19927 1.18142 0.92199 0.86588 1.08924 0.88978 0.91745 0.86783 0.77159 0.81016 0.83216 0.84410 0.87859 0.75138 0.85443 0.84569 0.85946 0.87811 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 10.35 127.77 1.32 2.36 16 2 N -0.49 -11.51 3.18 -538.86 -1.71 -13.22 16 3 C 0.06 1.10 11.29 83.02 0.94 2.04 16 4 C -0.22 -4.62 11.08 23.51 0.26 -4.36 16 5 C -0.11 -3.20 6.37 -20.21 -0.13 -3.33 16 6 C -0.10 -2.68 10.05 22.27 0.22 -2.45 16 7 C -0.13 -4.25 9.97 22.02 0.22 -4.03 16 8 C -0.14 -5.62 8.64 22.43 0.19 -5.43 16 9 C 0.14 5.19 6.27 38.26 0.24 5.43 16 10 N -0.67 -25.90 4.44 -306.16 -1.36 -27.26 16 11 C 0.56 26.90 7.44 86.65 0.64 27.54 16 12 O -0.55 -30.87 11.30 -4.14 -0.05 -30.92 16 13 C -0.28 -13.76 5.92 -19.70 -0.12 -13.88 16 14 C -0.06 -2.22 9.53 22.51 0.21 -2.00 16 15 C -0.23 -8.61 10.03 22.41 0.22 -8.38 16 16 C -0.09 -3.85 10.01 22.26 0.22 -3.63 16 17 C -0.17 -8.76 8.62 22.72 0.20 -8.57 16 18 C 0.12 6.44 5.51 -21.10 -0.12 6.32 16 19 C -0.46 -26.62 7.80 23.41 0.18 -26.44 16 20 H 0.09 5.23 5.70 -2.91 -0.02 5.22 16 21 C 0.03 1.79 5.31 85.37 0.45 2.25 16 22 N -0.82 -43.56 11.02 21.88 0.24 -43.32 16 23 Si 0.98 42.16 29.57 68.60 2.03 44.19 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.05 1.57 6.82 39.11 0.27 1.84 16 28 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 1.41 5.83 -2.39 -0.01 1.39 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.14 3.81 8.06 -2.92 -0.02 3.79 16 35 H 0.10 4.82 6.48 -2.91 -0.02 4.80 16 36 H 0.41 12.82 4.70 -92.71 -0.44 12.38 16 37 H 0.13 3.81 6.41 -2.91 -0.02 3.79 16 38 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.10 5.53 6.54 -2.91 -0.02 5.51 16 41 H 0.29 13.96 8.29 -92.70 -0.77 13.19 16 Total: -1.00 -73.49 340.43 5.24 -68.25 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.65 Total: 37.00 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 5.44 Total: -34.72 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.83 Total: -83.80 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -73.49 5.24 -68.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638661397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.294 kcal (2) G-P(sol) polarization free energy of solvation -73.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds