Wall clock time and date at job start Tue Mar 31 2020 13:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86799 * 120.00030 * 2 1 4 4 H 1.48504 * 109.47047 * 270.00033 * 3 2 1 5 5 H 1.48504 * 109.47054 * 29.99954 * 3 2 1 6 6 H 1.48495 * 109.47153 * 150.00012 * 3 2 1 7 7 C 1.39930 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00327 * 197.88990 * 7 2 1 9 9 C 1.41417 * 119.99884 * 17.89338 * 7 2 1 10 10 C 1.40787 * 120.20305 * 24.44382 * 9 7 2 11 11 C 1.37650 * 119.88775 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32711 * 359.74205 * 11 10 9 13 13 C 1.39295 * 120.41906 * 0.51643 * 12 11 10 14 14 N 1.39688 * 119.94498 * 179.76377 * 13 12 11 15 15 C 1.46495 * 120.00468 * 359.72212 * 14 13 12 16 16 C 1.50703 * 109.47194 * 180.02562 * 15 14 13 17 17 C 1.38140 * 120.02750 * 259.99829 * 16 15 14 18 18 C 1.38264 * 120.06506 * 179.72549 * 17 16 15 19 19 C 1.38305 * 120.12795 * 0.02562 * 18 17 16 20 20 C 1.38097 * 120.06718 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.03532 * 79.72444 * 16 15 14 22 22 N 1.40197 * 120.06377 * 0.25081 * 21 16 15 23 23 C 1.34735 * 126.83757 * 179.97438 * 22 21 16 24 24 N 1.30851 * 108.02668 * 180.02562 * 23 22 21 25 25 C 1.33256 * 109.84930 * 0.02562 * 24 23 22 26 26 N 1.30754 * 108.99720 * 359.71377 * 25 24 23 27 27 C 1.38310 * 120.10204 * 359.48464 * 13 12 11 28 28 H 0.97007 * 119.99892 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.05628 * 0.02562 * 10 9 7 30 30 H 1.08006 * 119.83415 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.79006 * 180.27672 * 12 11 10 32 32 H 0.97000 * 119.99651 * 179.72688 * 14 13 12 33 33 H 1.08995 * 109.47028 * 59.99938 * 15 14 13 34 34 H 1.09004 * 109.47247 * 300.00110 * 15 14 13 35 35 H 1.08001 * 119.97147 * 359.70473 * 17 16 15 36 36 H 1.07992 * 119.93331 * 180.02562 * 18 17 16 37 37 H 1.07998 * 119.96178 * 180.02562 * 19 18 17 38 38 H 1.08004 * 120.02699 * 179.97438 * 20 19 18 39 39 H 1.07997 * 125.98391 * 0.02562 * 23 22 21 40 40 H 1.07998 * 125.50091 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.16638 * 180.22873 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3522 -2.4067 -0.3774 10 6 0.2216 -2.3603 -1.2151 11 6 -0.4120 -3.5273 -1.5774 12 6 0.0603 -4.7489 -1.1261 13 6 1.1745 -4.8098 -0.2924 14 7 1.6394 -6.0466 0.1608 15 6 0.9517 -7.2778 -0.2357 16 6 1.6467 -8.4632 0.3833 17 6 2.5253 -9.2192 -0.3681 18 6 3.1677 -10.3035 0.2007 19 6 2.9324 -10.6347 1.5227 20 6 2.0551 -9.8825 2.2788 21 6 1.4089 -8.7928 1.7106 22 7 0.5180 -8.0271 2.4757 23 6 0.1875 -8.2230 3.7671 24 7 -0.6715 -7.2974 4.1102 25 6 -0.9134 -6.4976 3.0722 26 7 -0.2042 -6.9002 2.0502 27 6 1.8247 -3.6481 0.0826 28 1 -0.4850 0.8401 0.0004 29 1 -0.1479 -1.4106 -1.5729 30 1 -1.2790 -3.4907 -2.2205 31 1 -0.4409 -5.6595 -1.4194 32 1 2.4177 -6.0903 0.7382 33 1 0.9708 -7.3712 -1.3214 34 1 -0.0823 -7.2432 0.1078 35 1 2.7105 -8.9634 -1.4009 36 1 3.8545 -10.8928 -0.3886 37 1 3.4359 -11.4819 1.9644 38 1 1.8715 -10.1420 3.3110 39 1 0.5654 -9.0066 4.4070 40 1 -1.5830 -5.6502 3.0761 41 1 2.6910 -3.6944 0.7259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656261876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:09 Heat of formation + Delta-G solvation = 158.363303 kcal Electronic energy + Delta-G solvation = -25583.222838 eV Core-core repulsion = 22044.201453 eV Total energy + Delta-G solvation = -3539.021385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33276 -39.67337 -37.64235 -35.15782 -34.24868 -33.24219 -31.66601 -31.09270 -29.70635 -29.61756 -27.74771 -25.23306 -24.96227 -24.16167 -22.63138 -21.42034 -21.08832 -20.51633 -19.95201 -18.32297 -17.26966 -16.32037 -16.02605 -15.85243 -15.34121 -15.18564 -14.98065 -14.53707 -14.19377 -14.13555 -14.03399 -13.52554 -13.24363 -13.01028 -12.70982 -12.43504 -12.21927 -12.02974 -11.65872 -11.35293 -11.25385 -11.01940 -10.95713 -10.92595 -10.50499 -10.33465 -9.93689 -9.83344 -9.74456 -9.26177 -9.17103 -9.09573 -8.58508 -8.50898 -7.28840 -6.63522 -6.05549 -4.22876 0.53688 0.94892 1.94154 2.15138 2.92262 2.94790 3.13804 3.17480 3.31526 3.40437 3.48710 4.02661 4.15007 4.25386 4.43823 4.55749 4.73187 4.75696 4.80630 4.84022 4.99450 5.24427 5.30364 5.56780 5.70131 5.89474 5.94533 6.08811 6.12046 6.23269 6.30519 6.41876 6.46380 6.58616 6.66726 6.90865 7.12771 7.16296 7.19756 7.43872 7.50413 7.88956 8.01635 8.01951 8.23539 8.35188 8.61231 8.74768 8.88789 9.08939 9.22104 10.32513 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.003272 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.877045 B = 8554.266290 C = 9163.587595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.143 3.857 10 C -0.201 4.201 11 C -0.075 4.075 12 C -0.297 4.297 13 C 0.239 3.761 14 N -0.744 5.744 15 C 0.175 3.825 16 C -0.091 4.091 17 C -0.081 4.081 18 C -0.126 4.126 19 C -0.094 4.094 20 C -0.139 4.139 21 C 0.164 3.836 22 N -0.334 5.334 23 C 0.247 3.753 24 N -0.535 5.535 25 C 0.199 3.801 26 N -0.266 5.266 27 C -0.292 4.292 28 H 0.278 0.722 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.382 0.618 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.217 0.783 40 H 0.221 0.779 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -19.740 3.660 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.092 0.908 9 C 0.140 3.860 10 C -0.222 4.222 11 C -0.094 4.094 12 C -0.320 4.320 13 C 0.140 3.860 14 N -0.376 5.376 15 C 0.050 3.950 16 C -0.094 4.094 17 C -0.100 4.100 18 C -0.145 4.145 19 C -0.113 4.113 20 C -0.160 4.160 21 C 0.070 3.930 22 N -0.118 5.118 23 C -0.048 4.048 24 N -0.260 5.260 25 C -0.103 4.103 26 N -0.090 5.090 27 C -0.316 4.316 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.214 0.786 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.233 0.767 40 H 0.237 0.763 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.612 -19.255 3.219 19.696 hybrid contribution 0.748 0.575 0.476 1.056 sum 3.360 -18.680 3.694 19.336 Atomic orbital electron populations 1.69872 1.07480 1.28797 1.35690 1.25862 0.94655 1.01027 0.92350 0.86388 0.80516 0.80994 0.79198 1.19373 1.20445 1.18792 1.19537 0.98006 0.91374 1.40755 0.90847 1.17305 0.90303 0.91188 0.87212 1.21135 1.00648 0.96577 1.03796 1.20424 0.97599 0.92962 0.98460 1.19795 1.03165 0.96251 1.12750 1.17351 0.92642 0.83623 0.92372 1.44124 1.33652 1.02211 1.57577 1.20129 0.97061 0.80994 0.96819 1.19985 0.98753 0.98806 0.91849 1.21120 0.94417 0.94155 1.00353 1.21260 1.00269 0.97576 0.95411 1.20965 0.97059 0.99204 0.94071 1.20782 0.99284 0.95206 1.00759 1.17525 0.92561 0.92030 0.90871 1.47940 1.32649 1.21830 1.09406 1.26093 0.94675 0.99141 0.84911 1.70602 1.18076 1.06700 1.30662 1.26376 0.98598 0.99463 0.85835 1.78733 1.10060 0.98269 1.21917 1.20344 1.06716 0.91640 1.12869 0.91162 0.86938 0.89884 0.89928 0.78613 0.93141 0.89619 0.84736 0.85248 0.84927 0.85133 0.76692 0.76296 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.31 10.96 55.55 0.61 -20.70 16 2 C 0.08 2.05 5.14 -17.35 -0.09 1.96 16 3 Si 0.90 19.41 29.60 -169.99 -5.03 14.38 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.47 -12.97 9.05 -37.74 -0.34 -13.31 16 8 H 0.07 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.14 3.99 5.57 -106.85 -0.60 3.39 16 10 C -0.20 -5.48 8.70 -38.83 -0.34 -5.81 16 11 C -0.08 -1.86 10.02 -39.69 -0.40 -2.26 16 12 C -0.30 -6.92 9.32 -39.08 -0.36 -7.29 16 13 C 0.24 5.51 6.64 -83.86 -0.56 4.96 16 14 N -0.74 -13.97 4.95 -59.86 -0.30 -14.27 16 15 C 0.17 2.79 4.06 -5.19 -0.02 2.76 16 16 C -0.09 -1.16 5.26 -104.44 -0.55 -1.71 16 17 C -0.08 -0.83 9.66 -39.61 -0.38 -1.22 16 18 C -0.13 -1.00 10.04 -39.55 -0.40 -1.40 16 19 C -0.09 -0.68 10.04 -39.61 -0.40 -1.08 16 20 C -0.14 -1.19 9.47 -39.41 -0.37 -1.56 16 21 C 0.16 1.96 6.68 -83.59 -0.56 1.40 16 22 N -0.33 -4.50 3.82 -11.81 -0.05 -4.55 16 23 C 0.25 2.88 11.98 -90.36 -1.08 1.80 16 24 N -0.53 -7.65 11.19 -15.74 -0.18 -7.83 16 25 C 0.20 3.08 13.03 -91.77 -1.20 1.89 16 26 N -0.27 -4.39 8.25 29.30 0.24 -4.15 16 27 C -0.29 -7.52 9.63 -38.68 -0.37 -7.89 16 28 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 29 H 0.11 3.16 6.15 -52.49 -0.32 2.84 16 30 H 0.08 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.08 1.77 6.70 -52.49 -0.35 1.42 16 32 H 0.38 7.06 8.47 -40.82 -0.35 6.71 16 33 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 34 H 0.09 1.51 5.63 -51.93 -0.29 1.22 16 35 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.74 6.81 -52.48 -0.36 0.38 16 39 H 0.22 1.41 7.10 -52.49 -0.37 1.03 16 40 H 0.22 3.00 8.06 -52.49 -0.42 2.57 16 41 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -32.18 347.57 -12.01 -44.19 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -4.53 Total: 13.06 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -8.01 Total: -25.37 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.33 Total: -51.49 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.18 -12.01 -44.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656261876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.549 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds