Wall clock time and date at job start Tue Mar 31 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 5 9 9 C 1.47578 * 120.00056 * 180.27917 * 7 6 5 10 10 C 1.39399 * 120.16932 * 359.72007 * 9 7 6 11 11 C 1.38470 * 120.48573 * 179.76771 * 10 9 7 12 12 F 1.35103 * 119.78525 * 180.24043 * 11 10 9 13 13 C 1.38181 * 120.42428 * 0.51232 * 11 10 9 14 14 C 1.39372 * 119.91648 * 359.75306 * 13 11 10 15 15 C 1.46847 * 134.26564 * 180.02562 * 14 13 11 16 16 C 1.33976 * 106.14985 * 179.97438 * 15 14 13 17 17 O 1.34460 * 110.12723 * 359.97438 * 16 15 14 18 18 C 1.34624 * 110.92367 * 0.02562 * 17 16 15 19 19 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 20 20 C 1.36938 * 119.99628 * 85.00236 * 19 2 1 21 21 H 1.08001 * 120.00307 * 0.02562 * 20 19 2 22 22 C 1.38816 * 120.00044 * 179.97438 * 20 19 2 23 23 N 1.31609 * 120.00152 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99773 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47170 * 89.99582 * 24 22 20 26 26 H 1.48507 * 109.46991 * 209.99967 * 24 22 20 27 27 H 1.48502 * 109.46956 * 329.99388 * 24 22 20 28 28 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 29 29 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 30 30 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 32 32 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 33 33 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 34 34 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 36 36 H 1.08007 * 119.75456 * 0.03115 * 10 9 7 37 37 H 1.08001 * 120.04112 * 179.76632 * 13 11 10 38 38 H 1.07996 * 126.92052 * 359.97438 * 15 14 13 39 39 H 1.07994 * 124.93471 * 180.02562 * 16 15 14 40 40 H 0.97002 * 120.00479 * 265.00508 * 19 2 1 41 41 H 0.97005 * 120.00432 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1607 -0.8037 2.0192 9 6 5.8666 -2.0448 3.9747 10 6 4.9677 -2.6607 4.8441 11 6 5.4227 -3.3238 5.9713 12 9 4.5394 -3.9200 6.8017 13 6 6.7741 -3.3750 6.2552 14 6 7.6877 -2.7604 5.4007 15 6 9.1494 -2.6206 5.3923 16 6 9.4498 -1.9127 4.2952 17 8 8.3272 -1.6007 3.6242 18 6 7.2407 -2.0893 4.2512 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0076 -2.3757 21 1 1.8927 1.0404 -2.4242 22 6 2.6123 -0.6618 -3.5091 23 7 2.7384 -0.0052 -4.6426 24 14 3.0565 -2.4743 -3.4251 25 1 1.8594 -3.2927 -3.7450 26 1 4.1323 -2.7662 -4.4063 27 1 3.5310 -2.8048 -2.0574 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 1.7515 -1.7716 1.2056 32 1 1.6053 -0.2618 2.1370 33 1 3.8532 0.4367 1.3574 34 1 3.9993 -1.0730 0.4260 35 1 3.4256 -1.7352 3.1112 36 1 3.9087 -2.6239 4.6347 37 1 7.1220 -3.8907 7.1381 38 1 9.8426 -3.0100 6.1232 39 1 10.4485 -1.6340 3.9933 40 1 2.2490 -1.6319 -1.1526 41 1 3.0618 -0.4624 -5.4347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662940390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:49 Heat of formation + Delta-G solvation = -36.541435 kcal Electronic energy + Delta-G solvation = -25857.148862 eV Core-core repulsion = 21846.613798 eV Total energy + Delta-G solvation = -4010.535065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.30828 -42.89683 -39.84604 -37.74538 -36.76180 -34.58698 -33.34678 -32.24693 -30.84665 -29.95607 -29.57927 -28.28739 -25.01954 -23.65554 -22.93766 -22.72811 -21.82828 -20.76058 -19.91050 -18.48037 -18.16942 -17.63127 -17.40986 -16.63009 -16.46226 -15.85078 -15.80787 -15.54529 -15.28927 -14.79422 -14.48158 -14.01908 -13.70674 -13.58662 -13.54287 -13.32362 -13.02145 -12.94909 -12.52811 -12.19415 -12.19011 -11.97334 -11.88377 -11.26019 -11.05944 -10.79387 -10.69828 -10.64670 -10.44058 -10.07921 -9.88635 -9.55921 -9.06816 -8.96730 -8.91436 -8.73699 -7.25600 -5.73997 -3.09654 -0.00815 0.67140 1.78154 2.36629 2.59365 2.98868 3.32917 3.40324 3.42704 3.48473 3.56977 3.96263 4.07955 4.37986 4.58457 4.62069 4.68662 4.81852 4.99188 5.13314 5.15027 5.18659 5.33321 5.44447 5.47742 5.57119 5.60675 5.62515 5.85022 5.94125 6.05845 6.07765 6.21506 6.24712 6.33170 6.46936 6.51251 6.70074 6.77827 6.97322 7.41698 8.01839 8.13301 8.44893 9.23113 9.95672 10.14620 11.44493 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002984 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.785787 B = 9381.271490 C =10370.446083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.120 3.880 6 N -0.722 5.722 7 C 0.550 3.450 8 O -0.514 6.514 9 C -0.085 4.085 10 C -0.096 4.096 11 C 0.079 3.921 12 F -0.132 7.132 13 C -0.084 4.084 14 C -0.114 4.114 15 C -0.216 4.216 16 C 0.024 3.976 17 O -0.165 6.165 18 C 0.096 3.904 19 N -0.748 5.748 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.883 3.117 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.396 0.604 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.214 0.786 40 H 0.360 0.640 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.595 -7.246 27.036 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.176 4.176 5 C -0.002 4.002 6 N -0.374 5.374 7 C 0.336 3.664 8 O -0.390 6.390 9 C -0.089 4.089 10 C -0.116 4.116 11 C 0.060 3.940 12 F -0.111 7.111 13 C -0.103 4.103 14 C -0.115 4.115 15 C -0.235 4.235 16 C -0.042 4.042 17 O -0.064 6.064 18 C 0.046 3.954 19 N -0.392 5.392 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.231 0.769 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.182 0.818 39 H 0.230 0.770 40 H 0.193 0.807 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.112 -6.510 26.041 28.347 hybrid contribution -0.055 -1.811 0.517 1.884 sum 9.057 -8.321 26.558 29.268 Atomic orbital electron populations 1.22393 0.98549 1.00875 1.00563 1.20121 0.92097 0.95889 0.84893 0.92335 1.22127 0.93769 1.01823 0.99833 1.21531 0.94483 0.97641 0.86566 1.46027 1.06641 1.56988 1.27766 1.17897 0.82949 0.80752 0.84814 1.90891 1.55101 1.44754 1.48281 1.18765 0.88483 1.03818 0.97835 1.21082 1.00393 0.97136 0.92949 1.17105 0.86780 0.99263 0.90875 1.91542 1.67666 1.81597 1.70275 1.20545 0.90266 0.99453 1.00041 1.19662 0.94192 1.01743 0.95873 1.22471 0.92598 1.06801 1.01634 1.24260 0.90295 0.97612 0.92036 1.84245 1.12777 1.63060 1.46306 1.19318 0.87686 0.96479 0.91901 1.42831 1.79694 1.09429 1.07230 1.19058 1.36954 0.95599 0.85553 0.89161 1.24653 1.01383 0.97392 0.95602 1.69691 1.52690 1.35535 1.00274 0.86580 0.78043 0.86983 0.77085 1.21198 1.21771 1.20374 0.94200 0.92193 0.93618 0.91643 0.91288 0.91010 0.89946 0.76937 0.83024 0.83631 0.81809 0.76981 0.80700 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 2 C 0.18 3.24 2.89 -67.93 -0.20 3.05 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.90 4.87 -26.73 -0.13 -2.03 16 5 C 0.12 1.87 5.56 -4.04 -0.02 1.85 16 6 N -0.72 -9.26 5.51 -61.34 -0.34 -9.59 16 7 C 0.55 8.31 7.77 -12.45 -0.10 8.22 16 8 O -0.51 -10.10 16.11 -5.43 -0.09 -10.19 16 9 C -0.09 -1.04 5.88 -104.90 -0.62 -1.66 16 10 C -0.10 -0.88 9.50 -39.06 -0.37 -1.25 16 11 C 0.08 0.71 7.28 -39.52 -0.29 0.42 16 12 F -0.13 -1.19 17.26 2.25 0.04 -1.15 16 13 C -0.08 -0.70 10.06 -39.18 -0.39 -1.09 16 14 C -0.11 -1.11 6.39 -105.18 -0.67 -1.79 16 15 C -0.22 -1.62 11.15 -37.60 -0.42 -2.04 16 16 C 0.02 0.19 11.96 29.23 0.35 0.54 16 17 O -0.17 -2.14 9.92 -6.31 -0.06 -2.20 16 18 C 0.10 1.21 6.99 -38.02 -0.27 0.94 16 19 N -0.75 -17.18 4.38 -53.42 -0.23 -17.41 16 20 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.64 13.97 55.49 0.78 -28.86 16 24 Si 0.88 22.49 27.74 -169.99 -4.71 17.78 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.58 7.75 -51.93 -0.40 1.18 16 35 H 0.40 3.59 6.49 -40.82 -0.26 3.33 16 36 H 0.15 0.99 6.37 -52.48 -0.33 0.65 16 37 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 41 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -35.96 355.04 -7.34 -43.30 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.05 Total: 7.02 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.02 Total: -4.04 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.20 Total: -55.87 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.15 Total: -12.39 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.96 -7.34 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662940390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.760 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds