Wall clock time and date at job start Tue Mar 31 2020 12:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 5 9 9 C 1.47578 * 120.00056 * 180.27917 * 7 6 5 10 10 C 1.39399 * 120.16932 * 359.72007 * 9 7 6 11 11 C 1.38470 * 120.48573 * 179.76771 * 10 9 7 12 12 F 1.35103 * 119.78525 * 180.24043 * 11 10 9 13 13 C 1.38181 * 120.42428 * 0.51232 * 11 10 9 14 14 C 1.39372 * 119.91648 * 359.75306 * 13 11 10 15 15 C 1.46847 * 134.26564 * 180.02562 * 14 13 11 16 16 C 1.33976 * 106.14985 * 179.97438 * 15 14 13 17 17 O 1.34460 * 110.12723 * 359.97438 * 16 15 14 18 18 C 1.34624 * 110.92367 * 0.02562 * 17 16 15 19 19 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 20 20 C 1.36938 * 119.99628 * 85.00236 * 19 2 1 21 21 H 1.08001 * 120.00307 * 0.02562 * 20 19 2 22 22 C 1.38816 * 120.00044 * 179.97438 * 20 19 2 23 23 N 1.31609 * 120.00152 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99773 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47170 * 89.99582 * 24 22 20 26 26 H 1.48507 * 109.46991 * 209.99967 * 24 22 20 27 27 H 1.48502 * 109.46956 * 329.99388 * 24 22 20 28 28 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 29 29 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 30 30 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 32 32 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 33 33 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 34 34 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 36 36 H 1.08007 * 119.75456 * 0.03115 * 10 9 7 37 37 H 1.08001 * 120.04112 * 179.76632 * 13 11 10 38 38 H 1.07996 * 126.92052 * 359.97438 * 15 14 13 39 39 H 1.07994 * 124.93471 * 180.02562 * 16 15 14 40 40 H 0.97002 * 120.00479 * 265.00508 * 19 2 1 41 41 H 0.97005 * 120.00432 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1607 -0.8037 2.0192 9 6 5.8666 -2.0448 3.9747 10 6 4.9677 -2.6607 4.8441 11 6 5.4227 -3.3238 5.9713 12 9 4.5394 -3.9200 6.8017 13 6 6.7741 -3.3750 6.2552 14 6 7.6877 -2.7604 5.4007 15 6 9.1494 -2.6206 5.3923 16 6 9.4498 -1.9127 4.2952 17 8 8.3272 -1.6007 3.6242 18 6 7.2407 -2.0893 4.2512 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0076 -2.3757 21 1 1.8927 1.0404 -2.4242 22 6 2.6123 -0.6618 -3.5091 23 7 2.7384 -0.0052 -4.6426 24 14 3.0565 -2.4743 -3.4251 25 1 1.8594 -3.2927 -3.7450 26 1 4.1323 -2.7662 -4.4063 27 1 3.5310 -2.8048 -2.0574 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 1.7515 -1.7716 1.2056 32 1 1.6053 -0.2618 2.1370 33 1 3.8532 0.4367 1.3574 34 1 3.9993 -1.0730 0.4260 35 1 3.4256 -1.7352 3.1112 36 1 3.9087 -2.6239 4.6347 37 1 7.1220 -3.8907 7.1381 38 1 9.8426 -3.0100 6.1232 39 1 10.4485 -1.6340 3.9933 40 1 2.2490 -1.6319 -1.1526 41 1 3.0618 -0.4624 -5.4347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662940390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:47 Heat of formation + Delta-G solvation = -61.468901 kcal Electronic energy + Delta-G solvation = -25858.229799 eV Core-core repulsion = 21846.613798 eV Total energy + Delta-G solvation = -4011.616001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.98105 -43.62115 -40.96225 -38.60423 -38.22359 -36.00435 -34.35305 -33.93175 -31.90888 -31.28726 -30.52086 -29.53835 -26.04909 -25.36367 -24.03851 -23.58764 -22.72886 -21.92473 -21.30783 -19.76491 -19.18721 -18.90910 -18.24501 -17.43672 -17.32132 -17.04548 -16.76920 -16.53988 -16.34538 -16.06810 -15.84381 -15.38593 -15.21921 -14.62279 -14.56518 -14.31440 -14.18837 -13.93546 -13.70789 -13.67834 -13.54681 -12.95253 -12.91346 -12.65575 -12.59791 -12.30494 -12.25460 -12.07713 -11.78635 -11.62897 -11.39288 -11.16697 -10.98396 -10.26023 -9.69256 -9.43465 -9.29638 -8.01728 -5.33202 -0.75266 -0.06510 1.10680 1.34440 1.38735 1.44696 1.72113 1.72616 1.92838 2.43494 2.47703 2.87686 3.22208 3.30670 3.43163 3.62712 3.72386 3.84919 3.94309 3.98603 4.14992 4.26496 4.26716 4.31613 4.60857 4.63097 4.64865 4.73726 4.78708 4.83528 4.93434 5.00163 5.07419 5.13605 5.31429 5.33828 5.36795 5.43709 5.59588 5.80514 6.01727 6.23190 6.39389 7.06737 7.10362 7.87697 8.04718 9.20474 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002984 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.785787 B = 9381.271490 C =10370.446083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.119 4.119 5 C 0.127 3.873 6 N -0.703 5.703 7 C 0.548 3.452 8 O -0.573 6.573 9 C -0.112 4.112 10 C -0.080 4.080 11 C 0.074 3.926 12 F -0.129 7.129 13 C -0.067 4.067 14 C -0.123 4.123 15 C -0.205 4.205 16 C 0.007 3.993 17 O -0.205 6.205 18 C 0.063 3.937 19 N -0.752 5.752 20 C -0.221 4.221 21 H 0.057 0.943 22 C -0.067 4.067 23 N -0.987 5.987 24 Si 0.951 3.049 25 H -0.274 1.274 26 H -0.302 1.302 27 H -0.257 1.257 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.417 0.583 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.200 0.800 39 H 0.248 0.752 40 H 0.364 0.636 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.206 -9.737 31.184 33.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 H 0.060 0.940 4 C -0.158 4.158 5 C 0.003 3.997 6 N -0.356 5.356 7 C 0.335 3.665 8 O -0.454 6.454 9 C -0.116 4.116 10 C -0.099 4.099 11 C 0.055 3.945 12 F -0.108 7.108 13 C -0.086 4.086 14 C -0.124 4.124 15 C -0.223 4.223 16 C -0.056 4.056 17 O -0.105 6.105 18 C 0.014 3.986 19 N -0.396 5.396 20 C -0.352 4.352 21 H 0.075 0.925 22 C -0.258 4.258 23 N -0.638 5.638 24 Si 0.779 3.221 25 H -0.200 1.200 26 H -0.229 1.229 27 H -0.182 1.182 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.256 0.744 36 H 0.196 0.804 37 H 0.195 0.805 38 H 0.218 0.782 39 H 0.263 0.737 40 H 0.197 0.803 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.663 -9.027 30.296 32.778 hybrid contribution 0.074 -0.951 -0.628 1.142 sum 8.737 -9.978 29.668 32.497 Atomic orbital electron populations 1.22244 0.96521 1.01657 1.00989 1.20433 0.93429 0.95297 0.84855 0.93970 1.21992 0.91959 1.02786 0.99033 1.21256 0.95748 0.96520 0.86184 1.45762 1.06515 1.56304 1.27067 1.18412 0.82971 0.79950 0.85125 1.90852 1.56592 1.47438 1.50484 1.18596 0.89174 1.05994 0.97818 1.21275 1.01144 0.95402 0.92065 1.17119 0.87132 0.99428 0.90842 1.91557 1.67611 1.81528 1.70099 1.20907 0.89803 0.97746 1.00147 1.19992 0.95608 1.01623 0.95195 1.22910 0.91869 1.05745 1.01763 1.25082 0.90408 0.97877 0.92263 1.84208 1.14162 1.64110 1.48016 1.19771 0.87971 0.97628 0.93272 1.42869 1.79934 1.09571 1.07190 1.19037 1.34381 0.94414 0.87347 0.92504 1.25451 1.02737 1.02266 0.95368 1.69875 1.55170 1.37594 1.01189 0.85467 0.77643 0.81346 0.77656 1.19998 1.22889 1.18225 0.90307 0.95279 0.92600 0.89760 0.86969 0.92678 0.94007 0.74387 0.80410 0.80512 0.78246 0.73654 0.80319 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.49 71.98 0.68 -4.03 16 2 C 0.17 5.84 2.89 44.99 0.13 5.97 16 3 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 4 C -0.12 -2.95 4.87 30.59 0.15 -2.80 16 5 C 0.13 3.88 5.56 86.38 0.48 4.36 16 6 N -0.70 -17.16 5.51 -466.23 -2.57 -19.73 16 7 C 0.55 16.80 7.77 86.71 0.67 17.47 16 8 O -0.57 -23.86 16.11 6.23 0.10 -23.76 16 9 C -0.11 -2.69 5.88 -20.05 -0.12 -2.81 16 10 C -0.08 -1.27 9.50 22.61 0.21 -1.06 16 11 C 0.07 1.09 7.28 22.31 0.16 1.26 16 12 F -0.13 -1.86 17.26 44.97 0.78 -1.08 16 13 C -0.07 -0.90 10.06 22.53 0.23 -0.68 16 14 C -0.12 -2.18 6.39 -20.22 -0.13 -2.31 16 15 C -0.20 -2.57 11.15 23.55 0.26 -2.30 16 16 C 0.01 0.11 11.96 66.85 0.80 0.91 16 17 O -0.20 -5.49 9.92 3.07 0.03 -5.46 16 18 C 0.06 1.58 6.99 23.28 0.16 1.75 16 19 N -0.75 -34.38 4.38 -322.93 -1.41 -35.79 16 20 C -0.22 -12.70 10.41 84.03 0.87 -11.82 16 21 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 23 N -0.99 -65.19 13.97 21.65 0.30 -64.88 16 24 Si 0.95 47.31 27.74 68.60 1.90 49.21 16 25 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 27 H -0.26 -11.77 6.52 99.48 0.65 -11.12 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.04 1.63 7.75 -2.39 -0.02 1.61 16 35 H 0.42 6.27 6.49 -92.71 -0.60 5.67 16 36 H 0.18 1.66 6.37 -2.91 -0.02 1.65 16 37 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.25 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.36 16.11 5.66 -92.71 -0.52 15.59 16 41 H 0.26 16.16 8.31 -92.70 -0.77 15.39 16 Total: -1.00 -84.96 355.04 4.07 -80.89 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.10 Total: 20.30 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 5.04 Total: 0.31 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -3.68 Total: -120.40 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: 0.13 Total: -29.22 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.21 kcal Total: -84.96 4.07 -80.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662940390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.422 kcal (2) G-P(sol) polarization free energy of solvation -84.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds