Wall clock time and date at job start Tue Mar 31 2020 13:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99950 * 2 1 4 4 H 1.08003 * 119.99714 * 203.67535 * 3 2 1 5 5 C 1.38809 * 120.00029 * 23.66672 * 3 2 1 6 6 N 1.31618 * 120.00312 * 11.55420 * 5 3 2 7 7 Si 1.86805 * 119.99760 * 191.54746 * 5 3 2 8 8 H 1.48495 * 109.47308 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46851 * 120.00537 * 7 5 3 10 10 H 1.48505 * 109.46845 * 240.00036 * 7 5 3 11 11 C 1.46503 * 119.99952 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46898 * 270.00145 * 11 2 1 13 13 N 1.46503 * 109.46898 * 179.97438 * 12 11 2 14 14 C 1.34773 * 119.99808 * 179.97438 * 13 12 11 15 15 O 1.21622 * 120.00335 * 4.63634 * 14 13 12 16 16 C 1.47171 * 119.99765 * 184.62976 * 14 13 12 17 17 C 1.38401 * 126.88275 * 5.44693 * 16 14 13 18 18 C 1.39678 * 105.35940 * 180.10019 * 17 16 14 19 19 C 1.50698 * 126.06998 * 179.85177 * 18 17 16 20 20 F 1.39902 * 109.46952 * 184.71819 * 19 18 17 21 21 F 1.39899 * 109.47306 * 64.72071 * 19 18 17 22 22 F 1.39901 * 109.46934 * 304.71757 * 19 18 17 23 23 N 1.30859 * 107.85724 * 359.59357 * 18 17 16 24 24 N 1.28442 * 110.93362 * 0.25809 * 23 18 17 25 25 C 1.46499 * 125.19785 * 180.02562 * 24 23 18 26 26 H 1.09003 * 109.47301 * 275.10157 * 1 2 3 27 27 H 1.08999 * 109.47455 * 35.10297 * 1 2 3 28 28 H 1.08997 * 109.47041 * 155.10495 * 1 2 3 29 29 H 0.96992 * 120.00275 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.46968 * 150.00198 * 11 2 1 31 31 H 1.08998 * 109.47338 * 29.99788 * 11 2 1 32 32 H 1.08997 * 109.47267 * 60.00237 * 12 11 2 33 33 H 1.09004 * 109.47165 * 299.99674 * 12 11 2 34 34 H 0.97000 * 119.99717 * 0.02562 * 13 12 11 35 35 H 1.08001 * 127.32426 * 359.97438 * 17 16 14 36 36 H 1.08991 * 109.47473 * 88.39766 * 25 24 23 37 37 H 1.08993 * 109.47207 * 208.40413 * 25 24 23 38 38 H 1.09004 * 109.46663 * 328.40192 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1615 1.2252 -0.3756 5 6 1.5432 2.3375 0.4825 6 7 0.4085 2.2558 1.1446 7 14 2.3375 4.0032 0.1925 8 1 3.5977 3.8242 -0.5724 9 1 1.4085 4.8667 -0.5798 10 1 2.6373 4.6428 1.4988 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4433 13 7 3.1844 -2.9788 1.4439 14 6 3.5216 -3.5617 2.6114 15 8 3.1461 -3.0793 3.6628 16 6 4.3443 -4.7820 2.6139 17 6 4.9328 -5.3893 1.5183 18 6 5.5997 -6.5058 2.0281 19 6 6.3981 -7.5036 1.2294 20 9 6.8250 -8.5382 2.0689 21 9 7.5115 -6.8684 0.6690 22 9 5.5991 -8.0305 0.2091 23 7 5.4126 -6.5283 3.3231 24 7 4.6855 -5.5384 3.6990 25 6 4.2839 -5.2624 5.0805 26 1 -0.3634 0.0914 1.0236 27 1 -0.3634 0.8407 -0.5909 28 1 -0.3633 -0.9322 -0.4326 29 1 -0.0154 3.0605 1.4814 30 1 3.1499 -1.1386 -0.5133 31 1 1.6084 -2.0287 -0.5129 32 1 1.5000 -1.8399 1.9572 33 1 3.0416 -0.9499 1.9568 34 1 3.4269 -3.3992 0.6040 35 1 4.8849 -5.0693 0.4880 36 1 5.0429 -4.6470 5.5635 37 1 3.3312 -4.7329 5.0831 38 1 4.1789 -6.2020 5.6230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690945417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:36 Heat of formation + Delta-G solvation = -100.358177 kcal Electronic energy + Delta-G solvation = -26504.947758 eV Core-core repulsion = 21969.708613 eV Total energy + Delta-G solvation = -4535.239145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.18120 -48.69392 -48.69246 -44.02370 -40.58871 -37.85753 -36.00221 -34.87864 -33.44003 -32.44361 -29.86356 -29.57117 -27.90040 -26.32827 -25.63647 -24.06136 -22.64655 -22.32437 -21.41548 -19.68603 -19.58980 -19.36665 -18.74510 -17.94344 -17.63953 -17.42282 -16.73087 -16.60199 -16.36814 -15.55850 -15.54342 -15.42852 -15.39728 -15.10461 -14.99408 -14.91631 -14.82436 -14.81043 -14.24901 -14.16491 -13.93600 -13.79576 -13.31310 -13.11379 -12.80731 -12.62204 -12.47988 -12.38286 -12.04187 -12.00298 -11.74400 -11.36938 -10.79831 -10.66774 -10.49498 -10.14191 -8.83614 -7.83620 -5.34483 -0.07302 0.74301 0.86005 1.47074 1.49231 1.53989 1.59068 1.94043 2.06154 2.51620 2.55948 2.79651 3.31608 3.32943 3.38289 3.56600 3.82714 3.87661 4.20780 4.22741 4.26644 4.27476 4.34332 4.58156 4.69969 4.86985 4.88080 5.08579 5.09845 5.24363 5.33444 5.38133 5.66320 5.74811 6.29302 6.33233 6.50279 6.99847 7.14547 7.85071 8.27374 9.19390 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.020281 B = 0.002562 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.262816 B =10924.351322 C =11416.880957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.613 5.613 3 C -0.265 4.265 4 H 0.078 0.922 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.263 1.263 9 H -0.292 1.292 10 H -0.296 1.296 11 C 0.144 3.856 12 C 0.117 3.883 13 N -0.687 5.687 14 C 0.587 3.413 15 O -0.571 6.571 16 C -0.036 4.036 17 C -0.126 4.126 18 C -0.087 4.087 19 C 0.569 3.431 20 F -0.173 7.173 21 F -0.167 7.167 22 F -0.163 7.163 23 N -0.233 5.233 24 N -0.240 5.240 25 C 0.075 3.925 26 H 0.002 0.998 27 H 0.017 0.983 28 H 0.038 0.962 29 H 0.247 0.753 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.420 0.580 35 H 0.208 0.792 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.396 -20.993 0.456 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.336 5.336 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.187 1.187 9 H -0.218 1.218 10 H -0.224 1.224 11 C 0.017 3.983 12 C -0.009 4.009 13 N -0.340 5.340 14 C 0.372 3.628 15 O -0.451 6.451 16 C -0.163 4.163 17 C -0.154 4.154 18 C -0.242 4.242 19 C 0.513 3.487 20 F -0.154 7.154 21 F -0.148 7.148 22 F -0.145 7.145 23 N -0.070 5.070 24 N -0.029 5.029 25 C -0.063 4.063 26 H 0.021 0.979 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.258 0.742 35 H 0.225 0.775 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.241 -21.067 2.297 23.537 hybrid contribution 0.076 1.356 -0.643 1.503 sum 10.317 -19.711 1.654 22.309 Atomic orbital electron populations 1.20627 0.82516 0.96452 0.97726 1.44157 1.02309 1.01608 1.85490 1.19624 0.99156 0.86578 1.34120 0.90473 1.25845 0.98513 1.02083 0.98356 1.70229 1.20287 1.27666 1.40184 0.85209 0.78249 0.80118 0.76906 1.18669 1.21848 1.22368 1.21188 0.97444 0.87604 0.92093 1.22104 0.94510 0.82557 1.01764 1.45567 1.56538 1.23804 1.08048 1.17010 0.79229 0.82012 0.84596 1.90811 1.56377 1.65557 1.32335 1.21436 1.07640 0.98730 0.88532 1.22360 0.98341 0.93746 1.00928 1.21754 1.09201 1.01304 0.91973 1.16579 0.76871 0.78311 0.76975 1.93218 1.90404 1.60411 1.71377 1.93251 1.53854 1.81912 1.85792 1.93250 1.73553 1.87055 1.60605 1.73082 1.10363 1.09385 1.14169 1.46056 1.32086 1.15126 1.09670 1.22755 1.03760 1.05407 0.74388 0.97938 0.96382 0.94325 0.94329 0.91342 0.90444 0.93890 0.94232 0.74208 0.77500 0.87913 0.87454 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.06 9.02 127.77 1.15 9.21 16 2 N -0.61 -28.58 2.92 -726.93 -2.12 -30.70 16 3 C -0.26 -13.79 9.66 84.03 0.81 -12.97 16 4 H 0.08 3.84 7.85 -2.91 -0.02 3.82 16 5 C -0.05 -2.87 5.13 84.86 0.44 -2.44 16 6 N -0.94 -54.59 10.67 21.65 0.23 -54.36 16 7 Si 0.97 44.03 29.57 68.60 2.03 46.06 16 8 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 9 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 11 C 0.14 4.88 5.82 86.38 0.50 5.39 16 12 C 0.12 4.03 6.00 86.38 0.52 4.55 16 13 N -0.69 -17.09 5.54 -466.62 -2.58 -19.67 16 14 C 0.59 16.12 7.79 86.59 0.67 16.79 16 15 O -0.57 -19.91 14.73 -4.10 -0.06 -19.97 16 16 C -0.04 -0.81 6.96 40.79 0.28 -0.52 16 17 C -0.13 -2.24 10.43 22.66 0.24 -2.00 16 18 C -0.09 -1.76 6.50 43.05 0.28 -1.48 16 19 C 0.57 10.46 3.51 71.24 0.25 10.71 16 20 F -0.17 -3.49 17.15 44.97 0.77 -2.71 16 21 F -0.17 -3.04 17.30 44.97 0.78 -2.26 16 22 F -0.16 -2.82 17.30 44.97 0.78 -2.05 16 23 N -0.23 -5.23 11.68 -47.49 -0.55 -5.79 16 24 N -0.24 -5.24 3.75 -356.03 -1.33 -6.57 16 25 C 0.08 1.25 10.82 127.77 1.38 2.63 16 26 H 0.00 0.12 7.33 -2.39 -0.02 0.10 16 27 H 0.02 0.90 7.35 -2.39 -0.02 0.89 16 28 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 29 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.07 2.12 8.03 -2.39 -0.02 2.10 16 31 H 0.08 2.16 7.86 -2.39 -0.02 2.14 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.42 6.98 7.55 -92.71 -0.70 6.28 16 35 H 0.21 2.10 7.62 -2.91 -0.02 2.08 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 2.08 6.34 -2.39 -0.02 2.07 16 38 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -68.78 342.19 4.88 -63.90 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 0.42 Total: 4.26 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 6.53 Total: 29.85 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -6.37 Total: -117.09 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 2.33 Total: -7.02 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.78 4.88 -63.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690945417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.457 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds