Wall clock time and date at job start Tue Mar 31 2020 13:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36935 * 119.99931 * 2 1 4 4 H 1.07999 * 119.99831 * 204.82842 * 3 2 1 5 5 C 1.38808 * 120.00098 * 24.83232 * 3 2 1 6 6 N 1.31619 * 120.00013 * 5.92343 * 5 3 2 7 7 Si 1.86801 * 120.00098 * 185.92781 * 5 3 2 8 8 H 1.48492 * 109.47390 * 89.99854 * 7 5 3 9 9 H 1.48506 * 109.47123 * 209.99736 * 7 5 3 10 10 H 1.48495 * 109.46855 * 329.99282 * 7 5 3 11 11 C 1.46504 * 119.99903 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.46847 * 269.99939 * 11 2 1 13 13 N 1.46504 * 109.46847 * 179.97438 * 12 11 2 14 14 C 1.46499 * 120.00286 * 269.99732 * 13 12 11 15 15 C 1.34770 * 119.99876 * 90.00279 * 13 12 11 16 16 O 1.21629 * 120.00184 * 0.81342 * 15 13 12 17 17 C 1.47172 * 120.00039 * 181.08299 * 15 13 12 18 18 C 1.38402 * 126.88403 * 169.28488 * 17 15 13 19 19 C 1.39673 * 105.35977 * 180.02562 * 18 17 15 20 20 C 1.50698 * 126.06710 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47131 * 90.00463 * 20 19 18 22 22 F 1.39905 * 109.47089 * 209.99881 * 20 19 18 23 23 F 1.39901 * 109.47615 * 330.00076 * 20 19 18 24 24 N 1.30862 * 107.86048 * 0.02562 * 19 18 17 25 25 N 1.28447 * 110.92508 * 359.71061 * 24 19 18 26 26 H 0.97000 * 125.18825 * 180.28132 * 25 24 19 27 27 H 1.08996 * 109.46850 * 275.01985 * 1 2 3 28 28 H 1.08994 * 109.46943 * 35.02452 * 1 2 3 29 29 H 1.08998 * 109.46622 * 155.02184 * 1 2 3 30 30 H 0.96997 * 120.00432 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46954 * 150.00017 * 11 2 1 32 32 H 1.09004 * 109.47237 * 29.99856 * 11 2 1 33 33 H 1.09000 * 109.47280 * 60.00277 * 12 11 2 34 34 H 1.08997 * 109.47960 * 299.99838 * 12 11 2 35 35 H 1.08995 * 109.47919 * 263.36294 * 14 13 12 36 36 H 1.09007 * 109.46713 * 23.36279 * 14 13 12 37 37 H 1.09004 * 109.47391 * 143.35788 * 14 13 12 38 38 H 1.08007 * 127.31890 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1548 1.2291 -0.3927 5 6 1.5520 2.3324 0.5048 6 7 0.3748 2.2582 1.0890 7 14 2.4180 3.9808 0.3550 8 1 2.0217 4.6343 -0.9181 9 1 2.0329 4.8479 1.4974 10 1 3.8879 3.7704 0.3669 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1845 -2.9801 1.4411 14 6 2.4515 -4.2485 1.4408 15 6 4.5322 -2.9807 1.4410 16 8 5.1408 -1.9277 1.4563 17 6 5.2675 -4.2553 1.4163 18 6 6.6248 -4.4274 1.2070 19 6 6.8377 -5.8061 1.2751 20 6 8.1609 -6.5086 1.1116 21 9 8.7822 -6.6292 2.3592 22 9 7.9493 -7.7815 0.5710 23 9 8.9795 -5.7674 0.2527 24 7 5.6843 -6.3794 1.5062 25 7 4.7480 -5.5051 1.5999 26 1 3.8141 -5.7025 1.7723 27 1 -0.3633 0.0899 1.0237 28 1 -0.3633 0.8415 -0.5898 29 1 -0.3632 -0.9316 -0.4340 30 1 -0.0431 3.0595 1.4415 31 1 3.1500 -1.1382 -0.5143 32 1 1.6085 -2.0282 -0.5147 33 1 1.5001 -1.8416 1.9555 34 1 3.0416 -0.9517 1.9560 35 1 2.3727 -4.6230 2.4614 36 1 1.4528 -4.0909 1.0335 37 1 2.9835 -4.9755 0.8271 38 1 7.3623 -3.6589 1.0282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698999346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:27 Heat of formation + Delta-G solvation = -57.171493 kcal Electronic energy + Delta-G solvation = -26828.487139 eV Core-core repulsion = 22295.120709 eV Total energy + Delta-G solvation = -4533.366430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.38095 -47.91199 -47.87402 -43.27460 -39.63086 -36.35790 -35.28363 -33.09890 -31.81574 -31.17091 -28.88304 -27.32069 -26.68044 -25.92614 -24.46083 -22.54282 -21.86128 -21.05573 -20.30715 -18.78470 -18.66870 -18.34248 -17.64482 -16.85246 -16.40569 -16.14716 -15.87992 -15.24471 -14.77032 -14.68429 -14.62116 -14.30871 -14.20998 -14.02303 -13.99338 -13.94762 -13.64789 -13.40895 -13.21511 -12.80384 -12.62889 -12.54071 -12.03399 -11.63011 -11.45118 -10.91573 -10.89201 -10.56834 -10.26373 -10.22939 -10.11537 -10.00267 -9.84393 -9.65058 -8.84358 -8.54810 -6.80898 -5.77082 -3.25895 0.83477 1.59146 1.89954 2.46698 2.81187 3.02439 3.34656 3.38641 3.44699 3.47929 3.65257 4.05250 4.12122 4.45197 4.49394 4.51593 4.83682 4.85117 5.06060 5.19415 5.39640 5.53000 5.64229 5.72462 6.04849 6.10818 6.20565 6.37133 6.54858 6.65180 6.86002 7.13671 7.26809 7.32988 7.67257 7.80481 7.98635 8.36727 9.20317 9.80284 10.28441 11.27661 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.002681 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.448388 B =10440.759091 C =11223.205038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.598 5.598 3 C -0.255 4.255 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.911 5.911 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.143 3.857 12 C 0.092 3.908 13 N -0.604 5.604 14 C 0.053 3.947 15 C 0.580 3.420 16 O -0.500 6.500 17 C -0.015 4.015 18 C -0.113 4.113 19 C -0.071 4.071 20 C 0.562 3.438 21 F -0.169 7.169 22 F -0.169 7.169 23 F -0.165 7.165 24 N -0.221 5.221 25 N -0.363 5.363 26 H 0.455 0.545 27 H 0.030 0.970 28 H 0.047 0.953 29 H -0.006 1.006 30 H 0.253 0.747 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -20.264 1.444 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.321 5.321 3 C -0.385 4.385 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.556 5.556 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.202 1.202 11 C 0.014 3.986 12 C -0.032 4.032 13 N -0.338 5.338 14 C -0.091 4.091 15 C 0.364 3.636 16 O -0.372 6.372 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.229 4.229 20 C 0.506 3.494 21 F -0.151 7.151 22 F -0.150 7.150 23 F -0.146 7.146 24 N -0.058 5.058 25 N -0.091 5.091 26 H 0.311 0.689 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.013 0.987 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.770 -20.514 1.667 22.000 hybrid contribution 0.297 1.309 0.072 1.344 sum 8.067 -19.205 1.739 20.903 Atomic orbital electron populations 1.20867 0.82265 0.95495 0.99501 1.43942 1.01970 1.00503 1.85654 1.19275 0.99375 0.85748 1.34081 0.91166 1.25117 0.97325 0.98872 0.98059 1.70037 1.16177 1.27695 1.41703 0.86205 0.79357 0.83616 0.77145 1.21437 1.21631 1.20235 1.21137 0.96306 0.88399 0.92749 1.22872 0.95521 0.82155 1.02612 1.48044 1.04888 1.08395 1.72515 1.22179 0.99512 0.86190 1.01208 1.16913 0.82023 0.86246 0.78376 1.90929 1.67304 1.30463 1.48553 1.22068 0.94515 0.86868 1.10798 1.21925 0.94577 0.94785 1.02803 1.21649 0.93102 0.93479 1.14654 1.16712 0.82324 0.76166 0.74208 1.93247 1.84004 1.95830 1.41980 1.93232 1.94885 1.40818 1.86046 1.93239 1.74050 1.76813 1.70501 1.73017 0.96433 1.20433 1.15871 1.45083 1.10981 1.03103 1.49901 0.68871 0.95143 0.93458 0.98709 0.93692 0.93340 0.94584 0.90787 0.88996 0.91880 0.88398 0.91824 0.80271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 9.00 59.85 0.54 4.38 16 2 N -0.60 -14.63 2.92 -181.12 -0.53 -15.16 16 3 C -0.26 -7.00 9.67 -15.06 -0.15 -7.14 16 4 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 5 C 0.00 0.12 5.23 -17.43 -0.09 0.03 16 6 N -0.91 -25.98 10.46 55.49 0.58 -25.40 16 7 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.14 2.81 6.03 -4.04 -0.02 2.79 16 12 C 0.09 1.59 5.71 -4.04 -0.02 1.57 16 13 N -0.60 -8.02 2.87 -182.95 -0.53 -8.55 16 14 C 0.05 0.41 8.91 59.85 0.53 0.95 16 15 C 0.58 8.61 7.66 -12.64 -0.10 8.52 16 16 O -0.50 -9.61 16.51 5.25 0.09 -9.52 16 17 C -0.01 -0.18 6.73 -82.06 -0.55 -0.73 16 18 C -0.11 -1.32 10.49 -38.99 -0.41 -1.73 16 19 C -0.07 -0.79 6.56 -82.47 -0.54 -1.33 16 20 C 0.56 5.84 3.55 36.00 0.13 5.96 16 21 F -0.17 -1.78 17.30 2.25 0.04 -1.75 16 22 F -0.17 -1.79 17.26 2.25 0.04 -1.75 16 23 F -0.16 -1.68 17.04 2.25 0.04 -1.64 16 24 N -0.22 -2.39 12.08 33.64 0.41 -1.99 16 25 N -0.36 -3.39 5.95 33.48 0.20 -3.19 16 26 H 0.45 2.81 4.99 -190.45 -0.95 1.85 16 27 H 0.03 0.76 7.34 -51.93 -0.38 0.38 16 28 H 0.05 1.22 7.26 -51.93 -0.38 0.84 16 29 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.04 0.62 7.86 -51.93 -0.41 0.21 16 33 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.09 1.94 7.41 -51.93 -0.38 1.55 16 35 H 0.06 0.34 7.76 -51.93 -0.40 -0.06 16 36 H 0.10 0.69 8.02 -51.93 -0.42 0.28 16 37 H 0.06 0.39 5.20 -51.93 -0.27 0.12 16 38 H 0.18 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -32.21 336.79 -5.10 -37.31 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.80 Total: -3.65 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.68 Total: 13.26 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.13 Total: -54.29 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.12 Total: -5.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.21 -5.10 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698999346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.858 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds