Wall clock time and date at job start Tue Mar 31 2020 13:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36935 * 119.99931 * 2 1 4 4 H 1.07999 * 119.99831 * 204.82842 * 3 2 1 5 5 C 1.38808 * 120.00098 * 24.83232 * 3 2 1 6 6 N 1.31619 * 120.00013 * 5.92343 * 5 3 2 7 7 Si 1.86801 * 120.00098 * 185.92781 * 5 3 2 8 8 H 1.48492 * 109.47390 * 89.99854 * 7 5 3 9 9 H 1.48506 * 109.47123 * 209.99736 * 7 5 3 10 10 H 1.48495 * 109.46855 * 329.99282 * 7 5 3 11 11 C 1.46504 * 119.99903 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.46847 * 269.99939 * 11 2 1 13 13 N 1.46504 * 109.46847 * 179.97438 * 12 11 2 14 14 C 1.46499 * 120.00286 * 269.99732 * 13 12 11 15 15 C 1.34770 * 119.99876 * 90.00279 * 13 12 11 16 16 O 1.21629 * 120.00184 * 0.81342 * 15 13 12 17 17 C 1.47172 * 120.00039 * 181.08299 * 15 13 12 18 18 C 1.38402 * 126.88403 * 169.28488 * 17 15 13 19 19 C 1.39673 * 105.35977 * 180.02562 * 18 17 15 20 20 C 1.50698 * 126.06710 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47131 * 90.00463 * 20 19 18 22 22 F 1.39905 * 109.47089 * 209.99881 * 20 19 18 23 23 F 1.39901 * 109.47615 * 330.00076 * 20 19 18 24 24 N 1.30862 * 107.86048 * 0.02562 * 19 18 17 25 25 N 1.28447 * 110.92508 * 359.71061 * 24 19 18 26 26 H 0.97000 * 125.18825 * 180.28132 * 25 24 19 27 27 H 1.08996 * 109.46850 * 275.01985 * 1 2 3 28 28 H 1.08994 * 109.46943 * 35.02452 * 1 2 3 29 29 H 1.08998 * 109.46622 * 155.02184 * 1 2 3 30 30 H 0.96997 * 120.00432 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46954 * 150.00017 * 11 2 1 32 32 H 1.09004 * 109.47237 * 29.99856 * 11 2 1 33 33 H 1.09000 * 109.47280 * 60.00277 * 12 11 2 34 34 H 1.08997 * 109.47960 * 299.99838 * 12 11 2 35 35 H 1.08995 * 109.47919 * 263.36294 * 14 13 12 36 36 H 1.09007 * 109.46713 * 23.36279 * 14 13 12 37 37 H 1.09004 * 109.47391 * 143.35788 * 14 13 12 38 38 H 1.08007 * 127.31890 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1548 1.2291 -0.3927 5 6 1.5520 2.3324 0.5048 6 7 0.3748 2.2582 1.0890 7 14 2.4180 3.9808 0.3550 8 1 2.0217 4.6343 -0.9181 9 1 2.0329 4.8479 1.4974 10 1 3.8879 3.7704 0.3669 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1845 -2.9801 1.4411 14 6 2.4515 -4.2485 1.4408 15 6 4.5322 -2.9807 1.4410 16 8 5.1408 -1.9277 1.4563 17 6 5.2675 -4.2553 1.4163 18 6 6.6248 -4.4274 1.2070 19 6 6.8377 -5.8061 1.2751 20 6 8.1609 -6.5086 1.1116 21 9 8.7822 -6.6292 2.3592 22 9 7.9493 -7.7815 0.5710 23 9 8.9795 -5.7674 0.2527 24 7 5.6843 -6.3794 1.5062 25 7 4.7480 -5.5051 1.5999 26 1 3.8141 -5.7025 1.7723 27 1 -0.3633 0.0899 1.0237 28 1 -0.3633 0.8415 -0.5898 29 1 -0.3632 -0.9316 -0.4340 30 1 -0.0431 3.0595 1.4415 31 1 3.1500 -1.1382 -0.5143 32 1 1.6085 -2.0282 -0.5147 33 1 1.5001 -1.8416 1.9555 34 1 3.0416 -0.9517 1.9560 35 1 2.3727 -4.6230 2.4614 36 1 1.4528 -4.0909 1.0335 37 1 2.9835 -4.9755 0.8271 38 1 7.3623 -3.6589 1.0282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698999346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:26 Heat of formation + Delta-G solvation = -78.415707 kcal Electronic energy + Delta-G solvation = -26829.408357 eV Core-core repulsion = 22295.120709 eV Total energy + Delta-G solvation = -4534.287648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.20507 -48.73156 -48.70188 -44.16524 -40.82170 -37.89753 -36.75734 -34.14738 -33.38032 -32.42751 -30.27193 -28.32668 -27.92538 -27.51616 -25.92380 -23.81151 -22.74344 -22.43182 -21.64251 -19.60971 -19.51536 -19.31575 -18.81348 -18.52576 -17.44502 -17.39809 -16.89819 -16.81622 -16.06868 -15.60265 -15.54251 -15.49442 -15.23491 -15.13132 -15.05040 -14.85145 -14.84665 -14.80646 -14.33921 -14.19526 -13.97310 -13.59961 -13.19659 -13.13029 -12.82635 -12.75217 -12.54478 -12.42909 -12.07417 -12.03706 -11.60653 -11.37542 -11.06560 -10.68886 -10.61811 -9.96592 -8.77030 -7.86024 -5.36325 -0.13020 0.68667 1.08825 1.43588 1.45912 1.50152 1.55232 1.81116 1.97322 2.48373 2.50427 2.80024 3.12798 3.29320 3.29671 3.64435 3.73161 3.84449 3.95217 4.12459 4.18060 4.27557 4.52886 4.61067 4.65585 4.80875 4.86309 4.92702 5.09049 5.36075 5.36966 5.50962 5.63256 5.76494 6.11692 6.31948 6.32819 6.84315 7.15124 7.84380 8.24842 9.16105 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.002681 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.448388 B =10440.759091 C =11223.205038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.616 5.616 3 C -0.265 4.265 4 H 0.059 0.941 5 C -0.044 4.044 6 N -0.933 5.933 7 Si 0.963 3.037 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.276 1.276 11 C 0.146 3.854 12 C 0.111 3.889 13 N -0.600 5.600 14 C 0.041 3.959 15 C 0.580 3.420 16 O -0.556 6.556 17 C -0.021 4.021 18 C -0.115 4.115 19 C -0.078 4.078 20 C 0.567 3.433 21 F -0.170 7.170 22 F -0.169 7.169 23 F -0.164 7.164 24 N -0.216 5.216 25 N -0.338 5.338 26 H 0.469 0.531 27 H 0.011 0.989 28 H 0.016 0.984 29 H 0.036 0.964 30 H 0.250 0.750 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.781 -22.516 1.386 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.340 5.340 3 C -0.396 4.396 4 H 0.077 0.923 5 C -0.240 4.240 6 N -0.580 5.580 7 Si 0.792 3.208 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.202 1.202 11 C 0.018 3.982 12 C -0.013 4.013 13 N -0.332 5.332 14 C -0.101 4.101 15 C 0.366 3.634 16 O -0.432 6.432 17 C -0.148 4.148 18 C -0.144 4.144 19 C -0.235 4.235 20 C 0.511 3.489 21 F -0.151 7.151 22 F -0.150 7.150 23 F -0.145 7.145 24 N -0.053 5.053 25 N -0.069 5.069 26 H 0.329 0.671 27 H 0.029 0.971 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.466 -22.848 1.606 24.091 hybrid contribution 0.397 1.865 0.060 1.908 sum 7.862 -20.983 1.666 22.470 Atomic orbital electron populations 1.20641 0.81835 0.96270 0.98060 1.44111 1.02515 1.01252 1.86096 1.19431 0.99073 0.87451 1.33615 0.92306 1.25756 0.98124 1.01694 0.98408 1.70175 1.17113 1.28031 1.42655 0.85325 0.78316 0.80138 0.77043 1.20893 1.21644 1.20161 1.21183 0.95395 0.87375 0.94205 1.22214 0.95597 0.83213 1.00326 1.47924 1.04609 1.09058 1.71598 1.22599 0.99812 0.83740 1.03929 1.17211 0.82348 0.86483 0.77319 1.90905 1.68541 1.32609 1.51148 1.21517 0.94396 0.86530 1.12406 1.22076 0.94756 0.95297 1.02255 1.21689 0.93530 0.93187 1.15071 1.16590 0.82064 0.76059 0.74156 1.93248 1.83991 1.95828 1.42057 1.93232 1.94880 1.40821 1.86047 1.93243 1.74007 1.76804 1.70476 1.73017 0.96538 1.20367 1.15356 1.45091 1.11481 1.01814 1.48555 0.67110 0.97116 0.96517 0.94531 0.94112 0.95405 0.91156 0.89354 0.93415 0.88678 0.86825 0.89835 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.21 9.00 127.77 1.15 9.36 16 2 N -0.62 -30.17 2.92 -726.94 -2.13 -32.30 16 3 C -0.27 -14.83 9.67 84.03 0.81 -14.02 16 4 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 5 C -0.04 -2.49 5.23 84.86 0.44 -2.05 16 6 N -0.93 -54.11 10.46 21.65 0.23 -53.89 16 7 Si 0.96 45.91 29.56 68.60 2.03 47.93 16 8 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 C 0.15 5.62 6.03 86.38 0.52 6.14 16 12 C 0.11 3.79 5.71 86.38 0.49 4.29 16 13 N -0.60 -14.87 2.87 -850.97 -2.44 -17.31 16 14 C 0.04 0.48 8.91 127.77 1.14 1.61 16 15 C 0.58 16.87 7.66 86.59 0.66 17.53 16 16 O -0.56 -22.01 16.51 -4.12 -0.07 -22.08 16 17 C -0.02 -0.46 6.73 40.79 0.27 -0.18 16 18 C -0.12 -2.57 10.49 22.66 0.24 -2.33 16 19 C -0.08 -1.59 6.56 43.05 0.28 -1.31 16 20 C 0.57 10.89 3.55 71.24 0.25 11.15 16 21 F -0.17 -3.34 17.30 44.97 0.78 -2.56 16 22 F -0.17 -3.27 17.26 44.97 0.78 -2.50 16 23 F -0.16 -3.15 17.04 44.97 0.77 -2.38 16 24 N -0.22 -4.07 12.08 -47.50 -0.57 -4.64 16 25 N -0.34 -5.29 5.95 -48.00 -0.29 -5.58 16 26 H 0.47 3.90 4.99 -220.00 -1.10 2.80 16 27 H 0.01 0.53 7.34 -2.39 -0.02 0.51 16 28 H 0.02 0.84 7.26 -2.39 -0.02 0.82 16 29 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 30 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 32 H 0.07 2.22 7.86 -2.38 -0.02 2.20 16 33 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 34 H 0.05 2.07 7.41 -2.39 -0.02 2.05 16 35 H 0.10 0.58 7.76 -2.39 -0.02 0.56 16 36 H 0.11 1.07 8.02 -2.38 -0.02 1.05 16 37 H 0.08 0.66 5.20 -2.38 -0.01 0.65 16 38 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -71.83 336.79 5.37 -66.46 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: 0.03 Total: -1.35 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 6.27 Total: 30.18 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.20 Total: -113.71 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.07 Total: -22.08 kcal Atomic # 9 Polarization: -9.76 SS G_CDS: 2.32 Total: -7.44 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -71.83 5.37 -66.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698999346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.957 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds