Wall clock time and date at job start Tue Mar 31 2020 12:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.36937 * 120.00196 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00394 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47624 * 59.99868 * 10 8 6 12 12 H 1.48500 * 109.47270 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46796 * 300.00094 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 C 1.34769 * 119.99686 * 84.99974 * 14 2 1 16 16 O 1.21563 * 120.00432 * 0.02562 * 15 14 2 17 17 C 1.47712 * 119.99779 * 180.02562 * 15 14 2 18 18 C 1.41500 * 126.51820 * 179.71298 * 17 15 14 19 19 C 1.35376 * 105.50122 * 179.90276 * 18 17 15 20 20 C 1.50699 * 126.38169 * 180.08894 * 19 18 17 21 21 F 1.39899 * 109.47045 * 270.31726 * 20 19 18 22 22 F 1.39901 * 109.47674 * 30.32102 * 20 19 18 23 23 F 1.39905 * 109.46739 * 150.31937 * 20 19 18 24 24 N 1.35032 * 107.22582 * 0.35497 * 19 18 17 25 25 C 1.46504 * 124.87938 * 179.76209 * 24 19 18 26 26 N 1.28466 * 110.23518 * 359.76890 * 24 19 18 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 31 31 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 32 32 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 33 33 H 0.97000 * 120.00161 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99634 * 265.00306 * 14 2 1 35 35 H 1.08001 * 127.25315 * 0.02562 * 18 17 15 36 36 H 1.08997 * 109.47183 * 270.02461 * 25 24 19 37 37 H 1.08994 * 109.47164 * 30.02886 * 25 24 19 38 38 H 1.08999 * 109.47019 * 150.03043 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2074 7 1 3.6467 -1.8430 3.0522 8 6 5.5672 -1.5380 2.1515 9 7 6.2217 -1.0447 1.1217 10 14 6.4999 -2.3728 3.5381 11 1 6.0433 -3.7801 3.6650 12 1 7.9547 -2.3488 3.2409 13 1 6.2433 -1.6525 4.8112 14 7 2.0184 -0.6906 -1.1962 15 6 2.1472 -0.0183 -2.3570 16 8 1.8585 1.1613 -2.4116 17 6 2.6391 -0.7147 -3.5632 18 6 2.8209 -0.1485 -4.8472 19 6 3.2859 -1.1550 -5.6239 20 6 3.6409 -1.0651 -7.0858 21 9 2.5113 -1.3547 -7.8586 22 9 4.0875 0.2279 -7.3787 23 9 4.6537 -1.9854 -7.3770 24 7 3.3666 -2.2558 -4.8461 25 6 3.8219 -3.5718 -5.3014 26 7 2.9866 -1.9833 -3.6496 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7516 -0.1583 2.1369 31 1 1.6053 -1.7198 1.2952 32 1 3.9825 -0.4622 0.4320 33 1 7.1884 -1.1143 1.0829 34 1 2.2491 -1.6318 -1.1525 35 1 2.6309 0.8723 -5.1444 36 1 2.9694 -4.1455 -5.6648 37 1 4.5459 -3.4472 -6.1065 38 1 4.2892 -4.1017 -4.4713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699404236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:58 Heat of formation + Delta-G solvation = -89.109161 kcal Electronic energy + Delta-G solvation = -27060.019692 eV Core-core repulsion = 22525.268341 eV Total energy + Delta-G solvation = -4534.751351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -50.63040 -48.20152 -48.05633 -43.04561 -39.30860 -36.15779 -33.85676 -33.62037 -32.28667 -31.20712 -29.93203 -27.83766 -26.23743 -25.65792 -23.72847 -22.53958 -21.74872 -20.78698 -20.09670 -19.00370 -18.83684 -18.68431 -17.14958 -16.72607 -16.63850 -16.07444 -15.66353 -15.19498 -14.88813 -14.76557 -14.55234 -14.54369 -14.37484 -14.21714 -14.07451 -13.83464 -13.64745 -13.31320 -13.03318 -12.89584 -12.58846 -12.32855 -12.20296 -12.09417 -11.60363 -11.23789 -10.90386 -10.81594 -10.46983 -10.08221 -9.91641 -9.82289 -9.73357 -9.40416 -8.90933 -8.70137 -6.95227 -5.76749 -3.06765 1.17140 1.64503 1.77204 2.25579 3.11011 3.41657 3.43624 3.47587 3.48622 3.53251 3.57317 3.91735 4.09339 4.57546 4.72613 4.74742 4.92566 5.07974 5.13540 5.27554 5.36207 5.50702 5.55445 5.67297 5.96327 6.02770 6.10780 6.16490 6.21136 6.41408 6.47663 6.70008 6.92195 7.42225 7.68032 7.88551 8.40572 8.45701 9.52425 10.08768 10.44043 11.45412 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003425 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.125747 B = 8174.413053 C = 9459.615294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.090 0.910 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.694 5.694 15 C 0.605 3.395 16 O -0.536 6.536 17 C -0.008 4.008 18 C -0.104 4.104 19 C -0.103 4.103 20 C 0.552 3.448 21 F -0.168 7.168 22 F -0.158 7.158 23 F -0.174 7.174 24 N -0.250 5.250 25 C 0.062 3.938 26 N -0.213 5.213 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.411 0.589 35 H 0.177 0.823 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 -3.589 -18.148 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.108 0.892 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.375 4.375 7 H 0.088 0.912 8 C -0.207 4.207 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.344 5.344 15 C 0.388 3.612 16 O -0.412 6.412 17 C -0.167 4.167 18 C -0.133 4.133 19 C -0.227 4.227 20 C 0.496 3.504 21 F -0.149 7.149 22 F -0.140 7.140 23 F -0.155 7.155 24 N -0.040 5.040 25 C -0.077 4.077 26 N -0.050 5.050 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.246 0.754 35 H 0.194 0.806 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.514 -3.923 -17.453 19.811 hybrid contribution 1.005 -0.223 -0.179 1.045 sum -7.509 -4.147 -17.632 19.608 Atomic orbital electron populations 1.22108 0.95265 1.01986 1.02285 1.21335 0.93515 0.98107 0.84244 0.89192 1.20988 0.86905 0.97018 0.93460 1.42356 0.99712 1.70316 1.25286 1.19174 0.89431 1.29670 0.99189 0.91168 1.24745 0.96438 1.01531 0.98016 1.69663 1.07266 1.50720 1.30222 0.86270 0.78970 0.79248 0.81675 1.21289 1.21734 1.21243 1.45842 1.65122 1.14785 1.08652 1.16679 0.77512 0.85583 0.81390 1.90782 1.51231 1.14645 1.84539 1.22087 1.08124 0.90398 0.96058 1.21615 1.00553 1.00053 0.91073 1.21004 1.16984 0.91632 0.93123 1.16996 0.74518 0.74344 0.84510 1.93266 1.51376 1.93176 1.77094 1.93263 1.89222 1.37469 1.94006 1.93125 1.61457 1.66553 1.94351 1.45299 1.44388 1.09393 1.04944 1.22721 1.02292 0.79233 1.03470 1.73761 1.12910 1.17373 1.00991 0.91460 0.92318 0.92511 0.94688 0.95728 0.77962 0.93475 0.75357 0.80580 0.88908 0.87183 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 2 C 0.13 2.26 2.73 -67.93 -0.19 2.07 16 3 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 4 C 0.14 2.82 5.82 -4.04 -0.02 2.80 16 5 N -0.73 -18.35 5.43 -59.91 -0.33 -18.68 16 6 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 10 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 N -0.69 -11.91 4.51 -54.79 -0.25 -12.16 16 15 C 0.61 10.71 7.79 -12.39 -0.10 10.62 16 16 O -0.54 -10.57 16.59 5.31 0.09 -10.48 16 17 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 18 C -0.10 -1.41 10.41 -39.36 -0.41 -1.82 16 19 C -0.10 -1.22 6.37 -82.21 -0.52 -1.75 16 20 C 0.55 5.43 3.43 36.01 0.12 5.56 16 21 F -0.17 -1.60 17.30 2.25 0.04 -1.56 16 22 F -0.16 -1.64 17.04 2.25 0.04 -1.60 16 23 F -0.17 -1.55 14.47 2.25 0.03 -1.51 16 24 N -0.25 -3.01 3.70 -63.85 -0.24 -3.24 16 25 C 0.06 0.47 11.03 59.85 0.66 1.13 16 26 N -0.21 -3.15 11.67 33.42 0.39 -2.76 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.39 10.42 7.33 -40.82 -0.30 10.12 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.41 7.03 8.33 -40.82 -0.34 6.69 16 35 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.68 5.44 -51.93 -0.28 0.40 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -32.92 344.22 -4.52 -37.43 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.24 Total: 10.85 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -0.94 Total: 8.76 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 0.31 Total: -64.35 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.11 Total: -4.67 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.92 -4.52 -37.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699404236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.677 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds