Wall clock time and date at job start Tue Mar 31 2020 12:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.36937 * 120.00196 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00394 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47624 * 59.99868 * 10 8 6 12 12 H 1.48500 * 109.47270 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46796 * 300.00094 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 C 1.34769 * 119.99686 * 84.99974 * 14 2 1 16 16 O 1.21563 * 120.00432 * 0.02562 * 15 14 2 17 17 C 1.47712 * 119.99779 * 180.02562 * 15 14 2 18 18 C 1.41500 * 126.51820 * 179.71298 * 17 15 14 19 19 C 1.35376 * 105.50122 * 179.90276 * 18 17 15 20 20 C 1.50699 * 126.38169 * 180.08894 * 19 18 17 21 21 F 1.39899 * 109.47045 * 270.31726 * 20 19 18 22 22 F 1.39901 * 109.47674 * 30.32102 * 20 19 18 23 23 F 1.39905 * 109.46739 * 150.31937 * 20 19 18 24 24 N 1.35032 * 107.22582 * 0.35497 * 19 18 17 25 25 C 1.46504 * 124.87938 * 179.76209 * 24 19 18 26 26 N 1.28466 * 110.23518 * 359.76890 * 24 19 18 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 31 31 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 32 32 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 33 33 H 0.97000 * 120.00161 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99634 * 265.00306 * 14 2 1 35 35 H 1.08001 * 127.25315 * 0.02562 * 18 17 15 36 36 H 1.08997 * 109.47183 * 270.02461 * 25 24 19 37 37 H 1.08994 * 109.47164 * 30.02886 * 25 24 19 38 38 H 1.08999 * 109.47019 * 150.03043 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2074 7 1 3.6467 -1.8430 3.0522 8 6 5.5672 -1.5380 2.1515 9 7 6.2217 -1.0447 1.1217 10 14 6.4999 -2.3728 3.5381 11 1 6.0433 -3.7801 3.6650 12 1 7.9547 -2.3488 3.2409 13 1 6.2433 -1.6525 4.8112 14 7 2.0184 -0.6906 -1.1962 15 6 2.1472 -0.0183 -2.3570 16 8 1.8585 1.1613 -2.4116 17 6 2.6391 -0.7147 -3.5632 18 6 2.8209 -0.1485 -4.8472 19 6 3.2859 -1.1550 -5.6239 20 6 3.6409 -1.0651 -7.0858 21 9 2.5113 -1.3547 -7.8586 22 9 4.0875 0.2279 -7.3787 23 9 4.6537 -1.9854 -7.3770 24 7 3.3666 -2.2558 -4.8461 25 6 3.8219 -3.5718 -5.3014 26 7 2.9866 -1.9833 -3.6496 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7516 -0.1583 2.1369 31 1 1.6053 -1.7198 1.2952 32 1 3.9825 -0.4622 0.4320 33 1 7.1884 -1.1143 1.0829 34 1 2.2491 -1.6318 -1.1525 35 1 2.6309 0.8723 -5.1444 36 1 2.9694 -4.1455 -5.6648 37 1 4.5459 -3.4472 -6.1065 38 1 4.2892 -4.1017 -4.4713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699404236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:57 Heat of formation + Delta-G solvation = -112.364715 kcal Electronic energy + Delta-G solvation = -27061.028128 eV Core-core repulsion = 22525.268341 eV Total energy + Delta-G solvation = -4535.759788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.42214 -48.97668 -48.85341 -44.07327 -40.69750 -37.71717 -35.48311 -34.80139 -33.39444 -32.84402 -31.50892 -28.72591 -27.42963 -27.10296 -24.97812 -24.30568 -22.73077 -22.09103 -21.36803 -19.96255 -19.77973 -19.49569 -19.12311 -17.83281 -17.60003 -17.36670 -16.86370 -16.64201 -16.00770 -15.88957 -15.67381 -15.43594 -15.33234 -15.20944 -15.16253 -15.07969 -15.00214 -14.97270 -14.03490 -13.84386 -13.71082 -13.61902 -13.48313 -13.29445 -13.05933 -12.74168 -12.65104 -12.31025 -12.19674 -11.88973 -11.70572 -11.33550 -10.94341 -10.86642 -10.45214 -10.06700 -9.00927 -7.93322 -5.23376 0.16078 0.47498 0.89147 1.40085 1.48203 1.51291 1.57239 2.06046 2.22598 2.37144 2.56886 2.72273 3.07670 3.12286 3.40826 3.71673 3.87042 3.98923 4.05474 4.19374 4.21016 4.29949 4.32072 4.51831 4.54571 4.81133 4.86681 4.91292 4.95150 5.11656 5.25392 5.32090 5.50090 5.52730 6.26596 6.28758 6.57649 7.08657 7.33858 8.07751 8.31250 9.29645 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003425 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.125747 B = 8174.413053 C = 9459.615294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.138 3.862 3 H 0.067 0.933 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.246 4.246 7 H 0.081 0.919 8 C -0.074 4.074 9 N -0.970 5.970 10 Si 0.974 3.026 11 H -0.275 1.275 12 H -0.299 1.299 13 H -0.279 1.279 14 N -0.692 5.692 15 C 0.603 3.397 16 O -0.565 6.565 17 C -0.037 4.037 18 C -0.116 4.116 19 C -0.096 4.096 20 C 0.565 3.435 21 F -0.162 7.162 22 F -0.160 7.160 23 F -0.164 7.164 24 N -0.241 5.241 25 C 0.050 3.950 26 N -0.228 5.228 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.373 0.627 33 H 0.249 0.751 34 H 0.410 0.590 35 H 0.185 0.815 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 -4.990 -18.471 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.033 3.967 3 H 0.085 0.915 4 C 0.019 3.981 5 N -0.388 5.388 6 C -0.378 4.378 7 H 0.098 0.902 8 C -0.266 4.266 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.201 1.201 12 H -0.225 1.225 13 H -0.205 1.205 14 N -0.342 5.342 15 C 0.387 3.613 16 O -0.443 6.443 17 C -0.193 4.193 18 C -0.144 4.144 19 C -0.222 4.222 20 C 0.508 3.492 21 F -0.143 7.143 22 F -0.141 7.141 23 F -0.145 7.145 24 N -0.032 5.032 25 C -0.088 4.088 26 N -0.067 5.067 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.246 0.754 35 H 0.203 0.797 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.230 -5.349 -17.754 20.713 hybrid contribution 1.172 0.160 -0.128 1.189 sum -8.059 -5.189 -17.882 20.289 Atomic orbital electron populations 1.22015 0.92194 1.03209 1.03042 1.21256 0.95722 0.96379 0.83319 0.91467 1.21152 0.83979 0.98069 0.94946 1.42552 1.01910 1.70035 1.24318 1.19629 0.89926 1.28533 0.99661 0.90150 1.25568 0.97523 1.03000 1.00490 1.69839 1.06966 1.52819 1.32399 0.85203 0.76965 0.78642 0.78860 1.20100 1.22516 1.20485 1.45840 1.65049 1.14664 1.08659 1.16941 0.76986 0.85357 0.81986 1.90747 1.52619 1.15761 1.85135 1.21888 1.10101 0.91226 0.96130 1.21781 1.01077 1.01032 0.90557 1.21216 1.15798 0.91100 0.94050 1.16659 0.74747 0.74426 0.83332 1.93282 1.51210 1.93130 1.76726 1.93266 1.89249 1.37717 1.93882 1.93146 1.61053 1.66186 1.94163 1.45747 1.42631 1.10682 1.04128 1.23165 1.03912 0.77589 1.04115 1.73702 1.13557 1.17003 1.02448 0.89591 0.92656 0.91010 0.93816 0.94245 0.79524 0.94187 0.75370 0.79737 0.86176 0.85587 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.48 71.98 0.68 -3.11 16 2 C 0.14 4.68 2.73 44.99 0.12 4.80 16 3 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 4 C 0.15 5.56 5.82 86.38 0.50 6.06 16 5 N -0.75 -37.52 5.43 -343.45 -1.87 -39.39 16 6 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 7 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 9 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 10 Si 0.97 45.80 29.55 68.60 2.03 47.82 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 N -0.69 -24.13 4.51 -445.54 -2.01 -26.14 16 15 C 0.60 21.94 7.79 86.75 0.68 22.61 16 16 O -0.56 -22.98 16.59 -3.92 -0.06 -23.05 16 17 C -0.04 -1.19 7.13 42.46 0.30 -0.89 16 18 C -0.12 -3.14 10.41 22.41 0.23 -2.90 16 19 C -0.10 -2.17 6.37 41.41 0.26 -1.91 16 20 C 0.56 10.08 3.43 71.24 0.24 10.33 16 21 F -0.16 -2.76 17.30 44.97 0.78 -1.98 16 22 F -0.16 -3.08 17.04 44.97 0.77 -2.31 16 23 F -0.16 -2.54 14.47 44.97 0.65 -1.89 16 24 N -0.24 -5.51 3.70 -355.92 -1.32 -6.83 16 25 C 0.05 0.64 11.03 127.77 1.41 2.05 16 26 N -0.23 -6.71 11.67 -48.17 -0.56 -7.27 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.37 20.60 7.33 -92.71 -0.68 19.92 16 33 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.41 14.23 8.33 -92.71 -0.77 13.46 16 35 H 0.19 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.13 1.23 5.44 -2.39 -0.01 1.22 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -70.81 344.22 4.11 -66.69 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.32 Total: 33.26 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 5.74 Total: 20.62 kcal Atomic # 7 Polarization: -133.70 SS G_CDS: -5.47 Total: -139.17 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 2.19 Total: -6.18 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -70.81 4.11 -66.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699404236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.671 kcal (2) G-P(sol) polarization free energy of solvation -70.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds