Wall clock time and date at job start Tue Mar 31 2020 12:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46994 * 2 1 4 4 C 1.36934 * 119.99779 * 275.30736 * 3 2 1 5 5 H 1.08003 * 119.99971 * 37.57720 * 4 3 2 6 6 C 1.38814 * 119.99967 * 217.57708 * 4 3 2 7 7 N 1.31620 * 119.99866 * 21.43234 * 6 4 3 8 8 Si 1.86797 * 119.99835 * 201.43259 * 6 4 3 9 9 H 1.48499 * 109.47372 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47080 * 120.00127 * 8 6 4 11 11 H 1.48502 * 109.47240 * 240.00127 * 8 6 4 12 12 C 1.46495 * 120.00018 * 95.30838 * 3 2 1 13 13 C 1.53005 * 109.47103 * 269.99550 * 12 3 2 14 14 N 1.46495 * 109.47103 * 179.97438 * 13 12 3 15 15 C 1.34776 * 120.00138 * 180.02562 * 14 13 12 16 16 O 1.21622 * 119.99813 * 359.97438 * 15 14 13 17 17 C 1.47320 * 120.00219 * 180.02562 * 15 14 13 18 18 N 1.35766 * 126.23767 * 359.97438 * 17 15 14 19 19 C 1.30171 * 108.86723 * 179.97438 * 18 17 15 20 20 N 1.35846 * 109.00114 * 359.74179 * 19 18 17 21 21 H 0.97004 * 126.12741 * 180.29323 * 20 19 18 22 22 C 1.35372 * 107.73163 * 0.42480 * 20 19 18 23 23 C 1.50698 * 126.56091 * 179.84709 * 22 20 19 24 24 F 1.39894 * 109.47641 * 359.68539 * 23 22 20 25 25 F 1.39908 * 109.47051 * 239.68441 * 23 22 20 26 26 F 1.39904 * 109.47137 * 119.68959 * 23 22 20 27 27 H 1.08999 * 109.47222 * 300.00459 * 1 2 3 28 28 H 1.09010 * 109.47110 * 60.00282 * 1 2 3 29 29 H 1.09003 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47534 * 239.99976 * 2 1 3 31 31 H 1.09001 * 109.46858 * 119.99683 * 2 1 3 32 32 H 0.96998 * 119.99548 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46996 * 150.00378 * 12 3 2 34 34 H 1.08991 * 109.47497 * 30.00009 * 12 3 2 35 35 H 1.09005 * 109.46519 * 60.00535 * 13 12 3 36 36 H 1.08991 * 109.47319 * 300.00568 * 13 12 3 37 37 H 0.97005 * 120.00088 * 0.02562 * 14 13 12 38 38 H 1.07999 * 125.49407 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9277 -1.9628 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6491 8 14 3.0992 4.2796 -2.6584 9 1 1.7775 4.2134 -3.3322 10 1 3.2548 5.6023 -2.0016 11 1 4.1765 4.0964 -3.6640 12 6 2.3731 2.0328 1.2632 13 6 1.1424 2.7384 1.8364 14 7 1.4971 3.3894 3.1000 15 6 0.5644 4.0760 3.7894 16 8 -0.5715 4.1555 3.3622 17 6 0.9212 4.7311 5.0597 18 7 2.1436 4.7245 5.6505 19 6 2.0798 5.4064 6.7575 20 7 0.8159 5.8794 6.9134 21 1 0.4951 6.4220 7.6507 22 6 0.0837 5.4552 5.8567 23 6 -1.3757 5.7350 5.6056 24 9 -1.8882 6.5117 6.6502 25 9 -2.0769 4.5264 5.5356 26 9 -1.5168 6.4266 4.3976 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.0490 3.4028 -0.7835 33 1 3.1615 2.7643 1.0859 34 1 2.7254 1.2835 1.9721 35 1 0.3540 2.0069 2.0138 36 1 0.7902 3.4876 1.1276 37 1 2.4032 3.3262 3.4405 38 1 2.9005 5.5733 7.4394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753083378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:55 Heat of formation + Delta-G solvation = -106.920621 kcal Electronic energy + Delta-G solvation = -27453.428660 eV Core-core repulsion = 22917.904946 eV Total energy + Delta-G solvation = -4535.523714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -50.28106 -47.88645 -47.63367 -42.69886 -38.98201 -36.26106 -34.15680 -33.29522 -31.84359 -31.25934 -29.59693 -27.68203 -26.14736 -24.34889 -23.22420 -22.36866 -21.40552 -20.40977 -20.21920 -19.46834 -18.61205 -18.38249 -17.27130 -16.56592 -16.04154 -15.84579 -15.59210 -15.01826 -14.73348 -14.54873 -14.49089 -14.43397 -14.13397 -13.83588 -13.81960 -13.76500 -13.64299 -13.36451 -12.76143 -12.60982 -12.34460 -12.00633 -11.47893 -11.09011 -10.87247 -10.74795 -10.72245 -10.58807 -10.45192 -10.08875 -9.93277 -9.81659 -9.64450 -9.35940 -8.53143 -8.40059 -6.58629 -5.79501 -3.38311 0.83901 1.91046 2.07306 2.64461 3.35593 3.40615 3.46763 3.48436 3.50384 3.51938 3.90000 4.14006 4.22215 4.50378 4.58649 4.91419 5.20778 5.32652 5.58942 5.74125 6.04080 6.15686 6.21754 6.42852 6.45402 6.55557 6.56652 6.73395 6.87681 6.95932 7.05830 7.17518 7.21275 7.60131 7.84724 7.95413 8.50241 8.53923 9.18620 9.80642 10.38688 11.20520 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.003484 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.094319 B = 8035.135707 C = 8331.699745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.138 3.862 13 C 0.096 3.904 14 N -0.695 5.695 15 C 0.580 3.420 16 O -0.532 6.532 17 C 0.036 3.964 18 N -0.457 5.457 19 C 0.228 3.772 20 N -0.543 5.543 21 H 0.431 0.569 22 C -0.065 4.065 23 C 0.554 3.446 24 F -0.186 7.186 25 F -0.153 7.153 26 F -0.152 7.152 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.254 0.746 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.407 0.593 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 6.345 19.599 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.345 5.345 15 C 0.363 3.637 16 O -0.409 6.409 17 C -0.098 4.098 18 N -0.176 5.176 19 C -0.057 4.057 20 N -0.146 5.146 21 H 0.272 0.728 22 C -0.186 4.186 23 C 0.498 3.502 24 F -0.168 7.168 25 F -0.134 7.134 26 F -0.133 7.133 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.242 0.758 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.382 6.011 18.838 20.493 hybrid contribution -0.555 1.577 0.385 1.716 sum -5.937 7.588 19.224 21.503 Atomic orbital electron populations 1.22393 0.99907 0.99061 1.01437 1.20880 0.91768 0.86974 0.98886 1.43620 1.76043 1.08287 1.02077 1.19061 1.04765 1.21251 0.93959 0.92030 1.25179 0.94169 1.01190 0.98094 1.70003 1.03173 1.37236 1.42438 0.86351 0.77753 0.82250 0.81202 1.19958 1.21389 1.21622 1.21055 0.94495 0.97034 0.86414 1.22567 1.01326 0.96639 0.82308 1.45920 1.13277 1.51412 1.23865 1.16890 0.85517 0.79325 0.81953 1.90861 1.19751 1.61505 1.68774 1.20919 0.89514 1.01690 0.97682 1.70868 1.21076 1.19008 1.06644 1.25559 0.86543 0.96232 0.97409 1.42906 1.10463 1.41389 1.19837 0.72845 1.20730 0.93464 1.09410 0.94990 1.16830 0.83770 0.74986 0.74613 1.93170 1.88922 1.76030 1.58680 1.93294 1.79832 1.44358 1.95909 1.93305 1.95989 1.79108 1.44894 0.93617 0.93101 0.94488 0.93599 0.94712 0.93564 0.88314 0.95160 0.92639 0.91399 0.75848 0.75392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.21 37.16 0.38 -2.79 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.27 2.43 -173.24 -0.42 -14.69 16 4 C -0.26 -7.07 9.45 -15.06 -0.14 -7.22 16 5 H 0.06 1.69 7.92 -52.48 -0.42 1.27 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -25.00 11.47 55.49 0.64 -24.36 16 8 Si 0.90 21.64 29.60 -169.99 -5.03 16.61 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 C 0.14 3.13 5.45 -4.04 -0.02 3.11 16 13 C 0.10 2.02 6.00 -4.04 -0.02 1.99 16 14 N -0.70 -12.71 5.55 -61.42 -0.34 -13.05 16 15 C 0.58 10.63 7.81 -12.57 -0.10 10.53 16 16 O -0.53 -11.09 13.92 5.26 0.07 -11.02 16 17 C 0.04 0.53 6.98 -83.09 -0.58 -0.05 16 18 N -0.46 -5.67 11.01 -11.03 -0.12 -5.79 16 19 C 0.23 1.68 13.04 -89.91 -1.17 0.51 16 20 N -0.54 -3.97 5.97 -10.12 -0.06 -4.03 16 21 H 0.43 1.49 8.77 -40.82 -0.36 1.13 16 22 C -0.07 -0.80 6.50 -81.69 -0.53 -1.33 16 23 C 0.55 7.24 2.81 36.00 0.10 7.34 16 24 F -0.19 -1.92 17.03 2.25 0.04 -1.89 16 25 F -0.15 -2.28 16.18 2.25 0.04 -2.24 16 26 F -0.15 -2.33 16.18 2.25 0.04 -2.29 16 27 H 0.04 0.87 6.64 -51.93 -0.34 0.52 16 28 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.03 0.68 7.83 -51.93 -0.41 0.28 16 32 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.10 2.53 5.52 -51.93 -0.29 2.24 16 34 H 0.03 0.64 7.86 -51.93 -0.41 0.24 16 35 H 0.06 1.17 6.64 -51.93 -0.34 0.82 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.41 6.81 8.19 -40.82 -0.33 6.48 16 38 H 0.23 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -33.19 338.54 -6.40 -39.59 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.14 Total: 2.70 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: -2.20 Total: 15.35 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.31 Total: -61.92 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.19 -6.40 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753083378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.327 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds