Wall clock time and date at job start Tue Mar 31 2020 12:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46692 * 2 1 4 4 C 1.36931 * 120.00308 * 275.30453 * 3 2 1 5 5 H 1.08008 * 119.99752 * 37.58281 * 4 3 2 6 6 C 1.38806 * 120.00312 * 217.58568 * 4 3 2 7 7 N 1.31622 * 120.00160 * 21.41936 * 6 4 3 8 8 Si 1.86804 * 120.00091 * 201.42338 * 6 4 3 9 9 H 1.48498 * 109.46903 * 59.99853 * 8 6 4 10 10 H 1.48504 * 109.47024 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47183 * 299.99612 * 8 6 4 12 12 C 1.46498 * 119.99737 * 95.30896 * 3 2 1 13 13 C 1.52996 * 109.47599 * 269.99670 * 12 3 2 14 14 N 1.46498 * 109.47599 * 180.02562 * 13 12 3 15 15 C 1.34779 * 119.99686 * 179.97438 * 14 13 12 16 16 O 1.21624 * 120.00641 * 0.02562 * 15 14 13 17 17 C 1.47167 * 119.99561 * 179.97438 * 15 14 13 18 18 C 1.38404 * 126.88214 * 180.02562 * 17 15 14 19 19 C 1.39672 * 105.35663 * 180.02562 * 18 17 15 20 20 C 1.50705 * 126.06860 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47251 * 89.99504 * 20 19 18 22 22 F 1.39900 * 109.47145 * 209.99582 * 20 19 18 23 23 F 1.39903 * 109.46861 * 329.99830 * 20 19 18 24 24 N 1.30861 * 107.86333 * 359.97438 * 19 18 17 25 25 N 1.28440 * 110.93020 * 359.71694 * 24 19 18 26 26 H 0.96995 * 125.19490 * 180.27193 * 25 24 19 27 27 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47825 * 299.99970 * 1 2 3 29 29 H 1.09006 * 109.47387 * 60.00040 * 1 2 3 30 30 H 1.08992 * 109.47460 * 240.00310 * 2 1 3 31 31 H 1.09000 * 109.47031 * 119.99698 * 2 1 3 32 32 H 0.96995 * 120.00027 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47263 * 149.99350 * 12 3 2 34 34 H 1.09007 * 109.47591 * 29.99736 * 12 3 2 35 35 H 1.09005 * 109.47074 * 59.99564 * 13 12 3 36 36 H 1.09007 * 109.46703 * 300.00610 * 13 12 3 37 37 H 0.96991 * 119.99898 * 0.02562 * 14 13 12 38 38 H 1.07995 * 127.32102 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1807 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3727 7 7 4.3026 2.7982 -0.6489 8 14 3.0993 4.2795 -2.6585 9 1 1.9627 5.1785 -2.3344 10 1 4.3618 5.0615 -2.6660 11 1 2.8845 3.6726 -3.9966 12 6 2.3730 2.0327 1.2633 13 6 1.1424 2.7383 1.8366 14 7 1.4973 3.3902 3.0996 15 6 0.5649 4.0778 3.7883 16 8 -0.5713 4.1566 3.3616 17 6 0.9213 4.7322 5.0574 18 6 0.0833 5.4691 5.8760 19 6 0.8792 5.8773 6.9487 20 6 0.4294 6.7119 8.1202 21 9 -0.0333 5.8732 9.1400 22 9 1.5055 7.4707 8.5927 23 9 -0.6018 7.5663 7.7154 24 7 2.0848 5.4064 6.7560 25 7 2.1441 4.7289 5.6664 26 1 2.9368 4.2855 5.3263 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.0487 3.4032 -0.7828 33 1 3.1615 2.7642 1.0861 34 1 2.7253 1.2834 1.9722 35 1 0.3539 2.0068 2.0138 36 1 0.7901 3.4876 1.1277 37 1 2.4035 3.3277 3.4397 38 1 -0.9634 5.6836 5.7184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753091897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:51 Heat of formation + Delta-G solvation = -94.204321 kcal Electronic energy + Delta-G solvation = -26479.721542 eV Core-core repulsion = 21944.749248 eV Total energy + Delta-G solvation = -4534.972294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.38069 -47.91453 -47.87044 -43.16469 -39.36392 -36.48452 -34.53066 -32.96487 -32.00089 -31.55196 -29.73226 -27.77405 -26.89533 -24.69787 -23.64715 -21.96807 -21.73597 -20.93493 -20.45476 -19.24544 -18.78338 -18.51726 -17.78692 -16.77147 -16.24636 -15.85547 -15.76036 -15.23862 -14.81590 -14.68838 -14.66962 -14.30484 -14.14691 -14.02091 -14.00411 -13.96001 -13.94321 -13.65419 -12.86906 -12.69706 -12.49788 -12.22788 -11.68595 -11.59423 -11.22968 -10.85036 -10.80071 -10.64100 -10.31618 -10.24264 -10.14721 -10.06474 -9.83721 -9.66322 -8.87176 -8.61004 -6.75619 -5.96188 -3.54813 0.83998 1.59820 1.88887 2.51937 3.00992 3.06922 3.28915 3.34391 3.36196 3.38391 3.67266 4.12237 4.34089 4.40255 4.53722 4.92079 5.06408 5.15390 5.39141 5.70713 5.83215 5.89914 6.00384 6.23112 6.26627 6.28933 6.35105 6.49754 6.57301 6.81373 6.81668 7.05628 7.15799 7.33672 7.49673 7.69461 8.07299 8.35790 9.02016 9.63651 10.21264 11.04287 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.002709 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.132581 B =10335.231657 C =10966.507622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.578 5.578 4 C -0.263 4.263 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.137 3.863 13 C 0.095 3.905 14 N -0.711 5.711 15 C 0.582 3.418 16 O -0.517 6.517 17 C -0.016 4.016 18 C -0.113 4.113 19 C -0.072 4.072 20 C 0.563 3.437 21 F -0.169 7.169 22 F -0.168 7.168 23 F -0.165 7.165 24 N -0.213 5.213 25 N -0.353 5.353 26 H 0.455 0.545 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.393 0.607 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 3.883 16.003 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.299 5.299 4 C -0.393 4.393 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.205 1.205 12 C 0.009 3.991 13 C -0.030 4.030 14 N -0.362 5.362 15 C 0.364 3.636 16 O -0.391 6.391 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.231 4.231 20 C 0.507 3.493 21 F -0.151 7.151 22 F -0.149 7.149 23 F -0.146 7.146 24 N -0.050 5.050 25 N -0.073 5.073 26 H 0.303 0.697 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.226 0.774 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.744 3.959 16.081 16.979 hybrid contribution 0.038 0.661 -0.823 1.056 sum -3.705 4.620 15.258 16.367 Atomic orbital electron populations 1.22388 0.99791 0.99215 1.01412 1.20899 0.91819 0.86836 0.99009 1.43594 1.76015 1.08305 1.01957 1.18997 1.04908 1.21394 0.93976 0.91980 1.25190 0.94085 1.01179 0.98146 1.69979 1.03133 1.37323 1.42567 0.86454 0.77028 0.82196 0.81668 1.20716 1.21544 1.20502 1.21068 0.94366 0.97019 0.86669 1.22688 1.01706 0.96785 0.81798 1.46084 1.12347 1.52691 1.25036 1.16879 0.85828 0.79142 0.81724 1.90869 1.19599 1.60605 1.68039 1.22125 0.86619 1.07049 0.98623 1.21895 1.01479 0.98914 0.91889 1.21650 0.93010 1.08830 0.99568 1.16692 0.75035 0.77326 0.80285 1.93247 1.89006 1.71372 1.61439 1.93236 1.55404 1.76910 1.89363 1.93236 1.59565 1.71333 1.90503 1.73041 1.20830 1.07753 1.03367 1.43785 1.11453 1.37182 1.14889 0.69723 0.94347 0.93694 0.93028 0.93442 0.94700 0.93405 0.88331 0.95187 0.92283 0.91052 0.77439 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.14 2.75 6.44 -4.04 -0.03 2.73 16 3 N -0.58 -13.14 2.43 -173.24 -0.42 -13.56 16 4 C -0.26 -6.71 9.45 -15.06 -0.14 -6.86 16 5 H 0.06 1.60 7.92 -52.48 -0.42 1.19 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -23.51 11.47 55.49 0.64 -22.87 16 8 Si 0.90 20.54 29.60 -169.99 -5.03 15.51 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.14 2.75 5.45 -4.04 -0.02 2.73 16 13 C 0.09 1.71 6.00 -4.04 -0.02 1.68 16 14 N -0.71 -10.02 5.55 -61.47 -0.34 -10.36 16 15 C 0.58 8.56 7.80 -12.63 -0.10 8.46 16 16 O -0.52 -9.53 16.92 5.26 0.09 -9.44 16 17 C -0.02 -0.19 7.16 -82.06 -0.59 -0.78 16 18 C -0.11 -1.32 10.48 -38.99 -0.41 -1.72 16 19 C -0.07 -0.82 6.56 -82.47 -0.54 -1.36 16 20 C 0.56 5.91 3.55 36.01 0.13 6.04 16 21 F -0.17 -1.78 17.30 2.25 0.04 -1.74 16 22 F -0.17 -1.84 17.26 2.25 0.04 -1.80 16 23 F -0.17 -1.68 17.04 2.25 0.04 -1.64 16 24 N -0.21 -2.39 12.08 33.64 0.41 -1.99 16 25 N -0.35 -3.41 6.85 33.48 0.23 -3.18 16 26 H 0.46 2.89 8.22 -190.46 -1.57 1.33 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.77 6.64 -51.93 -0.34 0.43 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 32 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.10 2.24 5.52 -51.93 -0.29 1.95 16 34 H 0.03 0.55 7.86 -51.93 -0.41 0.15 16 35 H 0.06 1.09 6.64 -51.93 -0.34 0.74 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.39 4.27 7.66 -40.82 -0.31 3.95 16 38 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -29.72 343.04 -5.91 -35.63 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.33 Total: 1.63 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.43 Total: 8.66 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.51 Total: -51.97 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.12 Total: -5.19 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.72 -5.91 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753091897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.574 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds