Wall clock time and date at job start Tue Mar 31 2020 12:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46692 * 2 1 4 4 C 1.36931 * 120.00308 * 275.30453 * 3 2 1 5 5 H 1.08008 * 119.99752 * 37.58281 * 4 3 2 6 6 C 1.38806 * 120.00312 * 217.58568 * 4 3 2 7 7 N 1.31622 * 120.00160 * 21.41936 * 6 4 3 8 8 Si 1.86804 * 120.00091 * 201.42338 * 6 4 3 9 9 H 1.48498 * 109.46903 * 59.99853 * 8 6 4 10 10 H 1.48504 * 109.47024 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47183 * 299.99612 * 8 6 4 12 12 C 1.46498 * 119.99737 * 95.30896 * 3 2 1 13 13 C 1.52996 * 109.47599 * 269.99670 * 12 3 2 14 14 N 1.46498 * 109.47599 * 180.02562 * 13 12 3 15 15 C 1.34779 * 119.99686 * 179.97438 * 14 13 12 16 16 O 1.21624 * 120.00641 * 0.02562 * 15 14 13 17 17 C 1.47167 * 119.99561 * 179.97438 * 15 14 13 18 18 C 1.38404 * 126.88214 * 180.02562 * 17 15 14 19 19 C 1.39672 * 105.35663 * 180.02562 * 18 17 15 20 20 C 1.50705 * 126.06860 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47251 * 89.99504 * 20 19 18 22 22 F 1.39900 * 109.47145 * 209.99582 * 20 19 18 23 23 F 1.39903 * 109.46861 * 329.99830 * 20 19 18 24 24 N 1.30861 * 107.86333 * 359.97438 * 19 18 17 25 25 N 1.28440 * 110.93020 * 359.71694 * 24 19 18 26 26 H 0.96995 * 125.19490 * 180.27193 * 25 24 19 27 27 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47825 * 299.99970 * 1 2 3 29 29 H 1.09006 * 109.47387 * 60.00040 * 1 2 3 30 30 H 1.08992 * 109.47460 * 240.00310 * 2 1 3 31 31 H 1.09000 * 109.47031 * 119.99698 * 2 1 3 32 32 H 0.96995 * 120.00027 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47263 * 149.99350 * 12 3 2 34 34 H 1.09007 * 109.47591 * 29.99736 * 12 3 2 35 35 H 1.09005 * 109.47074 * 59.99564 * 13 12 3 36 36 H 1.09007 * 109.46703 * 300.00610 * 13 12 3 37 37 H 0.96991 * 119.99898 * 0.02562 * 14 13 12 38 38 H 1.07995 * 127.32102 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1807 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3727 7 7 4.3026 2.7982 -0.6489 8 14 3.0993 4.2795 -2.6585 9 1 1.9627 5.1785 -2.3344 10 1 4.3618 5.0615 -2.6660 11 1 2.8845 3.6726 -3.9966 12 6 2.3730 2.0327 1.2633 13 6 1.1424 2.7383 1.8366 14 7 1.4973 3.3902 3.0996 15 6 0.5649 4.0778 3.7883 16 8 -0.5713 4.1566 3.3616 17 6 0.9213 4.7322 5.0574 18 6 0.0833 5.4691 5.8760 19 6 0.8792 5.8773 6.9487 20 6 0.4294 6.7119 8.1202 21 9 -0.0333 5.8732 9.1400 22 9 1.5055 7.4707 8.5927 23 9 -0.6018 7.5663 7.7154 24 7 2.0848 5.4064 6.7560 25 7 2.1441 4.7289 5.6664 26 1 2.9368 4.2855 5.3263 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.0487 3.4032 -0.7828 33 1 3.1615 2.7642 1.0861 34 1 2.7253 1.2834 1.9722 35 1 0.3539 2.0068 2.0138 36 1 0.7901 3.4876 1.1277 37 1 2.4035 3.3277 3.4397 38 1 -0.9634 5.6836 5.7184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753091897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:49 Heat of formation + Delta-G solvation = -113.686718 kcal Electronic energy + Delta-G solvation = -26480.566362 eV Core-core repulsion = 21944.749248 eV Total energy + Delta-G solvation = -4535.817114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.21199 -48.73693 -48.70982 -44.07169 -40.63351 -38.12825 -35.90823 -33.91452 -33.80945 -32.58371 -31.21586 -29.36159 -27.76861 -26.35413 -24.93010 -23.27474 -22.68729 -22.19104 -21.92449 -20.38652 -19.61433 -19.41495 -18.64266 -18.52352 -17.27630 -17.14147 -17.01202 -16.76164 -16.23389 -15.65375 -15.56715 -15.51399 -15.46954 -15.13563 -15.05792 -14.98227 -14.85247 -14.80974 -14.40633 -14.10344 -13.81532 -13.58277 -13.24615 -13.01956 -12.61884 -12.57932 -12.40730 -12.31132 -12.04334 -11.71348 -11.59233 -11.36672 -11.10947 -10.65937 -10.55012 -10.16986 -8.60321 -7.87505 -5.49568 -0.14144 0.68860 1.06844 1.44639 1.48734 1.54005 1.59472 1.90554 1.93760 2.48184 2.50581 2.80670 3.20229 3.29154 3.38207 3.64256 3.77026 3.97724 4.14542 4.30810 4.39073 4.48006 4.72991 4.82095 4.82290 4.85753 5.10099 5.11591 5.26173 5.30724 5.48988 5.57651 5.65087 5.73387 6.23851 6.36986 6.45724 6.90279 7.15101 7.82073 8.33557 9.08201 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.002709 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.132581 B =10335.231657 C =10966.507622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.596 5.596 4 C -0.271 4.271 5 H 0.052 0.948 6 C -0.025 4.025 7 N -0.909 5.909 8 Si 0.948 3.052 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.142 3.858 13 C 0.117 3.883 14 N -0.701 5.701 15 C 0.589 3.411 16 O -0.556 6.556 17 C -0.023 4.023 18 C -0.111 4.111 19 C -0.080 4.080 20 C 0.569 3.431 21 F -0.169 7.169 22 F -0.170 7.170 23 F -0.163 7.163 24 N -0.213 5.213 25 N -0.333 5.333 26 H 0.469 0.531 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.410 0.590 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 3.766 17.124 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.401 4.401 5 H 0.069 0.931 6 C -0.223 4.223 7 N -0.552 5.552 8 Si 0.776 3.224 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.015 3.985 13 C -0.009 4.009 14 N -0.353 5.353 15 C 0.374 3.626 16 O -0.433 6.433 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.237 4.237 20 C 0.512 3.488 21 F -0.150 7.150 22 F -0.151 7.151 23 F -0.144 7.144 24 N -0.051 5.051 25 N -0.056 5.056 26 H 0.320 0.680 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.246 0.754 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.723 3.826 17.224 18.032 hybrid contribution 0.038 0.656 -1.121 1.299 sum -3.685 4.482 16.103 17.116 Atomic orbital electron populations 1.22222 0.97914 1.00865 1.00519 1.21021 0.93193 0.85388 0.99324 1.43834 1.76365 1.09604 1.01971 1.19119 1.04418 1.21744 0.94841 0.93079 1.25699 0.94017 1.02716 0.99898 1.70061 1.03440 1.37893 1.43794 0.85661 0.76546 0.80103 0.80051 1.21129 1.21548 1.20260 1.20963 0.94293 0.96941 0.86295 1.22124 1.00489 0.95722 0.82570 1.45802 1.13365 1.52307 1.23790 1.17036 0.85063 0.78411 0.82128 1.90853 1.21246 1.61994 1.69242 1.21597 0.87754 1.07951 0.97869 1.22088 1.02003 0.98183 0.91633 1.21731 0.92955 1.09200 0.99839 1.16563 0.74969 0.77191 0.80040 1.93249 1.88985 1.71377 1.61399 1.93232 1.55574 1.76955 1.89370 1.93243 1.59441 1.71252 1.90474 1.73040 1.20820 1.07652 1.03541 1.43796 1.11328 1.36356 1.14090 0.68000 0.91391 0.93717 0.94716 0.94645 0.92812 0.93676 0.90672 0.93250 0.92329 0.94332 0.75365 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 10.21 71.98 0.73 -4.44 16 2 C 0.14 5.18 6.44 86.38 0.56 5.74 16 3 N -0.60 -26.94 2.43 -702.01 -1.71 -28.65 16 4 C -0.27 -13.91 9.45 84.03 0.79 -13.12 16 5 H 0.05 2.68 7.92 -2.91 -0.02 2.66 16 6 C -0.02 -1.29 4.95 84.86 0.42 -0.87 16 7 N -0.91 -48.20 11.47 21.65 0.25 -47.95 16 8 Si 0.95 42.45 29.60 68.60 2.03 44.48 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.14 5.64 5.45 86.38 0.47 6.11 16 13 C 0.12 4.16 6.00 86.38 0.52 4.68 16 14 N -0.70 -18.96 5.55 -466.62 -2.59 -21.55 16 15 C 0.59 16.73 7.80 86.59 0.68 17.40 16 16 O -0.56 -20.33 16.92 -4.11 -0.07 -20.40 16 17 C -0.02 -0.52 7.16 40.79 0.29 -0.23 16 18 C -0.11 -2.39 10.48 22.66 0.24 -2.15 16 19 C -0.08 -1.67 6.56 43.05 0.28 -1.39 16 20 C 0.57 11.02 3.55 71.24 0.25 11.28 16 21 F -0.17 -3.29 17.30 44.97 0.78 -2.51 16 22 F -0.17 -3.46 17.26 44.97 0.78 -2.68 16 23 F -0.16 -3.08 17.04 44.97 0.77 -2.31 16 24 N -0.21 -4.32 12.08 -47.49 -0.57 -4.90 16 25 N -0.33 -5.72 6.85 -47.99 -0.33 -6.04 16 26 H 0.47 4.82 8.22 -220.01 -1.81 3.01 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.47 6.64 -2.39 -0.02 1.46 16 29 H 0.03 1.24 8.14 -2.38 -0.02 1.23 16 30 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.05 1.83 7.83 -2.39 -0.02 1.81 16 32 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 33 H 0.08 3.41 5.52 -2.38 -0.01 3.39 16 34 H 0.05 1.74 7.86 -2.38 -0.02 1.72 16 35 H 0.06 2.11 6.64 -2.38 -0.02 2.09 16 36 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.41 8.19 7.66 -92.72 -0.71 7.48 16 38 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -62.83 343.04 3.19 -59.64 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -1.38 Total: 9.86 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 5.23 Total: 23.01 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.95 Total: -109.09 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 2.32 Total: -7.51 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -62.83 3.19 -59.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753091897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.044 kcal (2) G-P(sol) polarization free energy of solvation -62.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds