Wall clock time and date at job start Tue Mar 31 2020 12:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46889 * 2 1 4 4 C 1.53000 * 109.47078 * 240.00311 * 2 1 3 5 5 N 1.46502 * 109.47131 * 64.99921 * 4 2 1 6 6 C 1.36933 * 119.99832 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99911 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00243 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46901 * 89.99808 * 10 8 6 12 12 H 1.48496 * 109.47147 * 209.99919 * 10 8 6 13 13 H 1.48497 * 109.47280 * 330.00181 * 10 8 6 14 14 C 1.53003 * 109.46980 * 120.00131 * 2 1 3 15 15 N 1.46498 * 109.47232 * 295.00117 * 14 2 1 16 16 C 1.34769 * 120.00041 * 180.02562 * 15 14 2 17 17 O 1.21592 * 120.00057 * 359.97438 * 16 15 14 18 18 C 1.47580 * 120.00234 * 180.02562 * 16 15 14 19 19 C 1.39403 * 120.16655 * 359.96895 * 18 16 15 20 20 C 1.38475 * 120.48617 * 180.02562 * 19 18 16 21 21 F 1.35095 * 119.78498 * 180.27992 * 20 19 18 22 22 C 1.38185 * 120.42112 * 0.02562 * 20 19 18 23 23 C 1.39362 * 119.91752 * 359.97438 * 22 20 19 24 24 C 1.46852 * 134.26466 * 180.02562 * 23 22 20 25 25 C 1.33967 * 106.15188 * 180.02562 * 24 23 22 26 26 O 1.34460 * 110.12836 * 359.97438 * 25 24 23 27 27 C 1.34625 * 110.92363 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47147 * 299.99400 * 1 2 3 30 30 H 1.09003 * 109.47205 * 59.99844 * 1 2 3 31 31 H 1.09000 * 109.46728 * 184.99645 * 4 2 1 32 32 H 1.08998 * 109.47264 * 304.99459 * 4 2 1 33 33 H 0.97000 * 120.00166 * 0.02562 * 5 4 2 34 34 H 0.96994 * 120.00340 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46777 * 175.00317 * 14 2 1 36 36 H 1.08998 * 109.46745 * 55.00161 * 14 2 1 37 37 H 0.97002 * 120.00212 * 0.02562 * 15 14 2 38 38 H 1.07996 * 119.75624 * 0.04912 * 19 18 16 39 39 H 1.08001 * 120.03581 * 180.02562 * 22 20 19 40 40 H 1.07999 * 126.91907 * 359.97438 * 24 23 22 41 41 H 1.08003 * 124.93440 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0019 -0.4201 -3.6855 7 1 2.5637 -1.3370 -3.7864 8 6 1.6351 0.2972 -4.8160 9 7 0.9510 1.4148 -4.6931 10 14 2.1126 -0.3239 -6.5118 11 1 1.0430 -1.2128 -7.0326 12 1 2.2882 0.8297 -7.4301 13 1 3.3859 -1.0825 -6.4208 14 6 2.0400 -0.7213 1.2493 15 7 1.6524 0.0352 2.4424 16 6 1.9964 -0.4132 3.6659 17 8 2.6280 -1.4460 3.7794 18 6 1.6054 0.3486 4.8679 19 6 0.8809 1.5328 4.7418 20 6 0.5111 2.2532 5.8651 21 9 -0.1958 3.3961 5.7268 22 6 0.8561 1.8077 7.1269 23 6 1.5802 0.6260 7.2729 24 6 2.1009 -0.1215 8.4248 25 6 2.7226 -1.1962 7.9215 26 8 2.6405 -1.1920 6.5795 27 6 1.9620 -0.1144 6.1426 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.1263 -0.7993 -1.2056 32 1 1.6055 -1.7198 -1.2952 33 1 1.1488 0.8596 -2.3517 34 1 0.6944 1.9157 -5.4830 35 1 3.1263 -0.7994 1.2056 36 1 1.6053 -1.7198 1.2951 37 1 1.1482 0.8590 2.3519 38 1 0.6057 1.8909 3.7608 39 1 0.5641 2.3742 7.9988 40 1 2.0030 0.1426 9.4674 41 1 3.2170 -1.9560 8.5086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753623007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:37 Heat of formation + Delta-G solvation = -41.333252 kcal Electronic energy + Delta-G solvation = -25541.089181 eV Core-core repulsion = 21530.346328 eV Total energy + Delta-G solvation = -4010.742853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.30086 -42.94335 -39.97488 -37.81251 -36.82871 -34.45879 -33.43283 -32.46927 -30.79133 -30.05282 -29.71395 -26.70093 -25.60944 -24.41627 -22.93251 -22.68143 -21.92883 -20.74350 -19.95696 -18.46647 -18.21065 -17.57724 -17.01830 -16.67384 -16.48835 -15.98563 -15.85411 -15.44103 -15.34398 -14.77445 -14.35015 -14.29243 -13.80214 -13.62487 -13.55165 -13.34755 -13.09779 -12.93863 -12.69665 -12.38374 -12.16994 -12.05222 -11.94593 -11.07448 -10.92845 -10.74107 -10.70712 -10.59852 -10.44809 -10.16698 -9.97584 -9.67952 -9.16448 -8.99831 -8.87959 -8.78170 -6.92676 -5.77227 -3.05634 -0.04648 0.64407 1.72981 2.31153 2.53554 2.91739 3.26519 3.44072 3.49355 3.50939 3.55084 3.92735 4.05088 4.35686 4.54527 4.59023 4.65187 4.78584 4.93032 5.06902 5.11405 5.19215 5.30548 5.35845 5.44321 5.55464 5.57608 5.78548 5.80573 5.94194 5.95697 6.05220 6.08155 6.20902 6.35786 6.41479 6.63975 6.64899 6.75968 6.85299 7.33335 7.70473 8.02655 8.41902 9.53218 10.10308 10.45080 11.45786 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.002242 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.214808 B =12486.008409 C =13492.299333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.717 5.717 16 C 0.554 3.446 17 O -0.522 6.522 18 C -0.088 4.088 19 C -0.094 4.094 20 C 0.081 3.919 21 F -0.131 7.131 22 C -0.083 4.083 23 C -0.115 4.115 24 C -0.214 4.214 25 C 0.021 3.979 26 O -0.167 6.167 27 C 0.097 3.903 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.400 0.600 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 0.340 29.913 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.340 3.660 17 O -0.399 6.399 18 C -0.092 4.092 19 C -0.113 4.113 20 C 0.061 3.939 21 F -0.109 7.109 22 C -0.102 4.102 23 C -0.116 4.116 24 C -0.233 4.233 25 C -0.044 4.044 26 O -0.065 6.065 27 C 0.047 3.953 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.053 -0.681 29.624 29.632 hybrid contribution -0.382 0.749 -0.808 1.166 sum -0.330 0.067 28.816 28.818 Atomic orbital electron populations 1.21804 0.94604 1.02054 1.01516 1.21572 0.96770 1.00575 0.94141 0.90423 1.20571 0.96653 0.94217 0.85308 1.42336 1.66960 1.27669 1.00579 1.19236 1.28651 1.05433 0.83644 0.91144 1.24738 1.01053 0.97398 0.97874 1.69649 1.43585 1.16593 1.28499 0.86175 0.78033 0.77509 0.84403 1.21727 1.21791 1.20753 1.21489 1.00414 0.95306 0.82458 1.45975 1.57305 1.27907 1.05727 1.17875 0.80197 0.85033 0.82882 1.90851 1.39221 1.23454 1.86398 1.18711 1.03569 0.96572 0.90314 1.21130 0.97623 0.93275 0.99321 1.17117 0.98039 0.85275 0.93436 1.91553 1.75974 1.46829 1.96560 1.20564 0.97636 0.95295 0.96695 1.19658 1.02277 0.96551 0.93100 1.22478 1.05269 0.96612 0.98941 1.24233 0.99946 0.99830 0.80440 1.84223 1.60757 1.39513 1.22056 1.19293 0.95373 0.87259 0.93409 0.92708 0.93970 0.91035 0.96068 0.95932 0.78199 0.93525 0.90979 0.90978 0.76444 0.82906 0.83587 0.81818 0.77016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.72 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.19 5.33 -59.91 -0.32 -18.51 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 10 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 15 N -0.72 -8.47 5.23 -61.34 -0.32 -8.79 16 16 C 0.55 7.50 7.77 -12.45 -0.10 7.40 16 17 O -0.52 -8.98 16.11 -5.42 -0.09 -9.06 16 18 C -0.09 -1.00 5.88 -104.90 -0.62 -1.61 16 19 C -0.09 -0.84 9.50 -39.06 -0.37 -1.21 16 20 C 0.08 0.71 7.28 -39.51 -0.29 0.42 16 21 F -0.13 -1.20 17.26 2.25 0.04 -1.16 16 22 C -0.08 -0.66 10.06 -39.18 -0.39 -1.05 16 23 C -0.11 -1.04 6.39 -105.18 -0.67 -1.72 16 24 C -0.21 -1.43 11.15 -37.60 -0.42 -1.85 16 25 C 0.02 0.15 11.96 29.23 0.35 0.50 16 26 O -0.17 -1.93 9.92 -6.31 -0.06 -1.99 16 27 C 0.10 1.11 6.99 -38.02 -0.27 0.84 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 30 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 3.73 5.67 -40.82 -0.23 3.50 16 38 H 0.15 1.03 6.37 -52.49 -0.33 0.70 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.21 0.54 8.06 -52.48 -0.42 0.11 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -34.52 354.77 -7.60 -42.12 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.94 Total: 6.39 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.95 Total: -4.41 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.08 Total: -54.67 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.15 Total: -11.06 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.52 -7.60 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753623007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.787 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds