Wall clock time and date at job start Tue Mar 31 2020 12:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46498 * 109.47606 * 120.00080 * 2 1 3 5 5 C 1.34774 * 120.00211 * 275.00118 * 4 2 1 6 6 O 1.21626 * 119.99488 * 359.97438 * 5 4 2 7 7 C 1.47322 * 120.00117 * 179.97438 * 5 4 2 8 8 N 1.35756 * 126.23267 * 359.68628 * 7 5 4 9 9 C 1.30179 * 108.86659 * 179.87914 * 8 7 5 10 10 N 1.35850 * 108.99702 * 0.39004 * 9 8 7 11 11 H 0.97000 * 126.12670 * 179.76126 * 10 9 8 12 12 C 1.35369 * 107.73451 * 359.75787 * 10 9 8 13 13 C 1.50703 * 126.56864 * 180.02562 * 12 10 9 14 14 F 1.39904 * 109.46855 * 359.97438 * 13 12 10 15 15 F 1.39896 * 109.47378 * 119.99597 * 13 12 10 16 16 F 1.39900 * 109.46898 * 239.99890 * 13 12 10 17 17 C 1.53006 * 109.46809 * 240.00581 * 2 1 3 18 18 H 1.09003 * 109.46914 * 299.99413 * 17 2 1 19 19 C 1.52999 * 109.46809 * 180.02562 * 17 2 1 20 20 N 1.46493 * 109.47135 * 59.99552 * 17 2 1 21 21 C 1.36945 * 119.99892 * 204.99848 * 20 17 2 22 22 H 1.08000 * 119.99422 * 359.72792 * 21 20 17 23 23 C 1.38811 * 120.00031 * 179.72716 * 21 20 17 24 24 N 1.31616 * 119.99707 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47389 * 59.99917 * 25 23 21 27 27 H 1.48501 * 109.47057 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47102 * 299.99569 * 25 23 21 29 29 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46886 * 299.99387 * 1 2 3 31 31 H 1.09003 * 109.47419 * 59.99597 * 1 2 3 32 32 H 0.97004 * 119.99747 * 94.99469 * 4 2 1 33 33 H 1.07999 * 125.49815 * 180.12070 * 9 8 7 34 34 H 1.09003 * 109.46903 * 299.99419 * 19 17 2 35 35 H 1.08994 * 109.47399 * 59.99551 * 19 17 2 36 36 H 1.09003 * 109.46886 * 180.02562 * 19 17 2 37 37 H 0.97000 * 120.00738 * 24.73313 * 20 17 2 38 38 H 0.97004 * 119.99151 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1619 2.4116 7 6 2.6379 -0.7129 3.5600 8 7 2.9892 -2.0216 3.6438 9 6 3.3756 -2.2767 4.8604 10 7 3.2776 -1.1430 5.6024 11 1 3.4987 -1.0540 6.5427 12 6 2.8162 -0.1598 4.7943 13 6 2.5509 1.2717 5.1833 14 9 2.8559 1.4513 6.5369 15 9 3.3483 2.1210 4.4086 16 9 1.2019 1.5717 4.9659 17 6 2.0399 -0.7212 -1.2494 18 1 1.6766 -1.7489 -1.2494 19 6 3.5699 -0.7217 -1.2491 20 7 1.5515 -0.0305 -2.4454 21 6 1.4207 -0.7136 -3.6251 22 1 1.6818 -1.7604 -3.6747 23 6 0.9525 -0.0606 -4.7570 24 7 0.6348 1.2152 -4.6965 25 14 0.7734 -0.9926 -6.3659 26 1 -0.1771 -2.1188 -6.1826 27 1 0.2587 -0.0756 -7.4145 28 1 2.0968 -1.5242 -6.7801 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 3.7148 -3.2360 5.2226 34 1 3.9336 0.3058 -1.2488 35 1 3.9329 -1.2358 -0.3592 36 1 3.9332 -1.2351 -2.1394 37 1 1.3171 0.9097 -2.4009 38 1 0.3080 1.6715 -5.4877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755237377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:10 Heat of formation + Delta-G solvation = -140.217228 kcal Electronic energy + Delta-G solvation = -27480.361209 eV Core-core repulsion = 22943.393646 eV Total energy + Delta-G solvation = -4536.967563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.28536 -48.85305 -48.72859 -43.50456 -40.70761 -38.23853 -35.62624 -34.31630 -33.39029 -32.18782 -30.90754 -30.12516 -27.30387 -25.89407 -25.08649 -23.56098 -23.01187 -21.52449 -21.39201 -20.52386 -19.64372 -19.44042 -19.27561 -18.27577 -17.16277 -17.11269 -16.74363 -16.47531 -15.82940 -15.65995 -15.53556 -15.43198 -15.32762 -15.16223 -15.07199 -14.90358 -14.88483 -14.78330 -14.61674 -14.06294 -13.72147 -13.45211 -13.18976 -12.90632 -12.68693 -12.57533 -12.25299 -12.18282 -11.74531 -11.70902 -11.51713 -11.46551 -11.24398 -10.94463 -10.31211 -10.02867 -8.99090 -7.88989 -5.18156 -0.12525 1.04697 1.26279 1.50945 1.53835 1.59588 1.79302 2.07790 2.25018 2.59173 2.62375 3.00394 3.18980 3.20367 3.44880 3.77067 3.85791 4.00377 4.06572 4.21857 4.36662 4.43746 4.60807 4.78975 4.87993 4.91018 4.97351 5.06792 5.18245 5.32632 5.49072 5.52722 5.59125 6.01677 6.31437 6.34420 6.60379 7.13023 7.38069 8.10945 8.35166 9.34348 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.002904 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.061015 B = 9639.334602 C =10185.270452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.150 3.850 3 H 0.065 0.935 4 N -0.685 5.685 5 C 0.582 3.418 6 O -0.562 6.562 7 C 0.006 3.994 8 N -0.488 5.488 9 C 0.261 3.739 10 N -0.521 5.521 11 H 0.452 0.548 12 C -0.063 4.063 13 C 0.550 3.450 14 F -0.170 7.170 15 F -0.169 7.169 16 F -0.168 7.168 17 C 0.169 3.831 18 H 0.061 0.939 19 C -0.154 4.154 20 N -0.729 5.729 21 C -0.235 4.235 22 H 0.080 0.920 23 C -0.075 4.075 24 N -0.970 5.970 25 Si 0.972 3.028 26 H -0.277 1.277 27 H -0.300 1.300 28 H -0.279 1.279 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.417 0.583 33 H 0.287 0.713 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.372 0.628 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.592 -9.501 28.350 30.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.044 3.956 3 H 0.083 0.917 4 N -0.336 5.336 5 C 0.368 3.632 6 O -0.440 6.440 7 C -0.127 4.127 8 N -0.207 5.207 9 C -0.024 4.024 10 N -0.125 5.125 11 H 0.296 0.704 12 C -0.186 4.186 13 C 0.494 3.506 14 F -0.152 7.152 15 F -0.150 7.150 16 F -0.150 7.150 17 C 0.060 3.940 18 H 0.079 0.921 19 C -0.213 4.213 20 N -0.370 5.370 21 C -0.367 4.367 22 H 0.098 0.902 23 C -0.267 4.267 24 N -0.621 5.621 25 Si 0.801 3.199 26 H -0.203 1.203 27 H -0.227 1.227 28 H -0.205 1.205 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.254 0.746 33 H 0.302 0.698 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.204 0.796 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.335 -9.345 27.564 30.015 hybrid contribution -0.134 0.834 -0.099 0.850 sum 7.201 -8.511 27.465 29.642 Atomic orbital electron populations 1.21926 0.94835 1.02165 1.01142 1.21001 0.94327 0.96481 0.83754 0.91715 1.45604 1.65174 1.14665 1.08130 1.17277 0.77602 0.85636 0.82715 1.90862 1.51859 1.16145 1.85121 1.20343 1.07398 0.92470 0.92490 1.70810 1.17281 1.11380 1.21218 1.26683 0.97622 0.93010 0.85077 1.42914 1.47820 1.07543 1.14245 0.70375 1.20463 1.13354 0.90878 0.93943 1.16973 0.74854 0.84480 0.74246 1.93203 1.92934 1.96177 1.32848 1.93265 1.73728 1.72676 1.75336 1.93263 1.33297 1.93953 1.94450 1.20527 0.92945 0.95563 0.84928 0.92145 1.22286 0.97545 1.00558 1.00948 1.42449 1.78395 1.10332 1.05809 1.19568 1.34730 0.94401 0.87954 0.90190 1.25531 1.02971 0.96833 1.01414 1.69828 1.52424 1.10387 1.29466 0.85234 0.77915 0.77285 0.79442 1.20267 1.22662 1.20485 0.91826 0.93222 0.92602 0.74593 0.69785 0.94786 0.91261 0.93629 0.79566 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.33 71.98 0.67 -4.53 16 2 C 0.15 5.40 2.20 44.99 0.10 5.50 16 3 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 4 N -0.68 -20.49 4.38 -445.89 -1.95 -22.44 16 5 C 0.58 18.39 7.78 86.63 0.67 19.06 16 6 O -0.56 -21.41 13.58 -4.11 -0.06 -21.47 16 7 C 0.01 0.15 6.98 40.50 0.28 0.43 16 8 N -0.49 -8.64 11.01 -188.81 -2.08 -10.72 16 9 C 0.26 1.78 13.04 180.10 2.35 4.12 16 10 N -0.52 -4.16 5.97 -185.90 -1.11 -5.27 16 11 H 0.45 0.05 8.77 -92.71 -0.81 -0.76 16 12 C -0.06 -1.23 6.50 41.59 0.27 -0.96 16 13 C 0.55 12.61 2.81 71.24 0.20 12.81 16 14 F -0.17 -2.90 17.03 44.97 0.77 -2.13 16 15 F -0.17 -4.74 16.18 44.97 0.73 -4.01 16 16 F -0.17 -4.68 16.17 44.97 0.73 -3.95 16 17 C 0.17 6.60 2.52 44.99 0.11 6.72 16 18 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 19 C -0.15 -5.50 9.34 71.98 0.67 -4.83 16 20 N -0.73 -36.46 4.43 -322.94 -1.43 -37.89 16 21 C -0.23 -12.81 9.93 84.03 0.83 -11.97 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 24 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 25 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 2.33 7.44 -2.39 -0.02 2.31 16 32 H 0.42 10.69 8.10 -92.71 -0.75 9.94 16 33 H 0.29 -1.68 8.06 -2.91 -0.02 -1.70 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 2.03 7.44 -2.39 -0.02 2.01 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.37 20.44 7.57 -92.71 -0.70 19.74 16 38 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -76.30 340.35 3.42 -72.88 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -1.11 Total: 23.97 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 6.63 Total: 22.51 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -6.29 Total: -135.90 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.06 Total: -21.47 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 2.22 Total: -10.10 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.30 3.42 -72.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755237377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.341 kcal (2) G-P(sol) polarization free energy of solvation -76.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds