Wall clock time and date at job start Tue Mar 31 2020 12:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 N 1.46505 * 109.46891 * 240.00156 * 2 1 3 5 5 C 1.36937 * 119.99900 * 84.99804 * 4 2 1 6 6 H 1.07999 * 120.00242 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99908 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00190 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47037 * 60.00444 * 9 7 5 11 11 H 1.48503 * 109.47379 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47079 * 300.00127 * 9 7 5 13 13 C 1.53001 * 109.47375 * 119.99885 * 2 1 3 14 14 H 1.08999 * 109.46935 * 185.00081 * 13 2 1 15 15 C 1.52999 * 109.46944 * 65.00342 * 13 2 1 16 16 N 1.46499 * 109.47193 * 305.00139 * 13 2 1 17 17 C 1.34777 * 119.99665 * 205.27836 * 16 13 2 18 18 O 1.21573 * 120.00276 * 359.72080 * 17 16 13 19 19 C 1.47716 * 119.99706 * 179.72381 * 17 16 13 20 20 N 1.31806 * 126.51527 * 359.68970 * 19 17 16 21 21 N 1.28474 * 110.06914 * 179.82052 * 20 19 17 22 22 H 0.96994 * 124.88430 * 180.15887 * 21 20 19 23 23 C 1.35033 * 110.22731 * 0.45000 * 21 20 19 24 24 C 1.35357 * 107.23150 * 359.72900 * 23 21 20 25 25 C 1.50701 * 127.24955 * 179.97438 * 24 23 21 26 26 F 1.39908 * 109.46835 * 0.02562 * 25 24 23 27 27 F 1.39895 * 109.47270 * 119.99773 * 25 24 23 28 28 F 1.39901 * 109.47231 * 240.00246 * 25 24 23 29 29 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46766 * 299.99565 * 1 2 3 31 31 H 1.08994 * 109.47543 * 59.99852 * 1 2 3 32 32 H 0.96993 * 119.99762 * 264.99016 * 4 2 1 33 33 H 0.97002 * 120.00522 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46823 * 179.97438 * 15 13 2 35 35 H 1.08999 * 109.47091 * 299.99643 * 15 13 2 36 36 H 1.08996 * 109.47098 * 60.00014 * 15 13 2 37 37 H 0.97001 * 119.99790 * 24.99549 * 16 13 2 38 38 H 1.08006 * 126.38170 * 179.70734 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8917 1.0403 -2.4244 7 6 2.6121 -0.6616 -3.5091 8 7 2.9252 -1.9387 -3.4500 9 14 2.7898 0.2700 -5.1184 10 1 3.7443 1.3932 -4.9373 11 1 3.2988 -0.6483 -6.1685 12 1 1.4669 0.8058 -5.5288 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6442 1.2951 15 6 1.6354 -2.1954 1.1879 16 7 1.4559 -0.1036 2.4424 17 6 2.0942 -0.1890 3.6264 18 8 3.1521 -0.7828 3.7053 19 6 1.5082 0.4390 4.8282 20 7 0.3781 1.1146 4.8881 21 7 0.1687 1.5177 6.0899 22 1 -0.6018 2.0329 6.3759 23 6 1.1786 1.1264 6.8963 24 6 2.0564 0.4346 6.1326 25 6 3.3463 -0.2049 6.5778 26 9 3.5290 0.0179 7.9469 27 9 3.2933 -1.5812 6.3329 28 9 4.4138 0.3545 5.8673 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 2.2491 -1.6317 -1.1526 33 1 3.2485 -2.3960 -4.2420 34 1 1.9992 -2.7093 2.0777 35 1 0.5491 -2.2724 1.1421 36 1 2.0700 -2.6549 0.3002 37 1 0.6119 0.3702 2.3794 38 1 1.2693 1.3281 7.9535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755237616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:39 Heat of formation + Delta-G solvation = -95.214523 kcal Electronic energy + Delta-G solvation = -27400.272354 eV Core-core repulsion = 22865.256254 eV Total energy + Delta-G solvation = -4535.016099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.05470 -47.64611 -47.43945 -43.30487 -39.54247 -36.89038 -33.95461 -32.95273 -32.20483 -31.33867 -29.27089 -28.17659 -26.34024 -24.94848 -24.22744 -22.84561 -21.68236 -20.34963 -19.57565 -19.03312 -18.39564 -18.20014 -17.61557 -17.19947 -16.97396 -16.24843 -15.51167 -14.82841 -14.51295 -14.45374 -14.41640 -14.36563 -14.03921 -13.93810 -13.75030 -13.64037 -13.59589 -13.43226 -12.76439 -12.59235 -12.41749 -11.94794 -11.60630 -11.50463 -11.26930 -10.92448 -10.80081 -10.47289 -10.26623 -10.09962 -10.08023 -10.00794 -9.95859 -9.63921 -8.92114 -8.81014 -6.98580 -5.76232 -3.05796 1.13142 1.20065 2.10712 2.71184 3.16429 3.24378 3.45256 3.49760 3.50685 3.59356 3.87227 4.21616 4.41391 4.45810 4.60084 4.70987 5.04333 5.34340 5.45353 5.50341 5.65584 5.68356 5.85555 6.09794 6.17956 6.27278 6.32844 6.43159 6.47874 6.65971 6.74555 6.90766 7.10015 7.13174 7.66411 7.70193 8.26099 8.42288 9.53458 10.08757 10.43861 11.46289 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002912 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.671201 B = 9612.420878 C =10126.780384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.135 3.865 14 H 0.092 0.908 15 C -0.160 4.160 16 N -0.700 5.700 17 C 0.589 3.411 18 O -0.515 6.515 19 C 0.047 3.953 20 N -0.247 5.247 21 N -0.375 5.375 22 H 0.455 0.545 23 C 0.057 3.943 24 C -0.259 4.259 25 C 0.551 3.449 26 F -0.185 7.185 27 F -0.165 7.165 28 F -0.164 7.164 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.404 0.596 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 6.950 25.460 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.031 3.969 14 H 0.110 0.890 15 C -0.218 4.218 16 N -0.352 5.352 17 C 0.371 3.629 18 O -0.388 6.388 19 C -0.116 4.116 20 N -0.081 5.081 21 N -0.087 5.087 22 H 0.301 0.699 23 C -0.090 4.090 24 C -0.271 4.271 25 C 0.495 3.505 26 F -0.167 7.167 27 F -0.146 7.146 28 F -0.145 7.145 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.241 0.759 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.261 6.948 24.642 26.612 hybrid contribution 0.049 0.405 -0.124 0.427 sum -7.211 7.353 24.518 26.593 Atomic orbital electron populations 1.22540 0.99283 1.01309 0.99795 1.20357 0.92223 0.95617 0.86056 0.92963 1.42440 1.78244 1.10790 1.04758 1.19180 1.36972 0.93951 0.87161 0.91169 1.24737 1.01937 0.95990 0.98079 1.69646 1.50588 1.08642 1.29084 0.86261 0.77742 0.78616 0.83492 1.21241 1.21703 1.21312 1.21440 0.99239 0.93013 0.83214 0.88974 1.22148 1.01589 0.95564 1.02493 1.46085 1.25599 1.55770 1.07767 1.16829 0.84346 0.80132 0.81602 1.90882 1.21262 1.42066 1.84564 1.22027 0.93175 1.01797 0.94607 1.73719 1.17646 1.13800 1.02962 1.43343 1.19854 1.40554 1.04911 0.69858 1.22704 0.88716 0.98600 0.98998 1.20323 0.99705 1.11795 0.95305 1.16938 0.82947 0.76719 0.73880 1.93157 1.96023 1.94661 1.32819 1.93246 1.96500 1.30970 1.93896 1.93254 1.58147 1.84922 1.78222 0.92766 0.94791 0.92355 0.77731 0.93378 0.92892 0.92475 0.90311 0.75902 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.01 37.16 0.33 -2.54 16 2 C 0.17 3.28 2.93 -67.93 -0.20 3.08 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.72 -17.66 5.03 -53.42 -0.27 -17.93 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 9 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.14 2.38 2.62 -67.93 -0.18 2.20 16 14 H 0.09 1.83 7.57 -51.93 -0.39 1.44 16 15 C -0.16 -2.75 9.00 37.16 0.33 -2.42 16 16 N -0.70 -10.46 4.98 -54.79 -0.27 -10.73 16 17 C 0.59 9.28 7.79 -12.39 -0.10 9.19 16 18 O -0.51 -9.67 14.14 5.30 0.07 -9.60 16 19 C 0.05 0.60 7.13 -82.77 -0.59 0.01 16 20 N -0.25 -2.44 11.92 33.42 0.40 -2.05 16 21 N -0.37 -2.09 6.83 30.47 0.21 -1.88 16 22 H 0.46 0.50 8.96 -190.44 -1.71 -1.20 16 23 C 0.06 0.35 11.48 -17.17 -0.20 0.15 16 24 C -0.26 -2.82 5.66 -104.41 -0.59 -3.41 16 25 C 0.55 6.86 2.85 36.01 0.10 6.97 16 26 F -0.19 -1.88 16.87 2.25 0.04 -1.84 16 27 F -0.16 -2.39 16.41 2.25 0.04 -2.35 16 28 F -0.16 -2.41 16.41 2.25 0.04 -2.37 16 29 H 0.05 0.93 6.56 -51.93 -0.34 0.59 16 30 H 0.03 0.46 6.29 -51.93 -0.33 0.14 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.39 10.02 5.77 -40.82 -0.24 9.79 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 36 H 0.08 1.50 6.29 -51.93 -0.33 1.17 16 37 H 0.40 5.29 6.30 -40.82 -0.26 5.03 16 38 H 0.20 0.36 8.02 -52.48 -0.42 -0.06 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -34.19 333.30 -5.51 -39.70 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.16 Total: 7.94 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.33 Total: 6.04 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.79 Total: -59.82 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.19 -5.51 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755237616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.515 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds