Wall clock time and date at job start Tue Mar 31 2020 12:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 N 1.46505 * 109.46891 * 240.00156 * 2 1 3 5 5 C 1.36937 * 119.99900 * 84.99804 * 4 2 1 6 6 H 1.07999 * 120.00242 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99908 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00190 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47037 * 60.00444 * 9 7 5 11 11 H 1.48503 * 109.47379 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47079 * 300.00127 * 9 7 5 13 13 C 1.53001 * 109.47375 * 119.99885 * 2 1 3 14 14 H 1.08999 * 109.46935 * 185.00081 * 13 2 1 15 15 C 1.52999 * 109.46944 * 65.00342 * 13 2 1 16 16 N 1.46499 * 109.47193 * 305.00139 * 13 2 1 17 17 C 1.34777 * 119.99665 * 205.27836 * 16 13 2 18 18 O 1.21573 * 120.00276 * 359.72080 * 17 16 13 19 19 C 1.47716 * 119.99706 * 179.72381 * 17 16 13 20 20 N 1.31806 * 126.51527 * 359.68970 * 19 17 16 21 21 N 1.28474 * 110.06914 * 179.82052 * 20 19 17 22 22 H 0.96994 * 124.88430 * 180.15887 * 21 20 19 23 23 C 1.35033 * 110.22731 * 0.45000 * 21 20 19 24 24 C 1.35357 * 107.23150 * 359.72900 * 23 21 20 25 25 C 1.50701 * 127.24955 * 179.97438 * 24 23 21 26 26 F 1.39908 * 109.46835 * 0.02562 * 25 24 23 27 27 F 1.39895 * 109.47270 * 119.99773 * 25 24 23 28 28 F 1.39901 * 109.47231 * 240.00246 * 25 24 23 29 29 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46766 * 299.99565 * 1 2 3 31 31 H 1.08994 * 109.47543 * 59.99852 * 1 2 3 32 32 H 0.96993 * 119.99762 * 264.99016 * 4 2 1 33 33 H 0.97002 * 120.00522 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46823 * 179.97438 * 15 13 2 35 35 H 1.08999 * 109.47091 * 299.99643 * 15 13 2 36 36 H 1.08996 * 109.47098 * 60.00014 * 15 13 2 37 37 H 0.97001 * 119.99790 * 24.99549 * 16 13 2 38 38 H 1.08006 * 126.38170 * 179.70734 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8917 1.0403 -2.4244 7 6 2.6121 -0.6616 -3.5091 8 7 2.9252 -1.9387 -3.4500 9 14 2.7898 0.2700 -5.1184 10 1 3.7443 1.3932 -4.9373 11 1 3.2988 -0.6483 -6.1685 12 1 1.4669 0.8058 -5.5288 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6442 1.2951 15 6 1.6354 -2.1954 1.1879 16 7 1.4559 -0.1036 2.4424 17 6 2.0942 -0.1890 3.6264 18 8 3.1521 -0.7828 3.7053 19 6 1.5082 0.4390 4.8282 20 7 0.3781 1.1146 4.8881 21 7 0.1687 1.5177 6.0899 22 1 -0.6018 2.0329 6.3759 23 6 1.1786 1.1264 6.8963 24 6 2.0564 0.4346 6.1326 25 6 3.3463 -0.2049 6.5778 26 9 3.5290 0.0179 7.9469 27 9 3.2933 -1.5812 6.3329 28 9 4.4138 0.3545 5.8673 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 2.2491 -1.6317 -1.1526 33 1 3.2485 -2.3960 -4.2420 34 1 1.9992 -2.7093 2.0777 35 1 0.5491 -2.2724 1.1421 36 1 2.0700 -2.6549 0.3002 37 1 0.6119 0.3702 2.3794 38 1 1.2693 1.3281 7.9535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755237616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:36 Heat of formation + Delta-G solvation = -121.091930 kcal Electronic energy + Delta-G solvation = -27401.394482 eV Core-core repulsion = 22865.256254 eV Total energy + Delta-G solvation = -4536.138228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -51.00687 -48.56135 -48.48008 -43.99442 -40.83593 -38.42402 -35.64447 -33.86885 -33.53926 -32.46538 -30.82278 -29.80487 -27.19743 -26.21406 -25.92018 -24.30753 -22.48886 -21.47398 -20.74881 -20.11775 -19.42846 -19.37469 -19.10366 -18.40180 -17.77721 -17.07167 -16.85327 -16.59871 -15.95927 -15.84908 -15.39869 -15.35941 -15.29218 -15.12570 -14.92126 -14.79251 -14.67273 -14.64693 -14.33044 -13.93022 -13.49915 -13.46151 -13.09694 -12.99323 -12.76164 -12.63709 -12.27453 -12.16933 -12.03659 -11.66708 -11.61208 -11.32943 -10.93165 -10.84146 -10.68489 -10.14383 -9.02241 -7.91866 -5.20981 0.22361 0.60021 1.48721 1.50306 1.52265 1.58070 1.82006 2.11224 2.14540 2.59448 2.73990 3.03694 3.40529 3.41731 3.49825 3.78940 3.87042 3.97214 4.00309 4.07941 4.32232 4.38316 4.60065 4.62553 4.70390 4.87169 4.96498 5.01941 5.20582 5.25032 5.44996 5.54577 5.62884 5.85971 6.29833 6.34326 6.60273 7.07833 7.36606 8.10316 8.34225 9.31492 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002912 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.671201 B = 9612.420878 C =10126.780384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.047 0.953 4 N -0.733 5.733 5 C -0.241 4.241 6 H 0.078 0.922 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.276 1.276 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.150 4.150 16 N -0.690 5.690 17 C 0.586 3.414 18 O -0.554 6.554 19 C 0.017 3.983 20 N -0.247 5.247 21 N -0.347 5.347 22 H 0.478 0.522 23 C 0.098 3.902 24 C -0.290 4.290 25 C 0.547 3.453 26 F -0.171 7.171 27 F -0.183 7.183 28 F -0.184 7.184 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.377 0.623 33 H 0.251 0.749 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.415 0.585 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 9.117 27.669 30.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.065 0.935 4 N -0.375 5.375 5 C -0.372 4.372 6 H 0.096 0.904 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.202 1.202 13 C 0.043 3.957 14 H 0.081 0.919 15 C -0.208 4.208 16 N -0.343 5.343 17 C 0.370 3.630 18 O -0.430 6.430 19 C -0.145 4.145 20 N -0.082 5.082 21 N -0.063 5.063 22 H 0.330 0.670 23 C -0.050 4.050 24 C -0.303 4.303 25 C 0.492 3.508 26 F -0.152 7.152 27 F -0.165 7.165 28 F -0.166 7.166 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.211 0.789 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.254 0.746 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.590 9.183 26.897 29.995 hybrid contribution 0.702 -0.186 -0.616 0.952 sum -8.888 8.997 26.281 29.166 Atomic orbital electron populations 1.22353 0.96592 1.01690 1.01097 1.20509 0.93904 0.94865 0.84986 0.93471 1.42629 1.78668 1.10541 1.05711 1.19586 1.35217 0.94335 0.88100 0.90442 1.25539 1.02813 0.96881 1.01453 1.69811 1.52444 1.10218 1.29517 0.85225 0.77977 0.77241 0.79374 1.20615 1.22415 1.20209 1.20997 0.97648 0.93268 0.83738 0.91902 1.22030 1.02357 0.95074 1.01326 1.45834 1.25858 1.55737 1.06891 1.17266 0.83811 0.79488 0.82437 1.90856 1.23036 1.43810 1.85322 1.21499 0.94920 1.04146 0.93955 1.73631 1.16360 1.13257 1.04994 1.43467 1.20226 1.39034 1.03573 0.67042 1.23324 0.86373 0.94951 1.00315 1.20338 1.00170 1.14232 0.95533 1.17160 0.83356 0.76001 0.74329 1.93173 1.96023 1.94483 1.31510 1.93203 1.96589 1.32568 1.94110 1.93208 1.59387 1.85106 1.78867 0.92847 0.90876 0.93612 0.78888 0.94054 0.92899 0.90855 0.92556 0.74573 0.73315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 9.01 71.98 0.65 -4.47 16 2 C 0.17 6.48 2.93 44.99 0.13 6.61 16 3 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 4 N -0.73 -36.74 5.03 -322.93 -1.63 -38.36 16 5 C -0.24 -13.29 9.93 84.03 0.83 -12.45 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 7 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 8 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 9 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.15 5.35 2.62 44.99 0.12 5.47 16 14 H 0.06 2.64 7.57 -2.39 -0.02 2.62 16 15 C -0.15 -5.27 9.00 71.98 0.65 -4.62 16 16 N -0.69 -20.29 4.98 -445.53 -2.22 -22.51 16 17 C 0.59 18.54 7.79 86.75 0.68 19.21 16 18 O -0.55 -21.68 14.14 -3.95 -0.06 -21.74 16 19 C 0.02 0.40 7.13 42.46 0.30 0.71 16 20 N -0.25 -4.12 11.92 -48.18 -0.57 -4.70 16 21 N -0.35 -2.30 6.83 -57.51 -0.39 -2.69 16 22 H 0.48 -1.48 8.96 -220.00 -1.97 -3.45 16 23 C 0.10 0.75 11.48 83.54 0.96 1.71 16 24 C -0.29 -5.73 5.66 -19.73 -0.11 -5.84 16 25 C 0.55 13.30 2.85 71.24 0.20 13.51 16 26 F -0.17 -3.14 16.87 44.97 0.76 -2.38 16 27 F -0.18 -5.41 16.41 44.97 0.74 -4.67 16 28 F -0.18 -5.53 16.41 44.97 0.74 -4.79 16 29 H 0.05 1.75 6.56 -2.39 -0.02 1.73 16 30 H 0.07 1.79 6.29 -2.38 -0.02 1.77 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.38 20.26 5.77 -92.71 -0.54 19.72 16 33 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.31 6.56 -2.39 -0.02 2.29 16 36 H 0.06 2.24 6.29 -2.39 -0.02 2.23 16 37 H 0.42 10.10 6.30 -92.71 -0.58 9.52 16 38 H 0.25 -0.71 8.02 -2.91 -0.02 -0.73 16 Total: -1.00 -77.97 333.30 2.63 -75.34 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -1.92 Total: 21.60 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 4.88 Total: 16.00 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -4.53 Total: -127.69 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.06 Total: -21.74 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 2.24 Total: -11.85 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -77.97 2.63 -75.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755237616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.751 kcal (2) G-P(sol) polarization free energy of solvation -77.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds