Wall clock time and date at job start Tue Mar 31 2020 12:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 N 1.46494 * 109.47247 * 120.00008 * 2 1 3 5 5 C 1.34772 * 120.00121 * 275.00151 * 4 2 1 6 6 O 1.21568 * 120.00286 * 0.02562 * 5 4 2 7 7 C 1.47710 * 119.99875 * 180.02562 * 5 4 2 8 8 N 1.31811 * 126.52054 * 0.03619 * 7 5 4 9 9 N 1.28465 * 110.07131 * 179.97438 * 8 7 5 10 10 H 0.97003 * 124.88082 * 180.02562 * 9 8 7 11 11 C 1.35030 * 110.23650 * 359.73777 * 9 8 7 12 12 C 1.35362 * 107.22609 * 0.43000 * 11 9 8 13 13 C 1.50706 * 127.25156 * 179.85104 * 12 11 9 14 14 F 1.39900 * 109.46715 * 359.68640 * 13 12 11 15 15 F 1.39895 * 109.47042 * 119.68420 * 13 12 11 16 16 F 1.39897 * 109.47068 * 239.68730 * 13 12 11 17 17 C 1.53000 * 109.47301 * 240.00478 * 2 1 3 18 18 H 1.09008 * 109.46896 * 299.99671 * 17 2 1 19 19 C 1.52995 * 109.47301 * 179.97438 * 17 2 1 20 20 N 1.46504 * 109.47446 * 59.99545 * 17 2 1 21 21 C 1.36936 * 120.00096 * 205.00610 * 20 17 2 22 22 H 1.07994 * 119.99997 * 359.97438 * 21 20 17 23 23 C 1.38808 * 119.99658 * 180.02562 * 21 20 17 24 24 N 1.31626 * 119.99948 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00328 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47226 * 90.00151 * 25 23 21 27 27 H 1.48498 * 109.47191 * 210.00362 * 25 23 21 28 28 H 1.48498 * 109.46771 * 329.99713 * 25 23 21 29 29 H 1.09006 * 109.47387 * 60.00133 * 1 2 3 30 30 H 1.08999 * 109.47321 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47656 * 299.99806 * 1 2 3 32 32 H 0.97002 * 120.00040 * 95.00250 * 4 2 1 33 33 H 1.08000 * 126.39132 * 180.29074 * 11 9 8 34 34 H 1.09000 * 109.47128 * 299.99522 * 19 17 2 35 35 H 1.08999 * 109.47441 * 60.00073 * 19 17 2 36 36 H 1.09006 * 109.46895 * 179.97438 * 19 17 2 37 37 H 0.96999 * 119.99364 * 25.00214 * 20 17 2 38 38 H 0.96994 * 119.99783 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1611 2.4119 7 6 2.6399 -0.7145 3.5629 8 7 2.9896 -1.9825 3.6488 9 7 3.3711 -2.2546 4.8449 10 1 3.6746 -3.1254 5.1458 11 6 3.2949 -1.1527 5.6215 12 6 2.8270 -0.1470 4.8456 13 6 2.5665 1.2786 5.2591 14 9 2.8784 1.4356 6.6138 15 9 3.3621 2.1387 4.4947 16 9 1.2171 1.5848 5.0527 17 6 2.0400 -0.7211 -1.2493 18 1 1.6767 -1.7489 -1.2493 19 6 3.5699 -0.7206 -1.2496 20 7 1.5516 -0.0305 -2.4455 21 6 1.4208 -0.7137 -3.6251 22 1 1.6780 -1.7614 -3.6736 23 6 0.9586 -0.0591 -4.7585 24 7 0.8333 -0.7156 -5.8925 25 14 0.5143 1.7534 -4.6746 26 1 1.7117 2.5718 -4.9935 27 1 -0.5607 2.0455 -5.6565 28 1 0.0387 2.0836 -3.3072 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6317 1.1525 33 1 3.5561 -1.0865 6.6674 34 1 3.9329 0.3072 -1.2498 35 1 3.9337 -1.2342 -0.3597 36 1 3.9333 -1.2348 -2.1395 37 1 1.3209 0.9106 -2.4018 38 1 0.5099 -0.2583 -6.6844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755237617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:43 Heat of formation + Delta-G solvation = -122.102488 kcal Electronic energy + Delta-G solvation = -27485.868195 eV Core-core repulsion = 22949.686146 eV Total energy + Delta-G solvation = -4536.182049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.00705 -48.56267 -48.47828 -43.98961 -40.81301 -38.38624 -35.71145 -33.89801 -33.59623 -32.59935 -31.04006 -30.49027 -27.18411 -25.80260 -25.70807 -23.77682 -22.46165 -21.69014 -21.32300 -20.24785 -19.72675 -19.37479 -19.10127 -18.33748 -17.76950 -17.26545 -16.98069 -16.37700 -15.99876 -15.65193 -15.39798 -15.35271 -15.29541 -14.94869 -14.89182 -14.70325 -14.67095 -14.64373 -14.42800 -14.23227 -13.80005 -13.46630 -13.27848 -13.07158 -12.76347 -12.63644 -12.36277 -12.26418 -12.06262 -11.79533 -11.49799 -11.35185 -11.02650 -10.83730 -10.68178 -10.16833 -9.32013 -7.99934 -5.33179 0.23118 0.60249 1.41328 1.42109 1.48704 1.50268 1.81246 2.11953 2.13326 2.50300 2.74224 3.03601 3.32463 3.38851 3.50129 3.67664 3.72089 3.82811 3.99265 4.14562 4.29074 4.38199 4.57248 4.63434 4.73302 4.84006 4.92232 5.00447 5.13650 5.29103 5.42658 5.48725 5.79945 5.85916 6.23495 6.34139 6.60273 7.05985 7.09809 7.84002 8.02278 9.21285 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.003149 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.967430 B = 8890.562206 C = 9576.371840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.074 0.926 4 N -0.689 5.689 5 C 0.590 3.410 6 O -0.553 6.553 7 C 0.017 3.983 8 N -0.247 5.247 9 N -0.348 5.348 10 H 0.477 0.523 11 C 0.097 3.903 12 C -0.290 4.290 13 C 0.547 3.453 14 F -0.171 7.171 15 F -0.183 7.183 16 F -0.183 7.183 17 C 0.172 3.828 18 H 0.062 0.938 19 C -0.156 4.156 20 N -0.745 5.745 21 C -0.220 4.220 22 H 0.064 0.936 23 C -0.059 4.059 24 N -0.983 5.983 25 Si 0.944 3.056 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.253 1.253 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.416 0.584 33 H 0.249 0.751 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.364 0.636 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -4.083 31.808 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.093 0.907 4 N -0.340 5.340 5 C 0.374 3.626 6 O -0.429 6.429 7 C -0.145 4.145 8 N -0.082 5.082 9 N -0.064 5.064 10 H 0.329 0.671 11 C -0.051 4.051 12 C -0.303 4.303 13 C 0.492 3.508 14 F -0.153 7.153 15 F -0.165 7.165 16 F -0.164 7.164 17 C 0.064 3.936 18 H 0.080 0.920 19 C -0.216 4.216 20 N -0.389 5.389 21 C -0.351 4.351 22 H 0.082 0.918 23 C -0.251 4.251 24 N -0.633 5.633 25 Si 0.772 3.228 26 H -0.209 1.209 27 H -0.224 1.224 28 H -0.177 1.177 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.253 0.747 33 H 0.266 0.734 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.197 0.803 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.954 -4.383 31.034 32.105 hybrid contribution -0.268 1.265 -0.179 1.306 sum 6.686 -3.117 30.855 31.725 Atomic orbital electron populations 1.22005 0.94668 1.02561 1.01524 1.21060 0.94514 0.96850 0.83529 0.90735 1.45640 1.65567 1.14646 1.08190 1.17158 0.77578 0.85661 0.82188 1.90850 1.51199 1.16059 1.84743 1.21520 1.07264 0.91394 0.94336 1.73644 1.15168 1.14838 1.04592 1.43474 1.44930 1.13288 1.04704 0.67107 1.23323 0.97405 0.83954 1.00424 1.20339 1.18638 0.95141 0.96142 1.17147 0.73966 0.85520 0.74161 1.93172 1.92781 1.96437 1.32887 1.93206 1.74133 1.73014 1.76126 1.93204 1.34336 1.94210 1.94700 1.20508 0.93139 0.95740 0.84225 0.91972 1.22281 0.97053 1.01165 1.01094 1.42644 1.79968 1.09553 1.06717 1.18976 1.34789 0.94614 0.86743 0.91771 1.25361 1.02517 1.01885 0.95298 1.69859 1.54863 1.37515 1.01112 0.85569 0.77638 0.81526 0.78043 1.20877 1.22410 1.17726 0.92233 0.91702 0.92779 0.74671 0.73446 0.93819 0.91017 0.93936 0.80262 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.33 71.98 0.67 -4.15 16 2 C 0.15 4.67 2.21 44.99 0.10 4.77 16 3 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 4 N -0.69 -18.34 4.38 -445.56 -1.95 -20.30 16 5 C 0.59 17.05 7.79 86.75 0.68 17.73 16 6 O -0.55 -19.78 14.14 -3.93 -0.06 -19.83 16 7 C 0.02 0.38 7.13 42.46 0.30 0.68 16 8 N -0.25 -3.85 11.92 -48.17 -0.57 -4.42 16 9 N -0.35 -2.06 6.83 -57.51 -0.39 -2.45 16 10 H 0.48 -1.66 8.96 -219.99 -1.97 -3.64 16 11 C 0.10 0.66 11.48 83.54 0.96 1.61 16 12 C -0.29 -5.32 5.66 -19.72 -0.11 -5.43 16 13 C 0.55 12.45 2.85 71.24 0.20 12.65 16 14 F -0.17 -2.96 16.87 44.97 0.76 -2.20 16 15 F -0.18 -5.13 16.41 44.97 0.74 -4.39 16 16 F -0.18 -5.09 16.42 44.97 0.74 -4.35 16 17 C 0.17 6.20 2.52 44.99 0.11 6.32 16 18 H 0.06 2.24 8.08 -2.38 -0.02 2.22 16 19 C -0.16 -5.18 9.33 71.98 0.67 -4.51 16 20 N -0.75 -33.81 4.23 -322.94 -1.37 -35.18 16 21 C -0.22 -12.19 10.41 84.03 0.87 -11.31 16 22 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 23 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 24 N -0.98 -62.58 13.97 21.65 0.30 -62.28 16 25 Si 0.94 45.89 27.74 68.60 1.90 47.79 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 29 H 0.06 2.12 7.45 -2.38 -0.02 2.11 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.42 9.25 8.11 -92.71 -0.75 8.50 16 33 H 0.25 -0.86 8.02 -2.91 -0.02 -0.88 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.91 7.45 -2.39 -0.02 1.89 16 36 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.36 16.36 5.45 -92.71 -0.50 15.86 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -78.50 337.89 2.89 -75.60 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -2.13 Total: 16.64 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 4.93 Total: 15.37 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -3.98 Total: -124.63 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.06 Total: -19.83 kcal Atomic # 9 Polarization: -13.18 SS G_CDS: 2.23 Total: -10.95 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -78.50 2.89 -75.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755237617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.498 kcal (2) G-P(sol) polarization free energy of solvation -78.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds