Wall clock time and date at job start Tue Mar 31 2020 12:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47245 * 2 1 4 4 N 1.46501 * 109.47476 * 120.00069 * 2 1 3 5 5 C 1.36941 * 119.99908 * 275.00105 * 4 2 1 6 6 H 1.07999 * 119.99879 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00113 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99795 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00148 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46908 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46976 * 120.00346 * 9 7 5 12 12 H 1.48502 * 109.47014 * 240.00219 * 9 7 5 13 13 C 1.53000 * 109.47329 * 240.00454 * 2 1 3 14 14 H 1.08999 * 109.47303 * 175.00126 * 13 2 1 15 15 C 1.53002 * 109.46630 * 294.99579 * 13 2 1 16 16 N 1.46493 * 109.47174 * 54.99423 * 13 2 1 17 17 C 1.34782 * 120.00049 * 155.00313 * 16 13 2 18 18 O 1.21568 * 119.99473 * 0.02562 * 17 16 13 19 19 C 1.47706 * 119.99832 * 179.97438 * 17 16 13 20 20 N 1.31809 * 126.52538 * 0.02698 * 19 17 16 21 21 N 1.28466 * 110.07776 * 179.97438 * 20 19 17 22 22 H 0.97001 * 124.88210 * 179.97438 * 21 20 19 23 23 C 1.35032 * 110.22744 * 0.23353 * 21 20 19 24 24 C 1.35363 * 107.23257 * 359.62253 * 23 21 20 25 25 C 1.50703 * 127.24873 * 180.09565 * 24 23 21 26 26 F 1.39899 * 109.47214 * 0.31196 * 25 24 23 27 27 F 1.39903 * 109.47085 * 120.31374 * 25 24 23 28 28 F 1.39904 * 109.46833 * 240.31189 * 25 24 23 29 29 H 1.08995 * 109.47284 * 59.99778 * 1 2 3 30 30 H 1.08997 * 109.46663 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47057 * 299.99631 * 1 2 3 32 32 H 0.96994 * 119.99978 * 94.99659 * 4 2 1 33 33 H 0.96998 * 119.99942 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47555 * 299.99746 * 15 13 2 35 35 H 1.09005 * 109.47252 * 60.00390 * 15 13 2 36 36 H 1.08999 * 109.46819 * 179.97438 * 15 13 2 37 37 H 0.97003 * 120.00311 * 335.00606 * 16 13 2 38 38 H 1.08002 * 126.38063 * 179.73544 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6115 -0.6619 3.5093 8 7 2.9246 -1.9390 3.4501 9 14 2.7906 0.2701 5.1182 10 1 2.3766 1.6825 4.9207 11 1 1.9295 -0.3577 6.1524 12 1 4.2075 0.2263 5.5605 13 6 2.0400 -0.7211 -1.2493 14 1 3.1263 -0.6442 -1.2952 15 6 1.6353 -2.1954 -1.1880 16 7 1.4558 -0.1036 -2.4423 17 6 2.0912 -0.1936 -3.6276 18 8 3.1489 -0.7878 -3.7066 19 6 1.5019 0.4286 -4.8306 20 7 0.3686 1.0988 -4.8919 21 7 0.1589 1.5016 -6.0937 22 1 -0.6128 2.0148 -6.3800 23 6 1.1645 1.1028 -6.9018 24 6 2.0470 0.4190 -6.1364 25 6 3.3354 -0.2231 -6.5823 26 9 3.5149 -0.0058 -7.9527 27 9 4.4050 0.3389 -5.8770 28 9 3.2824 -1.5983 -6.3312 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6317 1.1526 33 1 3.2480 -2.3962 4.2421 34 1 2.0700 -2.6549 -0.3003 35 1 0.5490 -2.2724 -1.1421 36 1 1.9983 -2.7091 -2.0782 37 1 0.6118 0.3702 -2.3793 38 1 1.2498 1.2954 -7.9611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755237618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:49 Heat of formation + Delta-G solvation = -121.280275 kcal Electronic energy + Delta-G solvation = -27401.572163 eV Core-core repulsion = 22865.425768 eV Total energy + Delta-G solvation = -4536.146395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.00657 -48.56198 -48.47890 -43.99425 -40.83690 -38.42557 -35.64661 -33.86880 -33.53895 -32.46507 -30.82272 -29.80549 -27.19768 -26.21687 -25.92322 -24.30947 -22.48859 -21.47336 -20.74914 -20.11777 -19.43155 -19.37451 -19.10345 -18.40241 -17.77709 -17.07469 -16.85255 -16.59847 -15.96167 -15.85079 -15.39852 -15.35952 -15.29230 -15.11975 -14.92128 -14.79679 -14.67241 -14.64827 -14.33336 -13.93035 -13.50492 -13.46203 -13.09858 -12.98634 -12.81864 -12.65270 -12.27351 -12.06670 -12.04409 -11.67292 -11.60691 -11.32989 -10.95653 -10.84086 -10.68447 -10.14296 -9.02338 -7.92352 -5.21316 0.22377 0.60047 1.48669 1.50160 1.50395 1.59816 1.82035 2.11330 2.14483 2.59082 2.74013 3.03697 3.40555 3.41673 3.49795 3.78945 3.87021 3.97122 4.00276 4.07890 4.32208 4.38340 4.60026 4.62576 4.70390 4.87193 4.96523 5.01903 5.20546 5.25037 5.45072 5.55051 5.62920 5.85981 6.29757 6.34348 6.60320 7.07893 7.36431 8.10003 8.33821 9.31424 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.002911 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.432986 B = 9615.886474 C =10132.397681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.047 0.953 4 N -0.733 5.733 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.297 1.297 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.150 4.150 16 N -0.690 5.690 17 C 0.586 3.414 18 O -0.554 6.554 19 C 0.017 3.983 20 N -0.247 5.247 21 N -0.347 5.347 22 H 0.478 0.522 23 C 0.098 3.902 24 C -0.290 4.290 25 C 0.547 3.453 26 F -0.171 7.171 27 F -0.184 7.184 28 F -0.183 7.183 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.377 0.623 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.415 0.585 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 9.125 -27.761 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.066 0.934 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.224 1.224 13 C 0.044 3.956 14 H 0.081 0.919 15 C -0.208 4.208 16 N -0.343 5.343 17 C 0.370 3.630 18 O -0.430 6.430 19 C -0.145 4.145 20 N -0.082 5.082 21 N -0.063 5.063 22 H 0.330 0.670 23 C -0.050 4.050 24 C -0.303 4.303 25 C 0.492 3.508 26 F -0.152 7.152 27 F -0.166 7.166 28 F -0.165 7.165 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.211 0.789 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.254 0.746 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.662 9.211 -26.996 30.116 hybrid contribution 0.710 -0.223 0.630 0.975 sum -8.952 8.988 -26.367 29.259 Atomic orbital electron populations 1.22353 0.96580 1.01693 1.01114 1.20509 0.93909 0.94873 0.84974 0.93446 1.42648 1.78625 1.10555 1.05741 1.19655 1.34931 0.94309 0.88023 0.90402 1.25540 1.02906 0.96889 1.01444 1.69825 1.52587 1.10227 1.29362 0.85088 0.76625 0.78258 0.79871 1.18917 1.22109 1.22422 1.20995 0.97652 0.93252 0.83744 0.91894 1.22033 1.02358 0.95091 1.01322 1.45834 1.25958 1.55715 1.06821 1.17262 0.83827 0.79465 0.82441 1.90855 1.23049 1.43722 1.85392 1.21499 0.94775 1.04310 0.93940 1.73626 1.16211 1.13349 1.05051 1.43466 1.20378 1.38931 1.03520 0.67037 1.23324 0.86470 0.94897 1.00281 1.20343 1.00149 1.14360 0.95420 1.17160 0.83338 0.76017 0.74331 1.93171 1.96054 1.94569 1.31391 1.93208 1.59231 1.85006 1.79124 1.93206 1.96589 1.32673 1.94005 0.90868 0.92848 0.93593 0.78888 0.94081 0.92549 0.90864 0.92907 0.74575 0.73319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.01 71.98 0.65 -4.46 16 2 C 0.17 6.47 2.93 44.99 0.13 6.60 16 3 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 4 N -0.73 -36.68 5.03 -322.93 -1.63 -38.31 16 5 C -0.24 -13.08 9.93 84.03 0.83 -12.25 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 8 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 9 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 13 C 0.15 5.34 2.62 44.99 0.12 5.46 16 14 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16 15 C -0.15 -5.27 9.00 71.98 0.65 -4.62 16 16 N -0.69 -20.26 4.99 -445.54 -2.22 -22.48 16 17 C 0.59 18.51 7.79 86.74 0.68 19.19 16 18 O -0.55 -21.65 14.14 -3.93 -0.06 -21.71 16 19 C 0.02 0.40 7.13 42.46 0.30 0.70 16 20 N -0.25 -4.11 11.92 -48.18 -0.57 -4.69 16 21 N -0.35 -2.29 6.83 -57.51 -0.39 -2.68 16 22 H 0.48 -1.49 8.96 -219.99 -1.97 -3.47 16 23 C 0.10 0.75 11.48 83.54 0.96 1.71 16 24 C -0.29 -5.72 5.66 -19.72 -0.11 -5.84 16 25 C 0.55 13.29 2.85 71.24 0.20 13.49 16 26 F -0.17 -3.14 16.87 44.97 0.76 -2.38 16 27 F -0.18 -5.53 16.41 44.97 0.74 -4.79 16 28 F -0.18 -5.40 16.42 44.97 0.74 -4.67 16 29 H 0.07 1.78 6.29 -2.39 -0.02 1.77 16 30 H 0.05 1.74 6.57 -2.39 -0.02 1.73 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.38 20.23 5.77 -92.71 -0.54 19.70 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.06 2.24 6.29 -2.39 -0.02 2.23 16 35 H 0.07 2.30 6.57 -2.38 -0.02 2.28 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.42 10.08 6.30 -92.71 -0.58 9.50 16 38 H 0.25 -0.71 8.02 -2.91 -0.02 -0.74 16 Total: -1.00 -78.01 333.30 2.63 -75.39 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -1.92 Total: 21.24 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 4.88 Total: 16.11 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -4.53 Total: -127.55 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 9 Polarization: -14.07 SS G_CDS: 2.24 Total: -11.83 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -78.01 2.63 -75.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755237618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.895 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds