Wall clock time and date at job start Tue Mar 31 2020 12:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47498 * 2 1 4 4 N 1.46504 * 109.46931 * 239.99867 * 2 1 3 5 5 C 1.36934 * 120.00137 * 85.00099 * 4 2 1 6 6 H 1.07999 * 119.99805 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00081 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00032 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47043 * 60.00249 * 9 7 5 11 11 H 1.48507 * 109.47183 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47034 * 300.00041 * 9 7 5 13 13 C 1.52999 * 109.46876 * 120.00334 * 2 1 3 14 14 H 1.09001 * 109.47336 * 185.00139 * 13 2 1 15 15 C 1.52993 * 109.47538 * 64.99800 * 13 2 1 16 16 N 1.46501 * 109.47067 * 304.99298 * 13 2 1 17 17 C 1.34772 * 120.00513 * 205.00306 * 16 13 2 18 18 O 1.21595 * 119.99880 * 0.02562 * 17 16 13 19 19 C 1.47572 * 120.00304 * 180.02562 * 17 16 13 20 20 C 1.39398 * 120.16991 * 359.97438 * 19 17 16 21 21 C 1.38468 * 120.49119 * 180.02562 * 20 19 17 22 22 F 1.35095 * 119.79286 * 180.02562 * 21 20 19 23 23 C 1.38185 * 120.42325 * 359.97438 * 21 20 19 24 24 C 1.39372 * 119.91544 * 359.97438 * 23 21 20 25 25 C 1.46851 * 134.26705 * 180.02562 * 24 23 21 26 26 C 1.33972 * 106.14881 * 180.02562 * 25 24 23 27 27 O 1.34456 * 110.13030 * 0.02562 * 26 25 24 28 28 C 1.34615 * 110.92400 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47498 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47396 * 300.00142 * 1 2 3 31 31 H 1.09004 * 109.47257 * 59.99871 * 1 2 3 32 32 H 0.97009 * 119.99814 * 264.99849 * 4 2 1 33 33 H 0.97002 * 119.99938 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46808 * 299.99767 * 15 13 2 35 35 H 1.08992 * 109.47401 * 60.00049 * 15 13 2 36 36 H 1.09003 * 109.47039 * 180.02562 * 15 13 2 37 37 H 0.97002 * 119.99522 * 25.00308 * 16 13 2 38 38 H 1.08002 * 119.75373 * 359.97438 * 20 19 17 39 39 H 1.08000 * 120.04920 * 179.72078 * 23 21 20 40 40 H 1.07996 * 126.92162 * 359.97050 * 25 24 23 41 41 H 1.08007 * 124.93254 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1490 -0.0076 -2.3758 6 1 1.8918 1.0402 -2.4244 7 6 2.6122 -0.6618 -3.5090 8 7 2.9252 -1.9390 -3.4498 9 14 2.7913 0.2701 -5.1179 10 1 3.7465 1.3925 -4.9362 11 1 3.3001 -0.6484 -6.1681 12 1 1.4691 0.8070 -5.5288 13 6 2.0399 -0.7213 1.2492 14 1 3.1262 -0.6444 1.2952 15 6 1.6351 -2.1955 1.1880 16 7 1.4558 -0.1037 2.4424 17 6 2.0911 -0.1938 3.6275 18 8 3.1494 -0.7873 3.7064 19 6 1.5025 0.4280 4.8295 20 6 0.2897 1.1098 4.7430 21 6 -0.2684 1.6961 5.8665 22 9 -1.4446 2.3530 5.7666 23 6 0.3696 1.6126 7.0894 24 6 1.5824 0.9342 7.1958 25 6 2.5078 0.6561 8.3016 26 6 3.5162 -0.0512 7.7748 27 8 3.3118 -0.2391 6.4592 28 6 2.1603 0.3358 6.0646 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6319 -1.1526 33 1 3.2485 -2.3963 -4.2419 34 1 0.5488 -2.2723 1.1421 35 1 2.0697 -2.6550 0.3003 36 1 1.9981 -2.7092 2.0782 37 1 0.6118 0.3702 2.3793 38 1 -0.2180 1.1819 3.7925 39 1 -0.0688 2.0760 7.9608 40 1 2.3979 0.9612 9.3318 41 1 4.3698 -0.4165 8.3265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755241589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:20 Heat of formation + Delta-G solvation = -31.418630 kcal Electronic energy + Delta-G solvation = -26319.873641 eV Core-core repulsion = 22309.560718 eV Total energy + Delta-G solvation = -4010.312923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.23748 -42.85085 -39.92837 -37.79086 -36.85130 -34.01554 -33.28977 -31.85630 -30.65051 -29.81474 -29.07529 -28.22674 -25.05043 -24.34473 -23.24887 -22.81918 -22.02573 -20.53113 -19.34383 -18.38657 -18.05174 -17.55376 -17.24959 -16.57251 -16.48259 -15.78520 -15.57311 -15.26095 -14.94810 -14.58703 -14.36892 -14.23518 -13.70823 -13.56861 -13.39231 -13.24834 -12.95064 -12.77386 -12.49941 -12.15895 -11.95808 -11.85105 -11.64078 -11.31704 -10.94983 -10.82798 -10.64495 -10.47923 -10.29497 -10.02403 -9.91934 -9.65335 -8.96086 -8.92458 -8.90075 -8.67315 -7.01953 -5.79162 -3.08940 0.05575 0.73284 1.82463 2.40888 2.66261 3.09557 3.40718 3.43303 3.47908 3.48736 3.63186 4.02771 4.14587 4.44350 4.57419 4.65922 4.75604 4.86492 5.07463 5.18732 5.33545 5.40468 5.45807 5.52387 5.60999 5.62866 5.65806 5.80811 5.89162 6.04637 6.12510 6.14269 6.26963 6.37790 6.43098 6.60500 6.69825 6.74237 6.87734 7.05562 7.57009 7.67316 8.24645 8.39301 9.50507 10.05405 10.40337 11.43323 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.002772 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.296445 B =10098.007610 C =10934.058075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.053 0.947 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.136 3.864 14 H 0.091 0.909 15 C -0.160 4.160 16 N -0.711 5.711 17 C 0.553 3.447 18 O -0.521 6.521 19 C -0.085 4.085 20 C -0.095 4.095 21 C 0.080 3.920 22 F -0.132 7.132 23 C -0.085 4.085 24 C -0.115 4.115 25 C -0.215 4.215 26 C 0.021 3.979 27 O -0.165 6.165 28 C 0.096 3.904 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.397 0.603 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 5.968 25.536 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.071 0.929 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.032 3.968 14 H 0.109 0.891 15 C -0.218 4.218 16 N -0.365 5.365 17 C 0.338 3.662 18 O -0.397 6.397 19 C -0.088 4.088 20 C -0.115 4.115 21 C 0.061 3.939 22 F -0.110 7.110 23 C -0.104 4.104 24 C -0.116 4.116 25 C -0.234 4.234 26 C -0.044 4.044 27 O -0.064 6.064 28 C 0.047 3.953 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.223 0.777 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.234 0.766 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.629 5.510 25.195 26.202 hybrid contribution -0.606 0.633 -0.742 1.148 sum -5.235 6.143 24.452 25.750 Atomic orbital electron populations 1.22552 0.99322 1.01351 0.99725 1.20362 0.92189 0.95645 0.86112 0.92946 1.42441 1.78230 1.10789 1.04766 1.19175 1.37046 0.93951 0.87145 0.91157 1.24744 1.01891 0.95994 0.98112 1.69649 1.50549 1.08650 1.29111 0.86255 0.77771 0.78614 0.83444 1.21234 1.21684 1.21273 1.21404 0.99189 0.92967 0.83281 0.89115 1.22145 1.01587 0.95640 1.02416 1.46180 1.25641 1.56423 1.08209 1.17893 0.84832 0.80551 0.82884 1.90850 1.21598 1.42110 1.85192 1.18795 0.95258 1.03551 0.91243 1.21120 0.94358 0.96970 0.99040 1.17112 0.84263 0.98573 0.93982 1.91542 1.44015 1.78680 1.96807 1.20536 0.93810 0.99009 0.97043 1.19659 0.96479 1.01967 0.93497 1.22463 0.95225 1.06204 0.99548 1.24233 1.00398 0.98751 0.81034 1.84230 1.35210 1.62480 1.24500 1.19308 0.86321 0.95927 0.93785 0.92685 0.95034 0.92241 0.77733 0.93360 0.92454 0.90330 0.93018 0.76634 0.82981 0.83679 0.81879 0.77061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.01 37.15 0.33 -2.45 16 2 C 0.17 3.19 2.93 -67.93 -0.20 2.99 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.72 -17.46 5.03 -53.43 -0.27 -17.73 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 9 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.14 2.34 2.62 -67.93 -0.18 2.17 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 C -0.16 -2.70 9.00 37.15 0.33 -2.37 16 16 N -0.71 -10.07 4.94 -54.84 -0.27 -10.34 16 17 C 0.55 8.52 7.73 -12.46 -0.10 8.43 16 18 O -0.52 -10.00 15.77 -5.43 -0.09 -10.08 16 19 C -0.08 -1.07 5.88 -104.91 -0.62 -1.69 16 20 C -0.10 -0.95 9.50 -39.06 -0.37 -1.33 16 21 C 0.08 0.76 7.28 -39.52 -0.29 0.47 16 22 F -0.13 -1.28 17.26 2.25 0.04 -1.24 16 23 C -0.08 -0.74 10.06 -39.18 -0.39 -1.13 16 24 C -0.11 -1.15 6.39 -105.17 -0.67 -1.82 16 25 C -0.22 -1.62 11.15 -37.60 -0.42 -2.04 16 26 C 0.02 0.17 11.96 29.23 0.35 0.52 16 27 O -0.17 -2.12 9.92 -6.28 -0.06 -2.18 16 28 C 0.10 1.22 6.99 -38.01 -0.27 0.95 16 29 H 0.05 0.92 6.57 -51.93 -0.34 0.57 16 30 H 0.03 0.39 6.29 -51.93 -0.33 0.07 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.39 9.93 5.77 -40.82 -0.24 9.70 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 0.89 6.57 -51.93 -0.34 0.55 16 35 H 0.08 1.48 6.29 -51.93 -0.33 1.15 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.53 4.59 -40.82 -0.19 4.34 16 38 H 0.15 1.20 6.37 -52.49 -0.33 0.87 16 39 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.21 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -33.46 347.47 -7.00 -40.46 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -4.57 Total: 10.21 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.73 Total: -4.43 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.18 Total: -55.15 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.15 Total: -12.26 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.46 -7.00 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755241589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.046 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds