Wall clock time and date at job start Tue Mar 31 2020 12:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21583 * 120.00144 * 0.02562 * 5 4 2 7 7 C 1.47572 * 119.99884 * 180.02562 * 5 4 2 8 8 C 1.39406 * 120.16832 * 359.72459 * 7 5 4 9 9 C 1.38470 * 120.48575 * 179.75325 * 8 7 5 10 10 F 1.35103 * 119.78656 * 180.26471 * 9 8 7 11 11 C 1.38188 * 120.42347 * 0.51157 * 9 8 7 12 12 C 1.39363 * 119.91624 * 359.74974 * 11 9 8 13 13 C 1.46853 * 134.26495 * 180.02562 * 12 11 9 14 14 C 1.33974 * 106.14966 * 180.02562 * 13 12 11 15 15 O 1.34464 * 110.12992 * 0.02562 * 14 13 12 16 16 C 1.34625 * 110.91963 * 359.97438 * 15 14 13 17 17 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 18 18 H 1.08995 * 109.47216 * 299.99814 * 17 2 1 19 19 C 1.52999 * 109.47083 * 179.97438 * 17 2 1 20 20 N 1.46498 * 109.47065 * 59.99703 * 17 2 1 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 17 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 17 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 17 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 H 1.08994 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 31 31 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 32 32 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 33 33 H 1.07998 * 119.75664 * 359.97438 * 8 7 5 34 34 H 1.07997 * 120.04141 * 179.78287 * 11 9 8 35 35 H 1.07992 * 126.92203 * 359.96047 * 13 12 11 36 36 H 1.07999 * 124.93212 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47054 * 59.99725 * 19 17 2 38 38 H 1.08996 * 109.47245 * 179.97438 * 19 17 2 39 39 H 1.08995 * 109.47098 * 300.00077 * 19 17 2 40 40 H 0.97001 * 120.00384 * 25.00562 * 20 17 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8576 1.1611 2.4118 7 6 2.6396 -0.7141 3.5618 8 6 2.9672 -2.0679 3.5043 9 6 3.4346 -2.7259 4.6294 10 9 3.7530 -4.0369 4.5565 11 6 3.5729 -2.0515 5.8276 12 6 3.2454 -0.6992 5.9059 13 6 3.2685 0.3005 6.9813 14 6 2.8318 1.4440 6.4367 15 8 2.5405 1.2561 5.1375 16 6 2.7737 -0.0184 4.7720 17 6 2.0399 -0.7211 -1.2494 18 1 1.6766 -1.7488 -1.2495 19 6 3.5699 -0.7206 -1.2498 20 7 1.5515 -0.0304 -2.4454 21 6 1.4261 -0.7121 -3.6265 22 1 1.6830 -1.7600 -3.6750 23 6 0.9687 -0.0563 -4.7612 24 7 0.6561 1.2210 -4.7020 25 14 0.7969 -0.9863 -6.3720 26 1 1.2091 -2.3991 -6.1743 27 1 -0.6181 -0.9421 -6.8207 28 1 1.6625 -0.3571 -7.4017 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2491 -1.6319 1.1523 33 1 2.8589 -2.6066 2.5746 34 1 3.9347 -2.5716 6.7022 35 1 3.5747 0.1450 8.0052 36 1 2.7279 2.3804 6.9647 37 1 3.9337 -1.2343 -0.3598 38 1 3.9332 -1.2347 -2.1396 39 1 3.9329 0.3071 -1.2499 40 1 1.3209 0.9108 -2.4018 41 1 0.3362 1.6792 -5.4948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755241590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:24 Heat of formation + Delta-G solvation = -56.904907 kcal Electronic energy + Delta-G solvation = -26306.531200 eV Core-core repulsion = 22295.113109 eV Total energy + Delta-G solvation = -4011.418091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.95879 -43.58669 -41.10300 -38.69884 -38.12994 -35.66674 -34.19929 -33.42607 -31.71798 -30.79408 -30.23786 -30.12244 -25.94759 -25.86596 -24.25155 -23.58093 -22.84321 -21.64447 -21.40138 -19.50061 -19.16416 -18.77081 -18.22957 -17.41702 -17.36364 -16.85938 -16.56572 -16.51524 -16.03999 -16.00763 -15.54321 -15.38362 -15.00944 -14.76594 -14.42487 -14.17769 -14.09476 -13.89675 -13.62375 -13.48772 -13.22293 -12.95634 -12.89825 -12.75178 -12.63813 -12.56012 -12.27635 -12.08782 -11.73562 -11.49250 -11.35492 -11.12027 -10.99086 -10.21944 -9.66239 -9.40413 -9.01215 -7.91318 -5.20414 -0.71888 -0.03500 1.14524 1.49920 1.50069 1.59917 1.75103 1.76633 1.92172 2.47244 2.59469 2.90747 3.24682 3.43089 3.45922 3.71900 3.80595 3.87818 4.00076 4.04897 4.18418 4.29453 4.31819 4.37075 4.58483 4.63948 4.66611 4.74401 4.82505 4.86832 4.93265 4.96851 5.04242 5.14480 5.30121 5.36577 5.44666 5.46990 5.51357 5.57597 6.04784 6.29479 6.43492 7.10005 7.35981 8.08766 8.32221 9.32438 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.002764 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.247429 B =10129.190313 C =11046.393856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.150 3.850 3 H 0.061 0.939 4 N -0.696 5.696 5 C 0.556 3.444 6 O -0.568 6.568 7 C -0.110 4.110 8 C -0.083 4.083 9 C 0.073 3.927 10 F -0.131 7.131 11 C -0.067 4.067 12 C -0.124 4.124 13 C -0.205 4.205 14 C 0.009 3.991 15 O -0.202 6.202 16 C 0.067 3.933 17 C 0.168 3.832 18 H 0.065 0.935 19 C -0.156 4.156 20 N -0.730 5.730 21 C -0.230 4.230 22 H 0.082 0.918 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.970 3.030 26 H -0.263 1.263 27 H -0.297 1.297 28 H -0.298 1.298 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.413 0.587 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.200 0.800 36 H 0.249 0.751 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.372 0.628 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -8.303 27.959 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.045 3.955 3 H 0.079 0.921 4 N -0.348 5.348 5 C 0.344 3.656 6 O -0.448 6.448 7 C -0.113 4.113 8 C -0.102 4.102 9 C 0.054 3.946 10 F -0.110 7.110 11 C -0.086 4.086 12 C -0.125 4.125 13 C -0.224 4.224 14 C -0.054 4.054 15 O -0.102 6.102 16 C 0.017 3.983 17 C 0.059 3.941 18 H 0.083 0.917 19 C -0.216 4.216 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.100 0.900 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.187 1.187 27 H -0.224 1.224 28 H -0.226 1.226 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.252 0.748 33 H 0.191 0.809 34 H 0.194 0.806 35 H 0.217 0.783 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.204 0.796 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.811 -7.492 27.654 29.449 hybrid contribution -0.153 -0.199 -1.283 1.307 sum 6.658 -7.691 26.371 28.265 Atomic orbital electron populations 1.21933 0.94884 1.02358 1.01011 1.20970 0.94290 0.96440 0.83817 0.92086 1.45722 1.66206 1.14489 1.08415 1.18277 0.77630 0.86215 0.83514 1.90818 1.51565 1.17092 1.85313 1.18574 1.08599 0.93554 0.90619 1.21272 0.97286 0.91566 1.00085 1.17143 1.03873 0.79096 0.94503 1.91553 1.90729 1.31748 1.96924 1.20887 0.97660 0.92064 0.98012 1.19997 1.03797 0.95003 0.93688 1.22899 1.08318 0.90348 1.00804 1.25086 0.97997 1.02473 0.79891 1.84204 1.70509 1.27045 1.28470 1.19694 1.00045 0.83558 0.94974 1.20563 0.92942 0.95727 0.84826 0.91671 1.22323 0.97518 1.00598 1.01191 1.42484 1.78448 1.10323 1.05818 1.19626 1.34605 0.94278 0.87650 0.90035 1.25536 1.03184 0.96806 1.01413 1.69839 1.52877 1.10258 1.29199 0.85108 0.76548 0.78343 0.79969 1.18683 1.22419 1.22581 0.91431 0.93497 0.92691 0.74820 0.80930 0.80582 0.78342 0.73517 0.90863 0.93550 0.94945 0.79640 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.33 71.98 0.67 -4.38 16 2 C 0.15 5.17 2.21 44.99 0.10 5.27 16 3 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 4 N -0.70 -18.80 4.33 -445.67 -1.93 -20.73 16 5 C 0.56 17.05 7.73 86.71 0.67 17.72 16 6 O -0.57 -22.56 15.77 6.26 0.10 -22.46 16 7 C -0.11 -2.68 5.88 -20.05 -0.12 -2.80 16 8 C -0.08 -1.46 9.50 22.61 0.21 -1.25 16 9 C 0.07 1.18 7.28 22.31 0.16 1.34 16 10 F -0.13 -2.12 17.26 44.97 0.78 -1.34 16 11 C -0.07 -0.95 10.06 22.53 0.23 -0.73 16 12 C -0.12 -2.19 6.39 -20.22 -0.13 -2.32 16 13 C -0.21 -2.49 11.15 23.55 0.26 -2.23 16 14 C 0.01 0.13 11.96 66.85 0.80 0.93 16 15 O -0.20 -5.19 9.93 3.02 0.03 -5.16 16 16 C 0.07 1.65 6.99 23.28 0.16 1.82 16 17 C 0.17 6.23 2.52 44.99 0.11 6.34 16 18 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 19 C -0.16 -5.29 9.33 71.98 0.67 -4.62 16 20 N -0.73 -35.59 4.43 -322.94 -1.43 -37.02 16 21 C -0.23 -12.27 9.93 84.03 0.83 -11.43 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 24 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 25 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 26 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 2.24 7.44 -2.39 -0.02 2.22 16 32 H 0.41 8.16 6.41 -92.71 -0.59 7.57 16 33 H 0.17 2.14 6.37 -2.91 -0.02 2.12 16 34 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.20 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.25 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.07 1.90 7.45 -2.39 -0.02 1.88 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.37 20.07 7.58 -92.71 -0.70 19.37 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -74.90 355.17 4.75 -70.14 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.21 Total: 28.24 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.11 Total: -0.24 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -3.08 Total: -116.85 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.13 Total: -27.62 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.90 4.75 -70.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755241590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.238 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds