Wall clock time and date at job start Tue Mar 31 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 5 5 C 1.36938 * 119.99589 * 275.00203 * 4 2 1 6 6 H 1.07999 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99408 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00325 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99550 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47349 * 59.99998 * 9 7 5 11 11 H 1.48505 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47093 * 299.99919 * 9 7 5 13 13 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 14 14 H 1.08994 * 109.47155 * 300.00035 * 13 2 1 15 15 C 1.52998 * 109.47211 * 179.97438 * 13 2 1 16 16 N 1.46496 * 109.46776 * 59.99983 * 13 2 1 17 17 C 1.34777 * 119.99867 * 204.99688 * 16 13 2 18 18 O 1.21588 * 120.00208 * 0.02562 * 17 16 13 19 19 C 1.47576 * 120.00051 * 180.02562 * 17 16 13 20 20 C 1.39408 * 120.16928 * 359.72453 * 19 17 16 21 21 C 1.38466 * 120.48614 * 179.75462 * 20 19 17 22 22 F 1.35106 * 119.78759 * 180.26674 * 21 20 19 23 23 C 1.38185 * 120.42620 * 0.50477 * 21 20 19 24 24 C 1.39374 * 119.91164 * 359.76090 * 23 21 20 25 25 C 1.46842 * 134.26094 * 179.97438 * 24 23 21 26 26 C 1.33975 * 106.15299 * 180.02562 * 25 24 23 27 27 O 1.34466 * 110.12212 * 359.97438 * 26 25 24 28 28 C 1.34614 * 110.92356 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 31 31 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 32 32 H 0.96995 * 120.00050 * 94.72411 * 4 2 1 33 33 H 0.97000 * 119.99693 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47207 * 180.02562 * 15 13 2 35 35 H 1.09002 * 109.46901 * 300.00359 * 15 13 2 36 36 H 1.09002 * 109.47080 * 59.99700 * 15 13 2 37 37 H 0.96999 * 120.00085 * 25.00294 * 16 13 2 38 38 H 1.07998 * 119.74931 * 359.97438 * 20 19 17 39 39 H 1.07997 * 120.04609 * 179.77829 * 23 21 20 40 40 H 1.08005 * 126.92437 * 359.96835 * 25 24 23 41 41 H 1.07998 * 124.94076 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6622 3.5092 8 7 2.9244 -1.9392 3.4501 9 14 2.7904 0.2699 5.1182 10 1 1.4684 0.8076 5.5285 11 1 3.2993 -0.6486 6.1683 12 1 3.7464 1.3916 4.9367 13 6 2.0400 -0.7213 -1.2493 14 1 1.6767 -1.7489 -1.2493 15 6 3.5700 -0.7207 -1.2496 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7029 -3.6064 18 8 1.7118 -1.8827 -3.6610 19 6 0.9316 -0.0071 -4.8114 20 6 0.5940 1.3442 -4.7515 21 6 0.1371 2.0048 -5.8794 22 9 -0.1810 3.3159 -5.8066 23 6 -0.0004 1.3306 -7.0777 24 6 0.3270 -0.0219 -7.1558 25 6 0.3045 -1.0214 -8.2313 26 6 0.7395 -2.1653 -7.6862 27 8 1.0291 -1.9777 -6.3866 28 6 0.7965 -0.7031 -6.0214 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2453 -1.6328 1.1535 33 1 3.2471 -2.3966 4.2423 34 1 3.9333 -1.2341 -2.1398 35 1 3.9329 0.3071 -1.2498 36 1 3.9337 -1.2342 -0.3596 37 1 1.3210 0.9105 -2.4018 38 1 0.6930 1.8804 -3.8193 39 1 -0.3607 1.8510 -7.9527 40 1 -0.0020 -0.8659 -9.2552 41 1 0.8433 -3.1018 -8.2141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755241591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:34 Heat of formation + Delta-G solvation = -35.810406 kcal Electronic energy + Delta-G solvation = -26305.875439 eV Core-core repulsion = 22295.372074 eV Total energy + Delta-G solvation = -4010.503365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.23394 -42.85059 -39.90020 -37.76089 -36.69580 -34.03475 -33.29130 -31.81531 -30.68744 -29.84310 -29.17246 -28.38881 -24.92769 -23.99974 -23.02006 -22.80294 -21.88141 -20.43365 -20.06826 -18.33366 -18.12171 -17.50639 -17.22507 -16.57069 -16.47024 -15.78360 -15.60844 -15.29343 -14.84184 -14.66652 -14.34157 -13.74611 -13.59891 -13.54038 -13.31825 -13.26213 -13.06863 -12.89418 -12.44152 -12.16742 -11.88420 -11.82306 -11.69701 -11.19224 -10.96713 -10.83312 -10.70252 -10.62276 -10.25353 -9.98390 -9.88239 -9.66801 -9.05864 -8.91319 -8.85064 -8.66613 -7.00602 -5.78489 -3.08335 0.05661 0.73398 1.82432 2.40893 2.66391 3.08849 3.40928 3.42861 3.47630 3.48511 3.63257 4.02757 4.14660 4.44531 4.57373 4.66128 4.75709 4.86528 5.07059 5.18636 5.30372 5.40469 5.47980 5.52563 5.64906 5.66172 5.74116 5.88030 5.89382 6.09533 6.13504 6.18527 6.37496 6.40596 6.50115 6.59725 6.74207 6.80198 6.91687 7.01262 7.57349 7.66904 8.24629 8.39048 9.50419 10.05333 10.40495 11.43774 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.002764 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.220110 B =10127.965217 C =11045.110343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.717 5.717 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.136 3.864 14 H 0.088 0.912 15 C -0.153 4.153 16 N -0.709 5.709 17 C 0.554 3.446 18 O -0.521 6.521 19 C -0.085 4.085 20 C -0.095 4.095 21 C 0.080 3.920 22 F -0.132 7.132 23 C -0.085 4.085 24 C -0.115 4.115 25 C -0.215 4.215 26 C 0.021 3.979 27 O -0.166 6.166 28 C 0.096 3.904 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 5.663 -25.543 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.359 5.359 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.031 3.969 14 H 0.106 0.894 15 C -0.211 4.211 16 N -0.361 5.361 17 C 0.340 3.660 18 O -0.398 6.398 19 C -0.088 4.088 20 C -0.114 4.114 21 C 0.061 3.939 22 F -0.111 7.111 23 C -0.104 4.104 24 C -0.116 4.116 25 C -0.234 4.234 26 C -0.044 4.044 27 O -0.064 6.064 28 C 0.047 3.953 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.231 0.769 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.622 4.753 -25.185 26.239 hybrid contribution -0.159 0.989 0.734 1.242 sum -5.781 5.741 -24.451 25.772 Atomic orbital electron populations 1.22464 0.99032 1.01205 0.99860 1.20394 0.92122 0.95597 0.86091 0.93078 1.42279 1.78284 1.10599 1.04788 1.19139 1.37022 0.93845 0.87100 0.91193 1.24741 1.01985 0.95961 0.98048 1.69651 1.50531 1.08622 1.29054 0.86274 0.77752 0.78596 0.83563 1.21299 1.21711 1.21270 1.21414 0.94596 0.97681 0.83174 0.89425 1.22056 0.94698 1.01881 1.02468 1.46002 1.66548 1.13871 1.09648 1.17856 0.78692 0.86709 0.82769 1.90848 1.49450 1.14917 1.84556 1.18797 1.05803 0.92571 0.91677 1.21126 0.98727 0.92715 0.98880 1.17118 1.03568 0.79000 0.94264 1.91545 1.90709 1.31877 1.96925 1.20536 0.99901 0.92637 0.97333 1.19654 1.03994 0.94248 0.93718 1.22463 1.09444 0.91604 0.99928 1.24233 0.98347 1.00521 0.81326 1.84231 1.69702 1.26491 1.26011 1.19308 0.99036 0.82994 0.94011 0.93336 0.92547 0.94625 0.78009 0.93377 0.93378 0.92995 0.89933 0.76862 0.82909 0.83696 0.81885 0.77068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.33 37.16 0.35 -2.55 16 2 C 0.17 3.18 2.52 -67.92 -0.17 3.01 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 N -0.72 -17.27 4.42 -53.42 -0.24 -17.51 16 5 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 9 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.14 2.31 2.21 -67.93 -0.15 2.16 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 15 C -0.15 -2.65 9.33 37.16 0.35 -2.30 16 16 N -0.71 -9.86 4.33 -54.84 -0.24 -10.10 16 17 C 0.55 8.43 7.73 -12.45 -0.10 8.34 16 18 O -0.52 -9.91 15.77 -5.43 -0.09 -10.00 16 19 C -0.08 -1.06 5.88 -104.90 -0.62 -1.68 16 20 C -0.09 -0.94 9.50 -39.06 -0.37 -1.31 16 21 C 0.08 0.76 7.28 -39.52 -0.29 0.47 16 22 F -0.13 -1.27 17.26 2.25 0.04 -1.23 16 23 C -0.08 -0.74 10.06 -39.18 -0.39 -1.13 16 24 C -0.11 -1.15 6.39 -105.18 -0.67 -1.82 16 25 C -0.22 -1.62 11.14 -37.60 -0.42 -2.04 16 26 C 0.02 0.17 11.96 29.23 0.35 0.52 16 27 O -0.17 -2.11 9.92 -6.30 -0.06 -2.17 16 28 C 0.10 1.21 6.99 -38.02 -0.27 0.95 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.50 7.45 -51.93 -0.39 0.12 16 32 H 0.39 10.03 7.60 -40.82 -0.31 9.72 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.62 7.45 -51.93 -0.39 1.23 16 37 H 0.40 4.36 6.41 -40.82 -0.26 4.09 16 38 H 0.15 1.17 6.37 -52.49 -0.33 0.83 16 39 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -33.18 355.19 -7.17 -40.35 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.00 Total: 9.61 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.65 Total: -4.36 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.25 Total: -54.57 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.15 Total: -12.17 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.18 -7.17 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755241591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.543 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds