Wall clock time and date at job start Tue Mar 31 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47004 * 2 1 4 4 N 1.46495 * 109.47180 * 120.00689 * 2 1 3 5 5 C 1.36941 * 119.99769 * 274.99408 * 4 2 1 6 6 H 1.08006 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00075 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00114 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00088 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47003 * 60.00386 * 9 7 5 11 11 H 1.48501 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47194 * 300.00230 * 9 7 5 13 13 C 1.53002 * 109.46724 * 240.00473 * 2 1 3 14 14 H 1.09008 * 109.47020 * 299.99850 * 13 2 1 15 15 C 1.52994 * 109.47191 * 179.97438 * 13 2 1 16 16 N 1.46495 * 109.47308 * 59.99626 * 13 2 1 17 17 C 1.34781 * 120.00247 * 205.00050 * 16 13 2 18 18 O 1.21621 * 119.99751 * 0.02562 * 17 16 13 19 19 C 1.47276 * 119.99999 * 180.02562 * 17 16 13 20 20 C 1.39467 * 120.33819 * 0.02562 * 19 17 16 21 21 C 1.38113 * 120.11121 * 180.02562 * 20 19 17 22 22 C 1.38407 * 120.86989 * 359.97438 * 21 20 19 23 23 F 1.35101 * 119.87331 * 179.97438 * 22 21 20 24 24 C 1.39125 * 120.25457 * 0.02562 * 22 21 20 25 25 O 1.34906 * 133.31871 * 179.97438 * 24 22 21 26 26 C 1.34317 * 110.83510 * 179.97438 * 25 24 22 27 27 C 1.34290 * 110.06379 * 0.26560 * 26 25 24 28 28 C 1.40307 * 119.39910 * 359.97438 * 24 22 21 29 29 H 1.09003 * 109.47332 * 59.99487 * 1 2 3 30 30 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46326 * 299.99746 * 1 2 3 32 32 H 0.96996 * 120.00535 * 94.99630 * 4 2 1 33 33 H 0.97000 * 119.99777 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47072 * 59.99913 * 15 13 2 35 35 H 1.09000 * 109.47606 * 179.97438 * 15 13 2 36 36 H 1.08997 * 109.47474 * 299.99998 * 15 13 2 37 37 H 0.97005 * 119.99824 * 25.00318 * 16 13 2 38 38 H 1.07997 * 119.94398 * 359.97438 * 20 19 17 39 39 H 1.08006 * 119.56752 * 179.97438 * 21 20 19 40 40 H 1.08002 * 124.96521 * 179.97438 * 26 25 24 41 41 H 1.07999 * 126.90086 * 179.73951 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1493 -0.0076 2.3757 6 1 1.8921 1.0402 2.4243 7 6 2.6125 -0.6619 3.5089 8 7 2.9264 -1.9388 3.4495 9 14 2.7903 0.2697 5.1182 10 1 1.4676 0.8054 5.5288 11 1 3.3006 -0.6485 6.1679 12 1 3.7448 1.3928 4.9371 13 6 2.0400 -0.7212 -1.2494 14 1 1.6766 -1.7489 -1.2494 15 6 3.5699 -0.7207 -1.2498 16 7 1.5516 -0.0306 -2.4454 17 6 1.4227 -0.7028 -3.6065 18 8 1.7115 -1.8830 -3.6610 19 6 0.9322 -0.0084 -4.8090 20 6 0.5995 1.3450 -4.7545 21 6 0.1395 1.9915 -5.8849 22 6 0.0016 1.3139 -7.0839 23 9 -0.4508 1.9661 -8.1772 24 6 0.3260 -0.0364 -7.1674 25 8 0.2947 -0.9354 -8.1728 26 6 0.7140 -2.1394 -7.7502 27 6 1.0334 -2.0848 -6.4470 28 6 0.7944 -0.7040 -6.0257 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 2.2491 -1.6319 1.1525 33 1 3.2504 -2.3959 4.2413 34 1 3.9337 -1.2343 -0.3598 35 1 3.9332 -1.2348 -2.1396 36 1 3.9330 0.3070 -1.2500 37 1 1.3209 0.9107 -2.4018 38 1 0.7010 1.8881 -3.8266 39 1 -0.1160 3.0396 -5.8327 40 1 0.7797 -3.0235 -8.3671 41 1 1.3960 -2.8964 -5.8337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755268731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:11 Heat of formation + Delta-G solvation = -36.738687 kcal Electronic energy + Delta-G solvation = -26235.416636 eV Core-core repulsion = 22224.873017 eV Total energy + Delta-G solvation = -4010.543618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.34402 -42.80863 -39.98443 -37.81959 -36.67833 -34.05662 -32.87989 -32.04453 -30.79042 -29.98973 -29.08299 -28.39641 -24.58221 -24.02019 -23.26573 -22.79880 -21.92990 -20.44867 -20.06012 -18.35154 -18.03366 -17.48786 -17.29494 -16.85102 -16.58890 -15.73473 -15.52704 -15.30067 -14.93032 -14.63944 -14.26496 -13.70706 -13.53922 -13.42785 -13.36922 -13.17587 -13.07160 -12.69348 -12.45677 -12.27464 -12.10001 -11.85258 -11.71104 -11.21042 -10.98327 -10.85014 -10.71460 -10.39211 -10.27134 -9.97549 -9.89276 -9.67881 -9.17330 -9.06777 -8.84773 -8.48841 -7.02483 -5.80393 -3.10309 0.04375 0.72781 1.99164 2.26052 2.55963 3.12952 3.41277 3.46132 3.47095 3.49683 3.64378 4.07871 4.29718 4.47627 4.51344 4.57926 4.75879 4.99604 5.17269 5.28830 5.37345 5.46034 5.53074 5.58092 5.64184 5.71280 5.73473 5.86138 6.02623 6.07125 6.10797 6.17395 6.35605 6.38661 6.48230 6.57916 6.68202 6.77889 6.90012 6.99339 7.58613 7.64919 8.25643 8.37236 9.48545 10.03444 10.38407 11.41854 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.002568 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.254167 B =10902.612821 C =11578.117352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.718 5.718 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.136 3.864 14 H 0.087 0.913 15 C -0.153 4.153 16 N -0.709 5.709 17 C 0.557 3.443 18 O -0.531 6.531 19 C -0.092 4.092 20 C -0.072 4.072 21 C -0.136 4.136 22 C 0.137 3.863 23 F -0.129 7.129 24 C 0.005 3.995 25 O -0.186 6.186 26 C 0.010 3.990 27 C -0.188 4.188 28 C -0.052 4.052 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.396 0.604 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.216 0.784 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.313 5.684 -23.017 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.031 3.969 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.361 5.361 17 C 0.344 3.656 18 O -0.408 6.408 19 C -0.096 4.096 20 C -0.091 4.091 21 C -0.155 4.155 22 C 0.117 3.883 23 F -0.108 7.108 24 C -0.043 4.043 25 O -0.087 6.087 26 C -0.055 4.055 27 C -0.207 4.207 28 C -0.054 4.054 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.231 0.769 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.232 0.768 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.173 5.028 -23.167 24.264 hybrid contribution -0.033 0.655 0.858 1.080 sum -5.206 5.682 -22.309 23.602 Atomic orbital electron populations 1.22462 0.99035 1.01190 0.99837 1.20391 0.92123 0.95574 0.86108 0.93137 1.42277 1.78213 1.10690 1.04785 1.19136 1.37033 0.93857 0.87113 0.91200 1.24739 1.01966 0.95963 0.98052 1.69652 1.50463 1.08645 1.29097 0.86275 0.77753 0.78598 0.83563 1.21293 1.21705 1.21267 1.21398 0.94536 0.97669 0.83259 0.89474 1.22053 0.94751 1.01848 1.02433 1.46010 1.66486 1.13875 1.09695 1.17850 0.78338 0.86661 0.82779 1.90770 1.49987 1.15269 1.84789 1.19561 1.03294 0.93699 0.93042 1.21144 0.96536 0.92791 0.98632 1.20828 1.03245 1.01382 0.90052 1.16680 1.01554 0.85391 0.84648 1.91539 1.86424 1.80751 1.52042 1.19408 1.06213 0.90855 0.87849 1.84069 1.70877 1.18030 1.35729 1.24281 0.98841 0.86565 0.95782 1.22808 1.06661 0.96186 0.95037 1.19593 0.99666 0.94118 0.92015 0.94614 0.93363 0.92580 0.78018 0.93369 0.90000 0.93393 0.93025 0.76867 0.83546 0.82692 0.76800 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.33 37.16 0.35 -2.45 16 2 C 0.17 3.09 2.52 -67.93 -0.17 2.92 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -16.97 4.43 -53.42 -0.24 -17.21 16 5 C -0.24 -6.36 9.93 -15.06 -0.15 -6.50 16 6 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 9 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.14 2.23 2.21 -67.93 -0.15 2.08 16 14 H 0.09 1.62 7.58 -51.92 -0.39 1.23 16 15 C -0.15 -2.56 9.33 37.15 0.35 -2.21 16 16 N -0.71 -9.28 4.33 -54.93 -0.24 -9.52 16 17 C 0.56 7.93 7.72 -12.58 -0.10 7.83 16 18 O -0.53 -9.24 14.80 5.26 0.08 -9.17 16 19 C -0.09 -1.09 5.89 -104.79 -0.62 -1.71 16 20 C -0.07 -0.62 9.53 -39.17 -0.37 -0.99 16 21 C -0.14 -1.08 9.97 -39.57 -0.39 -1.48 16 22 C 0.14 1.40 7.31 -39.19 -0.29 1.11 16 23 F -0.13 -1.36 17.26 2.25 0.04 -1.32 16 24 C 0.00 0.06 7.38 -38.48 -0.28 -0.23 16 25 O -0.19 -2.04 10.58 3.99 0.04 -1.99 16 26 C 0.01 0.09 11.97 29.34 0.35 0.44 16 27 C -0.19 -2.10 10.29 -37.72 -0.39 -2.48 16 28 C -0.05 -0.64 6.15 -104.89 -0.65 -1.28 16 29 H 0.03 0.48 7.45 -51.93 -0.39 0.10 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.39 9.87 7.58 -40.82 -0.31 9.56 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.08 1.57 7.45 -51.93 -0.39 1.18 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.40 4.01 6.42 -40.82 -0.26 3.75 16 38 H 0.15 0.86 6.40 -52.49 -0.34 0.52 16 39 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.17 1.99 7.23 -52.49 -0.38 1.62 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -32.36 353.39 -6.85 -39.21 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.96 Total: 9.94 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.61 Total: -5.37 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.25 Total: -53.41 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.12 Total: -11.16 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.36 -6.85 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755268731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.471 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds