Wall clock time and date at job start Tue Mar 31 2020 12:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47004 * 2 1 4 4 N 1.46495 * 109.47180 * 120.00689 * 2 1 3 5 5 C 1.36941 * 119.99769 * 274.99408 * 4 2 1 6 6 H 1.08006 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00075 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00114 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00088 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47003 * 60.00386 * 9 7 5 11 11 H 1.48501 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47194 * 300.00230 * 9 7 5 13 13 C 1.53002 * 109.46724 * 240.00473 * 2 1 3 14 14 H 1.09008 * 109.47020 * 299.99850 * 13 2 1 15 15 C 1.52994 * 109.47191 * 179.97438 * 13 2 1 16 16 N 1.46495 * 109.47308 * 59.99626 * 13 2 1 17 17 C 1.34781 * 120.00247 * 205.00050 * 16 13 2 18 18 O 1.21621 * 119.99751 * 0.02562 * 17 16 13 19 19 C 1.47276 * 119.99999 * 180.02562 * 17 16 13 20 20 C 1.39467 * 120.33819 * 0.02562 * 19 17 16 21 21 C 1.38113 * 120.11121 * 180.02562 * 20 19 17 22 22 C 1.38407 * 120.86989 * 359.97438 * 21 20 19 23 23 F 1.35101 * 119.87331 * 179.97438 * 22 21 20 24 24 C 1.39125 * 120.25457 * 0.02562 * 22 21 20 25 25 O 1.34906 * 133.31871 * 179.97438 * 24 22 21 26 26 C 1.34317 * 110.83510 * 179.97438 * 25 24 22 27 27 C 1.34290 * 110.06379 * 0.26560 * 26 25 24 28 28 C 1.40307 * 119.39910 * 359.97438 * 24 22 21 29 29 H 1.09003 * 109.47332 * 59.99487 * 1 2 3 30 30 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46326 * 299.99746 * 1 2 3 32 32 H 0.96996 * 120.00535 * 94.99630 * 4 2 1 33 33 H 0.97000 * 119.99777 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47072 * 59.99913 * 15 13 2 35 35 H 1.09000 * 109.47606 * 179.97438 * 15 13 2 36 36 H 1.08997 * 109.47474 * 299.99998 * 15 13 2 37 37 H 0.97005 * 119.99824 * 25.00318 * 16 13 2 38 38 H 1.07997 * 119.94398 * 359.97438 * 20 19 17 39 39 H 1.08006 * 119.56752 * 179.97438 * 21 20 19 40 40 H 1.08002 * 124.96521 * 179.97438 * 26 25 24 41 41 H 1.07999 * 126.90086 * 179.73951 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1493 -0.0076 2.3757 6 1 1.8921 1.0402 2.4243 7 6 2.6125 -0.6619 3.5089 8 7 2.9264 -1.9388 3.4495 9 14 2.7903 0.2697 5.1182 10 1 1.4676 0.8054 5.5288 11 1 3.3006 -0.6485 6.1679 12 1 3.7448 1.3928 4.9371 13 6 2.0400 -0.7212 -1.2494 14 1 1.6766 -1.7489 -1.2494 15 6 3.5699 -0.7207 -1.2498 16 7 1.5516 -0.0306 -2.4454 17 6 1.4227 -0.7028 -3.6065 18 8 1.7115 -1.8830 -3.6610 19 6 0.9322 -0.0084 -4.8090 20 6 0.5995 1.3450 -4.7545 21 6 0.1395 1.9915 -5.8849 22 6 0.0016 1.3139 -7.0839 23 9 -0.4508 1.9661 -8.1772 24 6 0.3260 -0.0364 -7.1674 25 8 0.2947 -0.9354 -8.1728 26 6 0.7140 -2.1394 -7.7502 27 6 1.0334 -2.0848 -6.4470 28 6 0.7944 -0.7040 -6.0257 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 2.2491 -1.6319 1.1525 33 1 3.2504 -2.3959 4.2413 34 1 3.9337 -1.2343 -0.3598 35 1 3.9332 -1.2348 -2.1396 36 1 3.9330 0.3070 -1.2500 37 1 1.3209 0.9107 -2.4018 38 1 0.7010 1.8881 -3.8266 39 1 -0.1160 3.0396 -5.8327 40 1 0.7797 -3.0235 -8.3671 41 1 1.3960 -2.8964 -5.8337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755268731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:09 Heat of formation + Delta-G solvation = -57.473835 kcal Electronic energy + Delta-G solvation = -26236.315779 eV Core-core repulsion = 22224.873017 eV Total energy + Delta-G solvation = -4011.442762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -50.12537 -43.58173 -41.10018 -38.77320 -38.02921 -35.63956 -33.69851 -33.62844 -31.99175 -30.81409 -30.22910 -30.08471 -25.89387 -25.51539 -24.36383 -23.63922 -22.98496 -21.60558 -21.39546 -19.44725 -19.03612 -18.88372 -18.25792 -17.64444 -17.44988 -17.00550 -16.50686 -16.30966 -16.09121 -16.01558 -15.52339 -15.33453 -14.89215 -14.69796 -14.25932 -14.23849 -14.08695 -13.88427 -13.53164 -13.42432 -13.21641 -12.99522 -12.89960 -12.82637 -12.68672 -12.55198 -12.23646 -12.18920 -11.71227 -11.44858 -11.17182 -11.03033 -10.93997 -10.16571 -9.90909 -9.28624 -8.98924 -7.89599 -5.18445 -0.75822 -0.00365 1.24073 1.50920 1.53232 1.55686 1.59039 1.62163 2.00862 2.58342 2.61368 2.87758 3.39551 3.44679 3.56244 3.66155 3.70811 3.84170 4.05057 4.08194 4.22494 4.36067 4.38825 4.48216 4.60314 4.62105 4.77837 4.81725 4.87249 4.91307 4.97113 5.01361 5.08526 5.18607 5.30028 5.33793 5.39426 5.50696 5.54662 5.60445 5.91534 6.31146 6.53545 7.19359 7.37699 8.11503 8.34235 9.33783 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.002568 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.254167 B =10902.612821 C =11578.117352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.066 0.934 4 N -0.731 5.731 5 C -0.232 4.232 6 H 0.082 0.918 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.302 1.302 12 H -0.276 1.276 13 C 0.152 3.848 14 H 0.060 0.940 15 C -0.144 4.144 16 N -0.696 5.696 17 C 0.558 3.442 18 O -0.571 6.571 19 C -0.118 4.118 20 C -0.052 4.052 21 C -0.123 4.123 22 C 0.134 3.866 23 F -0.132 7.132 24 C -0.018 4.018 25 O -0.196 6.196 26 C 0.037 3.963 27 C -0.228 4.228 28 C -0.071 4.071 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.371 0.629 33 H 0.249 0.751 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.180 0.820 39 H 0.194 0.806 40 H 0.260 0.740 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 8.638 -24.329 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.084 0.916 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.100 0.900 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.800 3.200 10 H -0.205 1.205 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.046 3.954 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.348 5.348 17 C 0.347 3.653 18 O -0.451 6.451 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.142 4.142 22 C 0.114 3.886 23 F -0.110 7.110 24 C -0.065 4.065 25 O -0.097 6.097 26 C -0.027 4.027 27 C -0.246 4.246 28 C -0.073 4.073 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.203 0.797 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.253 0.747 38 H 0.198 0.802 39 H 0.211 0.789 40 H 0.275 0.725 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.187 8.065 -24.519 26.542 hybrid contribution 0.227 -0.231 1.104 1.151 sum -5.959 7.834 -23.415 25.400 Atomic orbital electron populations 1.22324 0.97498 1.00536 1.01232 1.20576 0.92945 0.95752 0.84817 0.91624 1.42474 1.78463 1.10237 1.05936 1.19562 1.34621 0.94311 0.87853 0.90016 1.25524 1.03164 0.96789 1.01409 1.69823 1.52675 1.10322 1.29388 0.85258 0.77913 0.77287 0.79567 1.20497 1.22851 1.20255 1.20933 0.94120 0.96441 0.83915 0.92145 1.21932 0.95047 1.02296 1.00918 1.45703 1.66235 1.14544 1.08338 1.18234 0.77442 0.86240 0.83425 1.90755 1.51730 1.17223 1.85416 1.19446 1.05847 0.95135 0.91746 1.21517 0.94105 0.91283 1.00148 1.21242 1.01509 1.02841 0.88565 1.17024 1.01238 0.85045 0.85332 1.91534 1.86431 1.80642 1.52400 1.19655 1.07460 0.91645 0.87776 1.84074 1.70998 1.18675 1.35940 1.25041 0.95616 0.86749 0.95310 1.22843 1.09378 0.96068 0.96359 1.19860 1.00027 0.94757 0.92647 0.90575 0.95092 0.93719 0.79686 0.94237 0.92946 0.93450 0.91483 0.74697 0.80235 0.78892 0.72467 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.33 71.98 0.67 -4.33 16 2 C 0.17 5.93 2.52 45.00 0.11 6.04 16 3 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 4 N -0.73 -34.74 4.43 -322.94 -1.43 -36.17 16 5 C -0.23 -12.14 9.93 84.03 0.83 -11.31 16 6 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 7 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 9 Si 0.97 44.95 29.55 68.60 2.03 46.97 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 13 C 0.15 4.90 2.21 44.99 0.10 5.00 16 14 H 0.06 2.32 7.58 -2.38 -0.02 2.30 16 15 C -0.14 -4.82 9.33 71.98 0.67 -4.14 16 16 N -0.70 -16.91 4.33 -445.94 -1.93 -18.84 16 17 C 0.56 15.53 7.72 86.62 0.67 16.20 16 18 O -0.57 -20.54 14.80 -4.10 -0.06 -20.60 16 19 C -0.12 -2.64 5.89 -19.97 -0.12 -2.75 16 20 C -0.05 -0.71 9.53 22.54 0.21 -0.49 16 21 C -0.12 -1.48 9.97 22.28 0.22 -1.26 16 22 C 0.13 2.42 7.31 22.52 0.16 2.58 16 23 F -0.13 -2.47 17.26 44.97 0.78 -1.70 16 24 C -0.02 -0.39 7.38 22.99 0.17 -0.22 16 25 O -0.20 -4.09 10.58 -8.63 -0.09 -4.18 16 26 C 0.04 0.60 11.97 66.92 0.80 1.40 16 27 C -0.23 -5.18 10.29 23.47 0.24 -4.94 16 28 C -0.07 -1.72 6.15 -20.04 -0.12 -1.85 16 29 H 0.08 1.81 7.45 -2.39 -0.02 1.79 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.37 19.65 7.58 -92.71 -0.70 18.94 16 33 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.05 2.07 7.45 -2.39 -0.02 2.05 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.41 6.84 6.42 -92.70 -0.60 6.25 16 38 H 0.18 1.14 6.40 -2.91 -0.02 1.12 16 39 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.26 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.16 4.00 7.23 -2.91 -0.02 3.98 16 Total: -1.00 -73.32 353.39 4.46 -68.86 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.21 Total: 27.96 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 5.10 Total: -3.87 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.08 Total: -113.44 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.15 Total: -24.78 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.70 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.32 4.46 -68.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755268731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.388 kcal (2) G-P(sol) polarization free energy of solvation -73.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds