Wall clock time and date at job start Tue Mar 31 2020 12:08:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86796 * 120.00145 * 2 1
4 4 H 1.48500 * 109.47397 * 269.99830 * 3 2 1
5 5 H 1.48497 * 109.47270 * 30.00121 * 3 2 1
6 6 H 1.48502 * 109.47205 * 150.00049 * 3 2 1
7 7 C 1.38803 * 119.99774 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00216 * 359.97438 * 7 2 1
9 9 S 1.76198 * 119.99788 * 180.02562 * 7 2 1
10 10 C 1.81006 * 99.99939 * 180.02562 * 9 7 2
11 11 C 1.50697 * 109.46897 * 179.97438 * 10 9 7
12 12 O 1.21278 * 120.00659 * 0.02562 * 11 10 9
13 13 N 1.34780 * 119.99676 * 179.97438 * 11 10 9
14 14 C 1.46498 * 120.00211 * 180.02562 * 13 11 10
15 15 C 1.52989 * 109.47615 * 180.02562 * 14 13 11
16 16 H 1.09001 * 110.64553 * 303.30172 * 15 14 13
17 17 C 1.54592 * 110.72658 * 66.44999 * 15 14 13
18 18 C 1.53997 * 105.14315 * 140.31946 * 17 15 14
19 19 N 1.47902 * 107.05497 * 1.22335 * 18 17 15
20 20 C 1.39672 * 111.00345 * 214.15474 * 19 18 17
21 21 C 1.38918 * 120.07035 * 59.87983 * 20 19 18
22 22 C 1.38103 * 119.92232 * 180.26003 * 21 20 19
23 23 C 1.38291 * 120.07426 * 359.43747 * 22 21 20
24 24 C 1.38281 * 120.14889 * 0.56232 * 23 22 21
25 25 C 1.38103 * 120.07737 * 359.72142 * 24 23 22
26 26 C 1.48535 * 105.82441 * 334.67472 * 19 18 17
27 27 H 0.96999 * 119.99741 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.46874 * 59.99743 * 10 9 7
29 29 H 1.09000 * 109.46383 * 299.99627 * 10 9 7
30 30 H 0.96999 * 119.99967 * 0.02562 * 13 11 10
31 31 H 1.09005 * 109.47271 * 59.99613 * 14 13 11
32 32 H 1.09002 * 109.46914 * 300.00454 * 14 13 11
33 33 H 1.09003 * 110.30784 * 21.40053 * 17 15 14
34 34 H 1.08997 * 110.39724 * 259.28095 * 17 15 14
35 35 H 1.08999 * 109.91551 * 241.87997 * 18 17 15
36 36 H 1.08996 * 109.91861 * 120.58278 * 18 17 15
37 37 H 1.08002 * 120.03585 * 359.97438 * 21 20 19
38 38 H 1.08004 * 119.95970 * 179.72372 * 22 21 20
39 39 H 1.07994 * 119.92283 * 180.28458 * 23 22 21
40 40 H 1.07998 * 119.96595 * 179.74375 * 24 23 22
41 41 H 1.08001 * 120.04036 * 179.97438 * 25 24 23
42 42 H 1.08996 * 110.66742 * 157.63885 * 26 19 18
43 43 H 1.08998 * 110.66120 * 280.77078 * 26 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0464 -1.4000
5 1 1.4479 2.6526 0.7000
6 1 3.5479 1.4401 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 1.4703 -2.1374 -0.0005
9 16 3.7723 -1.2021 0.0001
10 6 4.0865 -2.9847 -0.0017
11 6 5.5730 -3.2326 -0.0021
12 8 6.3440 -2.2965 -0.0007
13 7 6.0456 -4.4948 -0.0029
14 6 7.4906 -4.7360 -0.0026
15 6 7.7563 -6.2426 -0.0043
16 1 7.2712 -6.7194 0.8474
17 6 7.2829 -6.8802 -1.3307
18 6 8.3617 -7.9206 -1.6846
19 7 9.3669 -7.8892 -0.6001
20 6 10.6484 -8.1352 -1.0981
21 6 11.1958 -7.2931 -2.0577
22 6 12.4611 -7.5423 -2.5519
23 6 13.1875 -8.6220 -2.0841
24 6 12.6456 -9.4622 -1.1289
25 6 11.3786 -9.2222 -0.6346
26 6 9.2786 -6.5310 -0.0052
27 1 -0.4850 0.8401 -0.0004
28 1 3.6439 -3.4307 -0.8924
29 1 3.6433 -3.4326 0.8877
30 1 5.4289 -5.2436 -0.0036
31 1 7.9333 -4.2896 0.8878
32 1 7.9338 -4.2882 -0.8921
33 1 7.2168 -6.1230 -2.1120
34 1 6.3175 -7.3675 -1.1947
35 1 8.8310 -7.6608 -2.6334
36 1 7.9144 -8.9125 -1.7478
37 1 10.6307 -6.4471 -2.4203
38 1 12.8855 -6.8905 -3.3013
39 1 14.1786 -8.8119 -2.4689
40 1 13.2140 -10.3070 -0.7686
41 1 10.9558 -9.8791 0.1112
42 1 9.6709 -6.5302 1.0117
43 1 9.8072 -5.8053 -0.6233
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042059308.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:06
Heat of formation + Delta-G solvation = -5.943899 kcal
Electronic energy + Delta-G solvation = -23089.062858 eV
Core-core repulsion = 19646.067778 eV
Total energy + Delta-G solvation = -3442.995080 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.73028 -39.33954 -38.19422 -35.11377 -32.69212 -32.44065 -31.32001 -30.38257
-29.21189 -28.63146 -25.67300 -25.06722 -23.40172 -22.70134 -21.13989 -20.59640
-20.31134 -18.01982 -17.62997 -16.76984 -16.42463 -16.26942 -15.64877 -15.40457
-15.00533 -14.89236 -14.68937 -14.45932 -13.86377 -13.81350 -13.69274 -13.41268
-13.29813 -12.84546 -12.77552 -12.54740 -12.33609 -11.98279 -11.74268 -11.59706
-11.58626 -11.26773 -11.23586 -11.01308 -10.95925 -10.60691 -9.86369 -9.55175
-9.33109 -9.04685 -9.03439 -9.00499 -8.96344 -8.50737 -6.92482 -6.29419
-4.01201 0.86550 1.00665 2.74983 2.96467 3.25894 3.32631 3.34339
3.45708 3.50218 3.64956 4.24027 4.32391 4.33409 4.43709 4.54333
4.57942 4.72026 4.74315 4.82390 4.97665 5.03655 5.05659 5.09641
5.11682 5.23385 5.28756 5.35028 5.39615 5.47644 5.53493 5.61786
5.67489 5.73597 5.78431 5.89862 5.98328 6.00638 6.10336 6.12426
6.29860 6.41594 6.50281 7.00045 7.59175 7.93649 8.41125 8.47642
9.16771 10.79780
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.039422 B = 0.001924 C = 0.001879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 710.084421 B =14551.280615 C =14894.404273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.880 5.880
2 C 0.095 3.905
3 Si 0.857 3.143
4 H -0.267 1.267
5 H -0.274 1.274
6 H -0.235 1.235
7 C -0.522 4.522
8 H 0.088 0.912
9 S -0.142 6.142
10 C -0.124 4.124
11 C 0.530 3.470
12 O -0.520 6.520
13 N -0.735 5.735
14 C 0.131 3.869
15 C -0.102 4.102
16 H 0.094 0.906
17 C -0.130 4.130
18 C 0.040 3.960
19 N -0.484 5.484
20 C 0.082 3.918
21 C -0.150 4.150
22 C -0.111 4.111
23 C -0.125 4.125
24 C -0.115 4.115
25 C -0.095 4.095
26 C 0.048 3.952
27 H 0.271 0.729
28 H 0.097 0.903
29 H 0.097 0.903
30 H 0.400 0.600
31 H 0.069 0.931
32 H 0.066 0.934
33 H 0.075 0.925
34 H 0.078 0.922
35 H 0.051 0.949
36 H 0.083 0.917
37 H 0.121 0.879
38 H 0.122 0.878
39 H 0.122 0.878
40 H 0.125 0.875
41 H 0.129 0.871
42 H 0.089 0.911
43 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.601 -21.364 -3.117 31.987
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.517 5.517
2 C -0.113 4.113
3 Si 0.682 3.318
4 H -0.192 1.192
5 H -0.199 1.199
6 H -0.159 1.159
7 C -0.669 4.669
8 H 0.106 0.894
9 S 0.084 5.916
10 C -0.275 4.275
11 C 0.316 3.684
12 O -0.395 6.395
13 N -0.390 5.390
14 C 0.006 3.994
15 C -0.122 4.122
16 H 0.112 0.888
17 C -0.168 4.168
18 C -0.087 4.087
19 N -0.205 5.205
20 C -0.013 4.013
21 C -0.170 4.170
22 C -0.130 4.130
23 C -0.143 4.143
24 C -0.134 4.134
25 C -0.114 4.114
26 C -0.079 4.079
27 H 0.081 0.919
28 H 0.115 0.885
29 H 0.116 0.884
30 H 0.234 0.766
31 H 0.087 0.913
32 H 0.084 0.916
33 H 0.093 0.907
34 H 0.097 0.903
35 H 0.069 0.931
36 H 0.101 0.899
37 H 0.139 0.861
38 H 0.140 0.860
39 H 0.140 0.860
40 H 0.143 0.857
41 H 0.147 0.853
42 H 0.107 0.893
43 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 24.600 -20.097 -2.725 31.882
hybrid contribution -0.920 -0.102 -0.695 1.158
sum 23.679 -20.198 -3.420 31.311
Atomic orbital electron populations
1.69939 1.05908 1.27761 1.48055 1.24716 0.94457 0.98969 0.93183
0.86731 0.81898 0.83275 0.79924 1.19220 1.19935 1.15930 1.22319
0.88266 0.97541 1.58793 0.89379 1.84792 1.09288 1.00102 1.97428
1.23278 0.94014 1.04365 1.05815 1.20284 0.90593 0.82271 0.75233
1.90701 1.58796 1.42241 1.47740 1.45922 1.07322 1.08059 1.77687
1.21240 0.81829 0.93822 1.02489 1.22324 0.95822 0.94937 0.99094
0.88798 1.22543 0.98951 0.98044 0.97238 1.22991 0.92538 1.00464
0.92660 1.62434 1.02160 1.28060 1.27857 1.19035 0.91120 0.95678
0.95421 1.21695 0.96723 1.00195 0.98342 1.21060 0.94410 0.97708
0.99781 1.21202 0.99990 0.95387 0.97688 1.21139 0.95423 0.99587
0.97255 1.21040 0.93872 0.96733 0.99749 1.23294 0.95538 0.88213
1.00833 0.91944 0.88517 0.88428 0.76623 0.91278 0.91607 0.90655
0.90335 0.93058 0.89907 0.86139 0.86034 0.86027 0.85731 0.85327
0.89272 0.92579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16
2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16
3 Si 0.86 21.79 27.74 -169.99 -4.71 17.07 16
4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
5 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16
6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16
7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16
8 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16
9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16
10 C -0.12 -2.37 6.16 36.00 0.22 -2.14 16
11 C 0.53 9.23 7.85 -10.99 -0.09 9.14 16
12 O -0.52 -11.14 15.86 5.56 0.09 -11.05 16
13 N -0.74 -8.89 5.40 -60.30 -0.33 -9.21 16
14 C 0.13 1.36 5.00 -4.05 -0.02 1.34 16
15 C -0.10 -0.79 3.13 -88.77 -0.28 -1.07 16
16 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16
17 C -0.13 -0.94 6.20 -25.37 -0.16 -1.09 16
18 C 0.04 0.30 6.51 -2.75 -0.02 0.28 16
19 N -0.48 -4.06 5.28 -167.16 -0.88 -4.94 16
20 C 0.08 0.70 4.85 -83.78 -0.41 0.29 16
21 C -0.15 -1.22 7.90 -39.38 -0.31 -1.53 16
22 C -0.11 -0.80 10.04 -39.61 -0.40 -1.20 16
23 C -0.12 -0.83 10.04 -39.55 -0.40 -1.22 16
24 C -0.12 -0.77 10.04 -39.61 -0.40 -1.17 16
25 C -0.10 -0.75 9.97 -39.38 -0.39 -1.14 16
26 C 0.05 0.38 5.85 -1.90 -0.01 0.37 16
27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16
28 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16
29 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16
30 H 0.40 3.73 8.33 -40.82 -0.34 3.39 16
31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16
33 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16
34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.05 0.40 6.68 -51.93 -0.35 0.05 16
36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.12 0.93 7.05 -52.49 -0.37 0.56 16
38 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16
39 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16
40 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16
41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16
LS Contribution 366.88 15.07 5.53 5.53
Total: -1.00 -34.01 366.88 -10.41 -44.42
By element:
Atomic # 1 Polarization: 7.12 SS G_CDS: -6.45 Total: 0.67 kcal
Atomic # 6 Polarization: -8.71 SS G_CDS: -2.44 Total: -11.14 kcal
Atomic # 7 Polarization: -39.47 SS G_CDS: -0.43 Total: -39.90 kcal
Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal
Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -34.01 -10.41 -44.42 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042059308.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.473 kcal
(2) G-P(sol) polarization free energy of solvation -34.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.944 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds