Wall clock time and date at job start Tue Mar 31 2020 12:08:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86796 * 120.00145 * 2 1
4 4 H 1.48500 * 109.47397 * 269.99830 * 3 2 1
5 5 H 1.48497 * 109.47270 * 30.00121 * 3 2 1
6 6 H 1.48502 * 109.47205 * 150.00049 * 3 2 1
7 7 C 1.38803 * 119.99774 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00216 * 359.97438 * 7 2 1
9 9 S 1.76198 * 119.99788 * 180.02562 * 7 2 1
10 10 C 1.81006 * 99.99939 * 180.02562 * 9 7 2
11 11 C 1.50697 * 109.46897 * 179.97438 * 10 9 7
12 12 O 1.21278 * 120.00659 * 0.02562 * 11 10 9
13 13 N 1.34780 * 119.99676 * 179.97438 * 11 10 9
14 14 C 1.46498 * 120.00211 * 180.02562 * 13 11 10
15 15 C 1.52989 * 109.47615 * 180.02562 * 14 13 11
16 16 H 1.09001 * 110.64553 * 303.30172 * 15 14 13
17 17 C 1.54592 * 110.72658 * 66.44999 * 15 14 13
18 18 C 1.53997 * 105.14315 * 140.31946 * 17 15 14
19 19 N 1.47902 * 107.05497 * 1.22335 * 18 17 15
20 20 C 1.39672 * 111.00345 * 214.15474 * 19 18 17
21 21 C 1.38918 * 120.07035 * 59.87983 * 20 19 18
22 22 C 1.38103 * 119.92232 * 180.26003 * 21 20 19
23 23 C 1.38291 * 120.07426 * 359.43747 * 22 21 20
24 24 C 1.38281 * 120.14889 * 0.56232 * 23 22 21
25 25 C 1.38103 * 120.07737 * 359.72142 * 24 23 22
26 26 C 1.48535 * 105.82441 * 334.67472 * 19 18 17
27 27 H 0.96999 * 119.99741 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.46874 * 59.99743 * 10 9 7
29 29 H 1.09000 * 109.46383 * 299.99627 * 10 9 7
30 30 H 0.96999 * 119.99967 * 0.02562 * 13 11 10
31 31 H 1.09005 * 109.47271 * 59.99613 * 14 13 11
32 32 H 1.09002 * 109.46914 * 300.00454 * 14 13 11
33 33 H 1.09003 * 110.30784 * 21.40053 * 17 15 14
34 34 H 1.08997 * 110.39724 * 259.28095 * 17 15 14
35 35 H 1.08999 * 109.91551 * 241.87997 * 18 17 15
36 36 H 1.08996 * 109.91861 * 120.58278 * 18 17 15
37 37 H 1.08002 * 120.03585 * 359.97438 * 21 20 19
38 38 H 1.08004 * 119.95970 * 179.72372 * 22 21 20
39 39 H 1.07994 * 119.92283 * 180.28458 * 23 22 21
40 40 H 1.07998 * 119.96595 * 179.74375 * 24 23 22
41 41 H 1.08001 * 120.04036 * 179.97438 * 25 24 23
42 42 H 1.08996 * 110.66742 * 157.63885 * 26 19 18
43 43 H 1.08998 * 110.66120 * 280.77078 * 26 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0464 -1.4000
5 1 1.4479 2.6526 0.7000
6 1 3.5479 1.4401 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 1.4703 -2.1374 -0.0005
9 16 3.7723 -1.2021 0.0001
10 6 4.0865 -2.9847 -0.0017
11 6 5.5730 -3.2326 -0.0021
12 8 6.3440 -2.2965 -0.0007
13 7 6.0456 -4.4948 -0.0029
14 6 7.4906 -4.7360 -0.0026
15 6 7.7563 -6.2426 -0.0043
16 1 7.2712 -6.7194 0.8474
17 6 7.2829 -6.8802 -1.3307
18 6 8.3617 -7.9206 -1.6846
19 7 9.3669 -7.8892 -0.6001
20 6 10.6484 -8.1352 -1.0981
21 6 11.1958 -7.2931 -2.0577
22 6 12.4611 -7.5423 -2.5519
23 6 13.1875 -8.6220 -2.0841
24 6 12.6456 -9.4622 -1.1289
25 6 11.3786 -9.2222 -0.6346
26 6 9.2786 -6.5310 -0.0052
27 1 -0.4850 0.8401 -0.0004
28 1 3.6439 -3.4307 -0.8924
29 1 3.6433 -3.4326 0.8877
30 1 5.4289 -5.2436 -0.0036
31 1 7.9333 -4.2896 0.8878
32 1 7.9338 -4.2882 -0.8921
33 1 7.2168 -6.1230 -2.1120
34 1 6.3175 -7.3675 -1.1947
35 1 8.8310 -7.6608 -2.6334
36 1 7.9144 -8.9125 -1.7478
37 1 10.6307 -6.4471 -2.4203
38 1 12.8855 -6.8905 -3.3013
39 1 14.1786 -8.8119 -2.4689
40 1 13.2140 -10.3070 -0.7686
41 1 10.9558 -9.8791 0.1112
42 1 9.6709 -6.5302 1.0117
43 1 9.8072 -5.8053 -0.6233
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042059308.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:05
Heat of formation + Delta-G solvation = -28.172659 kcal
Electronic energy + Delta-G solvation = -23090.026770 eV
Core-core repulsion = 19646.067778 eV
Total energy + Delta-G solvation = -3443.958991 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.37358 -40.56929 -38.87992 -36.13289 -34.67032 -33.55325 -31.85659 -31.43631
-30.12925 -29.37144 -27.86324 -25.99442 -23.98727 -23.26089 -21.99482 -21.40343
-21.27843 -19.86649 -18.41383 -17.79474 -17.54029 -17.17058 -17.02114 -16.59680
-16.39972 -15.90856 -15.56222 -15.24316 -15.08612 -14.91820 -14.64239 -14.55105
-14.35660 -14.13027 -13.59164 -13.42407 -13.33377 -13.16929 -13.01597 -12.88951
-12.67057 -12.26575 -12.21931 -12.11843 -11.96729 -11.86035 -11.58327 -11.17021
-11.02143 -10.53284 -10.15029 -9.87593 -9.62052 -9.59242 -8.99439 -8.51397
-6.22129 0.31592 0.46044 0.99330 1.31376 1.46956 1.56053 1.56657
2.20726 2.26029 2.71474 2.79224 2.84589 2.86859 3.56401 3.66598
3.77233 3.93162 4.00335 4.07170 4.20959 4.23304 4.25497 4.31872
4.37817 4.48081 4.52849 4.53990 4.59568 4.70825 4.74166 4.83796
4.89611 4.97473 5.08698 5.13055 5.21475 5.40483 5.46818 5.54263
5.60102 5.69064 5.70939 5.89624 6.11727 6.40566 6.46732 6.93877
7.19216 8.60891
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.039422 B = 0.001924 C = 0.001879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 710.084421 B =14551.280615 C =14894.404273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.045 3.955
3 Si 0.914 3.086
4 H -0.262 1.262
5 H -0.259 1.259
6 H -0.237 1.237
7 C -0.529 4.529
8 H 0.063 0.937
9 S -0.178 6.178
10 C -0.111 4.111
11 C 0.535 3.465
12 O -0.565 6.565
13 N -0.709 5.709
14 C 0.133 3.867
15 C -0.089 4.089
16 H 0.104 0.896
17 C -0.126 4.126
18 C 0.040 3.960
19 N -0.487 5.487
20 C 0.066 3.934
21 C -0.162 4.162
22 C -0.120 4.120
23 C -0.129 4.129
24 C -0.117 4.117
25 C -0.108 4.108
26 C 0.049 3.951
27 H 0.277 0.723
28 H 0.114 0.886
29 H 0.115 0.885
30 H 0.417 0.583
31 H 0.063 0.937
32 H 0.058 0.942
33 H 0.069 0.931
34 H 0.092 0.908
35 H 0.046 0.954
36 H 0.087 0.913
37 H 0.118 0.882
38 H 0.135 0.865
39 H 0.143 0.857
40 H 0.146 0.854
41 H 0.133 0.867
42 H 0.090 0.910
43 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.159 -22.672 -3.158 34.014
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.160 4.160
3 Si 0.736 3.264
4 H -0.187 1.187
5 H -0.184 1.184
6 H -0.161 1.161
7 C -0.676 4.676
8 H 0.081 0.919
9 S 0.049 5.951
10 C -0.262 4.262
11 C 0.320 3.680
12 O -0.443 6.443
13 N -0.363 5.363
14 C 0.009 3.991
15 C -0.108 4.108
16 H 0.122 0.878
17 C -0.164 4.164
18 C -0.086 4.086
19 N -0.209 5.209
20 C -0.028 4.028
21 C -0.182 4.182
22 C -0.139 4.139
23 C -0.146 4.146
24 C -0.136 4.136
25 C -0.126 4.126
26 C -0.078 4.078
27 H 0.086 0.914
28 H 0.132 0.868
29 H 0.133 0.867
30 H 0.254 0.746
31 H 0.082 0.918
32 H 0.077 0.923
33 H 0.088 0.912
34 H 0.111 0.889
35 H 0.065 0.935
36 H 0.105 0.895
37 H 0.136 0.864
38 H 0.153 0.847
39 H 0.161 0.839
40 H 0.164 0.836
41 H 0.151 0.849
42 H 0.109 0.891
43 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 26.151 -21.467 -2.766 33.946
hybrid contribution -1.329 0.106 -0.703 1.507
sum 24.822 -21.361 -3.469 32.931
Atomic orbital electron populations
1.70016 1.07276 1.28998 1.49139 1.25564 0.95279 1.02248 0.92923
0.85866 0.80672 0.79635 0.80193 1.18718 1.18360 1.16105 1.22465
0.90243 0.96706 1.58226 0.91883 1.84726 1.06442 1.06363 1.97592
1.23273 0.95892 0.99508 1.07549 1.19951 0.89380 0.83366 0.75260
1.90693 1.59353 1.43928 1.50339 1.45675 1.08600 1.06759 1.75225
1.21318 0.80185 0.95681 1.01902 1.22195 0.95881 0.92826 0.99890
0.87753 1.22532 0.99503 0.97823 0.96549 1.22995 0.92448 1.00759
0.92379 1.62452 1.02389 1.27900 1.28129 1.19185 0.91378 0.96289
0.95996 1.21764 0.97335 1.00355 0.98765 1.21318 0.94222 0.98256
1.00067 1.21516 1.00854 0.94893 0.97372 1.21438 0.95123 1.00114
0.96880 1.21220 0.94497 0.96785 1.00145 1.23270 0.95483 0.88223
1.00848 0.91385 0.86761 0.86728 0.74573 0.91839 0.92342 0.91224
0.88929 0.93513 0.89487 0.86419 0.84724 0.83888 0.83588 0.84915
0.89132 0.93079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.66 13.97 21.65 0.30 -55.36 16
2 C 0.05 2.65 5.50 84.86 0.47 3.12 16
3 Si 0.91 44.97 27.74 68.60 1.90 46.88 16
4 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16
5 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16
6 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16
7 C -0.53 -30.66 10.04 67.96 0.68 -29.98 16
8 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16
9 S -0.18 -8.93 18.55 -56.49 -1.05 -9.98 16
10 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16
11 C 0.53 17.81 7.85 87.66 0.69 18.50 16
12 O -0.56 -23.81 15.86 -3.02 -0.05 -23.86 16
13 N -0.71 -15.56 5.40 -463.08 -2.50 -18.06 16
14 C 0.13 2.57 5.00 86.38 0.43 3.00 16
15 C -0.09 -1.20 3.13 -9.59 -0.03 -1.23 16
16 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
17 C -0.13 -1.57 6.20 31.47 0.20 -1.37 16
18 C 0.04 0.56 6.51 86.45 0.56 1.12 16
19 N -0.49 -7.63 5.28 -682.77 -3.60 -11.23 16
20 C 0.07 1.07 4.85 38.22 0.19 1.26 16
21 C -0.16 -2.56 7.90 22.40 0.18 -2.38 16
22 C -0.12 -1.61 10.04 22.25 0.22 -1.39 16
23 C -0.13 -1.48 10.04 22.29 0.22 -1.25 16
24 C -0.12 -1.37 10.04 22.25 0.22 -1.15 16
25 C -0.11 -1.57 9.97 22.40 0.22 -1.35 16
26 C 0.05 0.72 5.85 86.65 0.51 1.23 16
27 H 0.28 15.55 8.31 -92.71 -0.77 14.77 16
28 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16
29 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16
30 H 0.42 6.48 8.33 -92.71 -0.77 5.71 16
31 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16
32 H 0.06 1.27 8.07 -2.39 -0.02 1.25 16
33 H 0.07 0.97 7.80 -2.39 -0.02 0.95 16
34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
35 H 0.05 0.69 6.68 -2.39 -0.02 0.67 16
36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
37 H 0.12 1.82 7.05 -2.91 -0.02 1.80 16
38 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16
39 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16
40 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16
41 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16
42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
43 H 0.05 0.81 6.56 -2.39 -0.02 0.79 16
Total: -1.00 -73.46 366.88 0.40 -73.06
By element:
Atomic # 1 Polarization: 13.88 SS G_CDS: 0.20 Total: 14.08 kcal
Atomic # 6 Polarization: -20.71 SS G_CDS: 5.20 Total: -15.52 kcal
Atomic # 7 Polarization: -78.86 SS G_CDS: -5.80 Total: -84.66 kcal
Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal
Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal
Total: -73.46 0.40 -73.06 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042059308.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.884 kcal
(2) G-P(sol) polarization free energy of solvation -73.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds