Wall clock time and date at job start Tue Mar 31 2020 12:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99483 * 2 1 4 4 H 1.48495 * 109.46807 * 270.27494 * 3 2 1 5 5 H 1.48502 * 109.47072 * 30.27365 * 3 2 1 6 6 H 1.48500 * 109.46921 * 150.27431 * 3 2 1 7 7 C 1.37872 * 120.00367 * 180.27068 * 2 1 3 8 8 H 1.08006 * 119.99907 * 183.75827 * 7 2 1 9 9 C 1.50694 * 119.99977 * 3.76467 * 7 2 1 10 10 C 1.52995 * 115.55350 * 52.80683 * 9 7 2 11 11 N 1.46907 * 109.47190 * 60.62770 * 10 9 7 12 12 C 1.46956 * 110.99782 * 285.11116 * 11 10 9 13 13 C 1.53049 * 109.36300 * 176.81095 * 12 11 10 14 14 N 1.46957 * 109.36543 * 58.39822 * 13 12 11 15 15 C 1.39749 * 110.99848 * 176.81457 * 14 13 12 16 16 C 1.38878 * 120.08158 * 13.37300 * 15 14 13 17 17 C 1.38125 * 119.93793 * 179.72558 * 16 15 14 18 18 C 1.38292 * 120.09306 * 0.54512 * 17 16 15 19 19 C 1.38274 * 120.15651 * 359.73252 * 18 17 16 20 20 C 1.38206 * 120.06128 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.04764 * 180.02562 * 20 19 18 22 22 C 1.46956 * 110.88311 * 300.67993 * 14 13 12 23 23 C 1.46957 * 111.00173 * 161.30846 * 11 10 9 24 24 C 1.53002 * 117.49833 * 267.13458 * 9 7 2 25 25 C 1.53007 * 117.49893 * 198.47569 * 9 7 2 26 26 H 0.96998 * 120.00829 * 4.73976 * 1 2 3 27 27 H 1.08999 * 109.47275 * 180.62844 * 10 9 7 28 28 H 1.09004 * 109.47223 * 300.63050 * 10 9 7 29 29 H 1.09004 * 109.48792 * 296.77598 * 12 11 10 30 30 H 1.08998 * 109.49053 * 56.84111 * 12 11 10 31 31 H 1.09002 * 109.49119 * 298.43498 * 13 12 11 32 32 H 1.08996 * 109.50862 * 178.37693 * 13 12 11 33 33 H 1.08000 * 120.02803 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.94863 * 180.27645 * 17 16 15 35 35 H 1.07996 * 119.91896 * 179.74717 * 18 17 16 36 36 H 1.07997 * 119.96692 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.49005 * 299.35850 * 22 14 13 38 38 H 1.08993 * 109.51194 * 179.29674 * 22 14 13 39 39 H 1.09000 * 109.49124 * 303.15916 * 23 11 10 40 40 H 1.09002 * 109.48408 * 63.22066 * 23 11 10 41 41 H 1.09002 * 117.49776 * 0.02562 * 24 9 7 42 42 H 1.08998 * 117.50043 * 145.01742 * 24 9 7 43 43 H 1.08993 * 117.50018 * 214.97901 * 25 9 7 44 44 H 1.08999 * 117.49543 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4907 2.0499 -1.4000 5 1 1.4493 2.6511 0.7058 6 1 3.5495 1.4387 0.6942 7 6 2.0046 -1.1939 -0.0056 8 1 3.0829 -1.1952 0.0557 9 6 1.2536 -2.4972 -0.0975 10 6 0.2654 -2.6090 -1.2601 11 7 0.9879 -2.4712 -2.5318 12 6 1.3651 -1.0717 -2.7742 13 6 2.1823 -0.9827 -4.0652 14 7 1.3878 -1.5121 -5.1824 15 6 2.0751 -1.3811 -6.3921 16 6 3.4293 -1.0733 -6.3935 17 6 4.1070 -0.9501 -7.5907 18 6 3.4364 -1.1217 -8.7879 19 6 2.0868 -1.4226 -8.7912 20 6 1.4037 -1.5533 -7.5969 21 17 -0.2905 -1.9317 -7.6015 22 6 1.0105 -2.9116 -4.9400 23 6 0.1933 -3.0006 -3.6490 24 6 0.8832 -3.1930 1.2138 25 6 1.9908 -3.7688 0.3278 26 1 -0.4851 0.8371 -0.0694 27 1 -0.2277 -3.5804 -1.2258 28 1 -0.4816 -1.8192 -1.1793 29 1 0.4653 -0.4640 -2.8708 30 1 1.9631 -0.7064 -1.9394 31 1 3.0954 -1.5685 -3.9588 32 1 2.4389 0.0580 -4.2626 33 1 3.9529 -0.9344 -5.4591 34 1 5.1611 -0.7151 -7.5919 35 1 3.9682 -1.0207 -9.7224 36 1 1.5663 -1.5563 -9.7279 37 1 1.9103 -3.5193 -4.8433 38 1 0.4126 -3.2773 -5.7747 39 1 -0.0630 -4.0415 -3.4518 40 1 -0.7197 -2.4148 -3.7554 41 1 1.1823 -2.7079 2.1430 42 1 -0.0643 -3.7306 1.2482 43 1 1.7714 -4.6849 -0.2205 44 1 3.0190 -3.6626 0.6735 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:58 Heat of formation + Delta-G solvation = 73.930014 kcal Electronic energy + Delta-G solvation = -25504.375974 eV Core-core repulsion = 22062.800781 eV Total energy + Delta-G solvation = -3441.575193 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20171 -38.17398 -36.56461 -36.31968 -34.19646 -32.30497 -31.06736 -30.12518 -29.84973 -26.73864 -25.75233 -23.83008 -23.30298 -21.87295 -21.51300 -21.04837 -19.16908 -18.96489 -17.63012 -16.18718 -15.94434 -15.67797 -14.86985 -14.74342 -14.55497 -14.29307 -14.12340 -13.77677 -13.68173 -13.53947 -13.31958 -12.78491 -12.59743 -12.00318 -11.95805 -11.55016 -11.48100 -11.44221 -11.15356 -11.10427 -10.77454 -10.67449 -10.56360 -10.46153 -10.24897 -10.17114 -9.98383 -9.46754 -9.28286 -8.88041 -8.83840 -8.55648 -8.04172 -7.80267 -7.24163 -6.08970 -4.08742 1.13889 1.23144 2.25419 3.21432 3.31384 3.32772 3.54316 3.95133 4.30563 4.73019 4.77654 4.87694 5.09851 5.11023 5.24770 5.28279 5.48771 5.54063 5.58186 5.70577 5.74454 5.79847 5.92583 6.05262 6.07685 6.11201 6.17815 6.30882 6.35637 6.37596 6.42825 6.62957 6.66138 6.73299 6.80670 6.87290 7.01822 7.10360 7.21758 7.37240 7.41173 7.43486 7.50784 7.83421 8.16755 8.21943 8.45447 8.84776 9.43587 10.93821 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.004203 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.688522 B = 6660.086200 C = 7351.426133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.477 4.477 8 H 0.061 0.939 9 C 0.063 3.937 10 C 0.095 3.905 11 N -0.522 5.522 12 C 0.043 3.957 13 C 0.052 3.948 14 N -0.489 5.489 15 C 0.128 3.872 16 C -0.159 4.159 17 C -0.093 4.093 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.052 4.052 21 Cl -0.063 7.063 22 C 0.065 3.935 23 C 0.054 3.946 24 C -0.194 4.194 25 C -0.200 4.200 26 H 0.261 0.739 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.142 0.858 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -3.153 -15.428 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.062 3.938 10 C -0.032 4.032 11 N -0.247 5.247 12 C -0.084 4.084 13 C -0.075 4.075 14 N -0.205 5.205 15 C 0.029 3.971 16 C -0.180 4.180 17 C -0.112 4.112 18 C -0.160 4.160 19 C -0.113 4.113 20 C -0.081 4.081 21 Cl -0.034 7.034 22 C -0.060 4.060 23 C -0.075 4.075 24 C -0.232 4.232 25 C -0.237 4.237 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.159 0.841 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.294 -3.079 -15.269 15.921 hybrid contribution 0.101 0.973 -0.051 0.980 sum 3.396 -2.106 -15.319 15.832 Atomic orbital electron populations 1.69913 1.05721 1.26764 1.48785 1.24945 0.94841 0.98602 0.94835 0.86838 0.80252 0.84025 0.78590 1.20107 1.21070 1.19639 1.20459 0.92674 0.89006 1.49302 0.92113 1.18767 0.95113 0.90172 0.89754 1.21599 0.95726 0.98604 0.87264 1.62052 1.41907 1.19425 1.01308 1.22934 0.99809 0.88945 0.96741 1.22580 0.95758 0.99023 0.90108 1.59384 1.40675 1.19660 1.00743 1.18889 0.90672 0.97183 0.90385 1.21541 0.92681 1.04274 0.99539 1.21106 0.99959 0.98047 0.92062 1.20976 0.93836 1.02841 0.98306 1.20910 0.94557 0.99562 0.96308 1.20639 0.85732 1.08114 0.93609 1.98347 1.13753 1.92595 1.98688 1.22290 0.99609 0.85636 0.98492 1.22122 0.94942 0.99734 0.90696 1.22853 0.96902 1.05983 0.97495 1.22776 0.96038 0.98837 1.06025 0.92842 0.94999 0.90881 0.95247 0.84146 0.93152 0.90846 0.84483 0.85649 0.85553 0.85187 0.93563 0.90118 0.91126 0.94888 0.90567 0.92051 0.91609 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.06 11.38 55.43 0.63 -22.43 16 2 C 0.07 1.79 3.64 -17.82 -0.06 1.72 16 3 Si 0.88 19.76 29.16 -169.99 -4.96 14.80 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.48 -12.05 6.49 -34.45 -0.22 -12.28 16 8 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 9 C 0.06 1.49 1.78 -155.66 -0.28 1.21 16 10 C 0.10 2.15 4.76 -3.82 -0.02 2.13 16 11 N -0.52 -10.74 4.65 -234.46 -1.09 -11.83 16 12 C 0.04 0.90 4.73 -3.77 -0.02 0.89 16 13 C 0.05 0.92 4.35 -3.77 -0.02 0.90 16 14 N -0.49 -8.10 4.34 -170.92 -0.74 -8.84 16 15 C 0.13 1.89 5.34 -83.73 -0.45 1.44 16 16 C -0.16 -2.09 8.88 -39.39 -0.35 -2.44 16 17 C -0.09 -1.00 10.04 -39.60 -0.40 -1.40 16 18 C -0.14 -1.41 10.04 -39.55 -0.40 -1.80 16 19 C -0.09 -1.05 9.82 -39.58 -0.39 -1.44 16 20 C -0.05 -0.71 6.15 -39.31 -0.24 -0.95 16 21 Cl -0.06 -0.85 26.24 -51.86 -1.36 -2.21 16 22 C 0.06 1.04 5.26 -3.77 -0.02 1.02 16 23 C 0.05 0.96 5.57 -3.77 -0.02 0.94 16 24 C -0.19 -4.38 9.95 -26.69 -0.27 -4.65 16 25 C -0.20 -4.31 9.95 -26.69 -0.27 -4.57 16 26 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 27 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 28 H 0.07 1.85 6.12 -51.93 -0.32 1.53 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.14 3.28 3.35 -51.93 -0.17 3.11 16 31 H 0.05 0.87 6.98 -51.93 -0.36 0.50 16 32 H 0.07 1.25 7.82 -51.93 -0.41 0.85 16 33 H 0.14 1.76 5.92 -52.49 -0.31 1.45 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.20 5.79 -51.93 -0.30 0.89 16 39 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -26.13 352.93 -12.08 -38.21 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.47 Total: 6.25 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.41 Total: -19.27 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -1.20 Total: -43.11 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.96 Total: 14.80 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.36 Total: -2.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.13 -12.08 -38.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.141 kcal (2) G-P(sol) polarization free energy of solvation -26.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds