Wall clock time and date at job start Tue Mar 31 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99483 * 2 1 4 4 H 1.48495 * 109.46807 * 270.27494 * 3 2 1 5 5 H 1.48502 * 109.47072 * 30.27365 * 3 2 1 6 6 H 1.48500 * 109.46921 * 150.27431 * 3 2 1 7 7 C 1.37872 * 120.00367 * 180.27068 * 2 1 3 8 8 H 1.08006 * 119.99907 * 183.75827 * 7 2 1 9 9 C 1.50694 * 119.99977 * 3.76467 * 7 2 1 10 10 C 1.52995 * 115.55350 * 52.80683 * 9 7 2 11 11 N 1.46907 * 109.47190 * 60.62770 * 10 9 7 12 12 C 1.46956 * 110.99782 * 285.11116 * 11 10 9 13 13 C 1.53049 * 109.36300 * 176.81095 * 12 11 10 14 14 N 1.46957 * 109.36543 * 58.39822 * 13 12 11 15 15 C 1.39749 * 110.99848 * 176.81457 * 14 13 12 16 16 C 1.38878 * 120.08158 * 13.37300 * 15 14 13 17 17 C 1.38125 * 119.93793 * 179.72558 * 16 15 14 18 18 C 1.38292 * 120.09306 * 0.54512 * 17 16 15 19 19 C 1.38274 * 120.15651 * 359.73252 * 18 17 16 20 20 C 1.38206 * 120.06128 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.04764 * 180.02562 * 20 19 18 22 22 C 1.46956 * 110.88311 * 300.67993 * 14 13 12 23 23 C 1.46957 * 111.00173 * 161.30846 * 11 10 9 24 24 C 1.53002 * 117.49833 * 267.13458 * 9 7 2 25 25 C 1.53007 * 117.49893 * 198.47569 * 9 7 2 26 26 H 0.96998 * 120.00829 * 4.73976 * 1 2 3 27 27 H 1.08999 * 109.47275 * 180.62844 * 10 9 7 28 28 H 1.09004 * 109.47223 * 300.63050 * 10 9 7 29 29 H 1.09004 * 109.48792 * 296.77598 * 12 11 10 30 30 H 1.08998 * 109.49053 * 56.84111 * 12 11 10 31 31 H 1.09002 * 109.49119 * 298.43498 * 13 12 11 32 32 H 1.08996 * 109.50862 * 178.37693 * 13 12 11 33 33 H 1.08000 * 120.02803 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.94863 * 180.27645 * 17 16 15 35 35 H 1.07996 * 119.91896 * 179.74717 * 18 17 16 36 36 H 1.07997 * 119.96692 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.49005 * 299.35850 * 22 14 13 38 38 H 1.08993 * 109.51194 * 179.29674 * 22 14 13 39 39 H 1.09000 * 109.49124 * 303.15916 * 23 11 10 40 40 H 1.09002 * 109.48408 * 63.22066 * 23 11 10 41 41 H 1.09002 * 117.49776 * 0.02562 * 24 9 7 42 42 H 1.08998 * 117.50043 * 145.01742 * 24 9 7 43 43 H 1.08993 * 117.50018 * 214.97901 * 25 9 7 44 44 H 1.08999 * 117.49543 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4907 2.0499 -1.4000 5 1 1.4493 2.6511 0.7058 6 1 3.5495 1.4387 0.6942 7 6 2.0046 -1.1939 -0.0056 8 1 3.0829 -1.1952 0.0557 9 6 1.2536 -2.4972 -0.0975 10 6 0.2654 -2.6090 -1.2601 11 7 0.9879 -2.4712 -2.5318 12 6 1.3651 -1.0717 -2.7742 13 6 2.1823 -0.9827 -4.0652 14 7 1.3878 -1.5121 -5.1824 15 6 2.0751 -1.3811 -6.3921 16 6 3.4293 -1.0733 -6.3935 17 6 4.1070 -0.9501 -7.5907 18 6 3.4364 -1.1217 -8.7879 19 6 2.0868 -1.4226 -8.7912 20 6 1.4037 -1.5533 -7.5969 21 17 -0.2905 -1.9317 -7.6015 22 6 1.0105 -2.9116 -4.9400 23 6 0.1933 -3.0006 -3.6490 24 6 0.8832 -3.1930 1.2138 25 6 1.9908 -3.7688 0.3278 26 1 -0.4851 0.8371 -0.0694 27 1 -0.2277 -3.5804 -1.2258 28 1 -0.4816 -1.8192 -1.1793 29 1 0.4653 -0.4640 -2.8708 30 1 1.9631 -0.7064 -1.9394 31 1 3.0954 -1.5685 -3.9588 32 1 2.4389 0.0580 -4.2626 33 1 3.9529 -0.9344 -5.4591 34 1 5.1611 -0.7151 -7.5919 35 1 3.9682 -1.0207 -9.7224 36 1 1.5663 -1.5563 -9.7279 37 1 1.9103 -3.5193 -4.8433 38 1 0.4126 -3.2773 -5.7747 39 1 -0.0630 -4.0415 -3.4518 40 1 -0.7197 -2.4148 -3.7554 41 1 1.1823 -2.7079 2.1430 42 1 -0.0643 -3.7306 1.2482 43 1 1.7714 -4.6849 -0.2205 44 1 3.0190 -3.6626 0.6735 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:57 Heat of formation + Delta-G solvation = 60.831220 kcal Electronic energy + Delta-G solvation = -25504.943981 eV Core-core repulsion = 22062.800781 eV Total energy + Delta-G solvation = -3442.143200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34966 -39.57156 -38.09645 -37.31952 -35.64928 -34.23083 -32.22200 -31.34382 -31.03225 -28.18262 -27.65512 -25.17328 -24.74087 -23.02807 -22.82688 -22.58341 -20.87634 -20.56617 -18.69986 -17.98249 -17.05981 -16.78394 -16.62781 -16.18116 -15.85793 -15.78318 -15.59980 -15.12635 -14.97401 -14.74201 -14.47819 -14.46250 -14.04167 -13.55014 -13.32170 -13.00112 -12.85727 -12.82581 -12.57306 -12.38803 -12.35284 -12.24373 -12.03674 -12.00134 -11.90958 -11.78101 -11.40206 -11.16875 -10.75449 -10.49960 -10.39273 -9.90094 -9.76862 -8.98257 -8.89383 -8.04069 -6.07852 0.22517 0.31164 1.27209 1.39604 1.44504 1.50362 2.41862 2.59114 2.80951 3.05445 3.25382 3.76381 3.83275 3.92041 4.05139 4.13642 4.22569 4.29539 4.39244 4.40460 4.43841 4.50975 4.57748 4.64421 4.67123 4.77403 4.86469 4.87580 4.90850 4.97288 5.05067 5.13749 5.21496 5.24489 5.30267 5.40916 5.49886 5.55535 5.60382 5.64739 5.77329 5.87000 5.95938 6.22529 6.44381 6.48053 6.59259 6.89120 7.46366 8.97079 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.004203 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.688522 B = 6660.086200 C = 7351.426133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.041 3.959 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.483 4.483 8 H 0.051 0.949 9 C 0.036 3.964 10 C 0.105 3.895 11 N -0.521 5.521 12 C 0.052 3.948 13 C 0.065 3.935 14 N -0.499 5.499 15 C 0.099 3.901 16 C -0.171 4.171 17 C -0.090 4.090 18 C -0.128 4.128 19 C -0.095 4.095 20 C -0.066 4.066 21 Cl -0.072 7.072 22 C 0.074 3.926 23 C 0.055 3.945 24 C -0.197 4.197 25 C -0.178 4.178 26 H 0.257 0.743 27 H 0.042 0.958 28 H 0.040 0.960 29 H -0.004 1.004 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.017 0.983 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -3.676 -17.843 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.159 4.159 3 Si 0.748 3.252 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.035 3.965 10 C -0.022 4.022 11 N -0.245 5.245 12 C -0.076 4.076 13 C -0.062 4.062 14 N -0.216 5.216 15 C 0.001 3.999 16 C -0.192 4.192 17 C -0.108 4.108 18 C -0.146 4.146 19 C -0.113 4.113 20 C -0.094 4.094 21 Cl -0.043 7.043 22 C -0.051 4.051 23 C -0.074 4.074 24 C -0.235 4.235 25 C -0.215 4.215 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.015 0.985 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.035 0.965 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.019 -3.609 -17.702 18.750 hybrid contribution -0.380 1.113 0.618 1.329 sum 4.639 -2.495 -17.083 17.877 Atomic orbital electron populations 1.70030 1.06806 1.26924 1.49907 1.25388 0.95216 1.00774 0.94569 0.86113 0.79273 0.81077 0.78785 1.19323 1.21617 1.19224 1.20566 0.92273 0.90113 1.49101 0.93049 1.18896 0.96287 0.90618 0.90652 1.21383 0.94885 0.97812 0.88144 1.62065 1.42030 1.19004 1.01450 1.22671 0.98334 0.88680 0.97867 1.22330 0.95239 0.99464 0.89158 1.59338 1.41306 1.19825 1.01133 1.18990 0.91594 0.99559 0.89746 1.21643 0.92222 1.04723 1.00618 1.21462 1.01290 0.96742 0.91354 1.21428 0.93335 1.00373 0.99505 1.21253 0.95224 0.98631 0.96236 1.20840 0.85491 1.08961 0.94134 1.98341 1.14539 1.92711 1.98700 1.22195 0.99342 0.85909 0.97662 1.22196 0.94342 1.00080 0.90743 1.22829 0.97931 1.06115 0.96654 1.22761 0.95704 0.98352 1.04723 0.93309 0.93981 0.94151 0.98519 0.86352 0.92682 0.90610 0.84868 0.82859 0.81983 0.83012 0.93592 0.88843 0.89481 0.96482 0.91706 0.91024 0.89836 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.92 11.38 21.45 0.24 -48.68 16 2 C 0.04 2.12 3.64 84.65 0.31 2.43 16 3 Si 0.92 41.16 29.16 68.60 2.00 43.16 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.48 -24.81 6.49 25.60 0.17 -24.64 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.65 16 9 C 0.04 1.73 1.78 -52.93 -0.09 1.63 16 10 C 0.11 4.84 4.76 86.30 0.41 5.25 16 11 N -0.52 -21.68 4.65 -895.70 -4.16 -25.84 16 12 C 0.05 2.26 4.73 86.31 0.41 2.67 16 13 C 0.07 2.32 4.35 86.31 0.38 2.69 16 14 N -0.50 -16.43 4.34 -694.67 -3.01 -19.44 16 15 C 0.10 2.81 5.34 38.21 0.20 3.02 16 16 C -0.17 -4.18 8.88 22.40 0.20 -3.98 16 17 C -0.09 -1.62 10.04 22.26 0.22 -1.39 16 18 C -0.13 -2.01 10.04 22.29 0.22 -1.79 16 19 C -0.09 -1.81 9.82 22.27 0.22 -1.59 16 20 C -0.07 -1.66 6.15 22.44 0.14 -1.53 16 21 Cl -0.07 -1.87 26.24 -2.72 -0.07 -1.94 16 22 C 0.07 2.33 5.26 86.31 0.45 2.78 16 23 C 0.06 1.96 5.57 86.31 0.48 2.44 16 24 C -0.20 -8.86 9.95 30.62 0.30 -8.56 16 25 C -0.18 -7.50 9.95 30.62 0.30 -7.20 16 26 H 0.26 13.70 8.32 -92.71 -0.77 12.93 16 27 H 0.04 1.79 7.83 -2.39 -0.02 1.77 16 28 H 0.04 2.13 6.12 -2.38 -0.01 2.11 16 29 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 30 H 0.12 5.69 3.35 -2.39 -0.01 5.68 16 31 H 0.06 1.88 6.98 -2.39 -0.02 1.86 16 32 H 0.08 2.61 7.82 -2.39 -0.02 2.59 16 33 H 0.13 3.26 5.92 -2.91 -0.02 3.24 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 2.69 5.79 -2.39 -0.01 2.68 16 39 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16 40 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -57.27 352.93 0.32 -56.95 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.99 Total: 23.56 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.32 Total: -27.76 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -6.93 Total: -93.96 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.00 Total: 43.16 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.94 kcal Total: -57.27 0.32 -56.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.784 kcal (2) G-P(sol) polarization free energy of solvation -57.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds