Wall clock time and date at job start Tue Mar 31 2020 12:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99615 * 2 1 4 4 C 1.38496 * 119.95748 * 0.02562 * 3 2 1 5 5 C 1.39557 * 119.90499 * 179.97438 * 4 3 2 6 6 C 1.47760 * 120.09880 * 179.97438 * 5 4 3 7 7 O 1.21460 * 119.99998 * 5.05268 * 6 5 4 8 8 O 1.34709 * 119.99706 * 185.04373 * 6 5 4 9 9 C 1.45203 * 116.99643 * 185.04018 * 8 6 5 10 10 C 1.53001 * 109.46984 * 184.94163 * 9 8 6 11 11 C 1.50700 * 115.55030 * 54.24461 * 10 9 8 12 12 H 1.08000 * 119.99533 * 215.59400 * 11 10 9 13 13 C 1.37870 * 120.00493 * 35.31070 * 11 10 9 14 14 N 1.31524 * 119.99796 * 355.74905 * 13 11 10 15 15 Si 1.86797 * 120.00332 * 175.74574 * 13 11 10 16 16 H 1.48495 * 109.47035 * 90.00364 * 15 13 11 17 17 H 1.48504 * 109.47204 * 210.00351 * 15 13 11 18 18 H 1.48501 * 109.46857 * 330.00007 * 15 13 11 19 19 C 1.53005 * 117.49639 * 199.90951 * 10 9 8 20 20 C 1.53003 * 117.50019 * 268.56989 * 10 9 8 21 21 C 1.39562 * 119.80473 * 0.25838 * 5 4 3 22 22 C 1.38505 * 119.90004 * 359.53275 * 21 5 4 23 23 O 1.35905 * 119.95136 * 180.23217 * 22 21 5 24 24 C 1.42901 * 117.00056 * 0.21482 * 23 22 21 25 25 C 1.38735 * 120.09382 * 0.44393 * 22 21 5 26 26 C 1.50704 * 119.89876 * 179.76772 * 25 22 21 27 27 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47036 * 299.99753 * 1 2 3 29 29 H 1.09008 * 109.47458 * 59.99812 * 1 2 3 30 30 H 1.08005 * 120.04711 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47444 * 64.94114 * 9 8 6 32 32 H 1.08998 * 109.47017 * 304.93580 * 9 8 6 33 33 H 0.96993 * 119.99726 * 184.99839 * 14 13 11 34 34 H 1.09000 * 117.49860 * 215.00408 * 19 10 9 35 35 H 1.09001 * 117.49806 * 0.02640 * 19 10 9 36 36 H 1.09005 * 117.49536 * 359.97309 * 20 10 9 37 37 H 1.08996 * 117.50059 * 144.97331 * 20 10 9 38 38 H 1.08000 * 120.05146 * 179.72233 * 21 5 4 39 39 H 1.08998 * 109.46821 * 180.02562 * 24 23 22 40 40 H 1.09006 * 109.46808 * 299.99378 * 24 23 22 41 41 H 1.09001 * 109.47459 * 59.99754 * 24 23 22 42 42 H 1.09001 * 109.46666 * 270.01853 * 26 25 22 43 43 H 1.08991 * 109.47163 * 30.01939 * 26 25 22 44 44 H 1.08999 * 109.46834 * 150.02289 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2907 2.3719 0.0005 5 6 1.9253 3.6148 0.0011 6 6 1.1237 4.8561 0.0011 7 8 -0.0860 4.7978 0.0933 8 8 1.7347 6.0523 -0.1010 9 6 0.8972 7.2325 0.0187 10 6 1.7381 8.4833 -0.2446 11 6 2.4931 8.4962 -1.5488 12 1 3.4708 8.9520 -1.6022 13 6 1.9384 7.9212 -2.6723 14 7 0.7885 7.2883 -2.5876 15 14 2.8197 8.0410 -4.3150 16 1 3.7306 6.8790 -4.4739 17 1 1.8207 8.0407 -5.4139 18 1 3.6081 9.2984 -4.3631 19 6 1.1994 9.8185 0.2731 20 6 2.3973 9.1579 0.9601 21 6 3.3193 3.6819 -0.0044 22 6 4.0667 2.5158 -0.0005 23 8 5.4242 2.5800 -0.0011 24 6 6.0122 3.8824 -0.0009 25 6 3.4315 1.2824 -0.0005 26 6 4.2490 0.0164 -0.0016 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2121 2.3154 0.0014 31 1 0.4790 7.2809 1.0241 32 1 0.0879 7.1790 -0.7094 33 1 0.4336 6.8220 -3.3604 34 1 1.3912 10.7063 -0.3296 35 1 0.2462 9.8057 0.8016 36 1 2.2316 8.7109 1.9403 37 1 3.3773 9.6107 0.8095 38 1 3.8145 4.6417 -0.0085 39 1 7.0983 3.7907 -0.0019 40 1 5.6930 4.4252 -0.8908 41 1 5.6937 4.4248 0.8893 42 1 4.4456 -0.2882 -1.0296 43 1 5.1939 0.1937 0.5118 44 1 3.6986 -0.7719 0.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174735341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:39 Heat of formation + Delta-G solvation = -105.110607 kcal Electronic energy + Delta-G solvation = -27577.310720 eV Core-core repulsion = 23654.969827 eV Total energy + Delta-G solvation = -3922.340893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67943 -39.24744 -38.99343 -36.86842 -36.11860 -34.95104 -32.88385 -32.20636 -29.57314 -27.88058 -27.76026 -27.08296 -26.06709 -25.31203 -22.57265 -21.76792 -21.29947 -20.47878 -19.19366 -18.30185 -17.14952 -16.54359 -16.37747 -16.05038 -15.99737 -15.56988 -15.49264 -15.30893 -15.03026 -14.58301 -14.37021 -13.75254 -13.38900 -13.36120 -13.06413 -12.47929 -12.43295 -12.23535 -12.00875 -11.83670 -11.73188 -11.55085 -11.49389 -11.36121 -11.04786 -10.99401 -10.82678 -10.57922 -10.53414 -10.36730 -9.99830 -9.59510 -9.33075 -9.01446 -8.79907 -8.29457 -8.26553 -8.10274 -6.01264 -4.15291 0.90742 1.45883 2.85948 3.07910 3.23924 3.32081 3.34039 3.49246 3.65096 3.97874 4.32611 4.78258 4.92675 4.94814 4.97677 5.07205 5.12763 5.27898 5.28839 5.31532 5.38861 5.45960 5.52828 5.57648 5.66333 5.74637 5.74929 5.97572 6.06854 6.19417 6.20390 6.35637 6.42454 6.46310 6.48593 6.59817 6.63548 6.78115 6.94146 7.20077 7.24135 7.37111 7.43515 7.56745 7.88636 8.28942 8.64890 8.83261 9.47088 10.93205 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004258 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.491809 B = 6574.689191 C = 7060.759515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.146 3.854 4 C -0.182 4.182 5 C -0.037 4.037 6 C 0.501 3.499 7 O -0.517 6.517 8 O -0.313 6.313 9 C 0.118 3.882 10 C 0.046 3.954 11 C -0.481 4.481 12 H 0.062 0.938 13 C 0.073 3.927 14 N -0.882 5.882 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.195 4.195 20 C -0.209 4.209 21 C -0.179 4.179 22 C 0.148 3.852 23 O -0.311 6.311 24 C 0.023 3.977 25 C -0.129 4.129 26 C -0.094 4.094 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.020 0.980 32 H 0.121 0.879 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.151 0.849 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 -12.513 5.677 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.101 3.899 4 C -0.201 4.201 5 C -0.038 4.038 6 C 0.345 3.655 7 O -0.409 6.409 8 O -0.227 6.227 9 C 0.045 3.955 10 C 0.045 3.955 11 C -0.518 4.518 12 H 0.080 0.920 13 C -0.130 4.130 14 N -0.519 5.519 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.233 4.233 20 C -0.246 4.246 21 C -0.198 4.198 22 C 0.102 3.898 23 O -0.225 6.225 24 C -0.072 4.072 25 C -0.130 4.130 26 C -0.150 4.150 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.039 0.961 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.330 -12.857 5.541 14.655 hybrid contribution -0.089 0.702 -0.866 1.118 sum 4.241 -12.155 4.675 13.696 Atomic orbital electron populations 1.23118 0.78015 1.03843 1.02061 1.86020 1.21538 1.26057 1.88767 1.18119 0.90713 0.84102 0.96952 1.21176 1.00970 0.90400 1.07577 1.18826 0.92584 0.91151 1.01242 1.20862 0.86133 0.84955 0.73547 1.90731 1.15230 1.88345 1.46605 1.86478 1.42064 1.13778 1.80368 1.22902 0.94532 0.79906 0.98134 1.18932 0.96560 0.87461 0.92535 1.20427 1.02485 1.37667 0.91231 0.91993 1.24961 0.94516 0.94459 0.99016 1.69756 1.18504 1.33190 1.30475 0.86516 0.79317 0.78571 0.83235 1.20546 1.21079 1.19750 1.22990 0.95813 0.99647 1.04878 1.22952 0.96601 1.07806 0.97260 1.21575 0.93623 0.98653 1.05995 1.18255 0.82788 0.92370 0.96338 1.86005 1.16507 1.31399 1.88561 1.23169 0.98655 0.82855 1.02543 1.18448 0.90546 0.94304 1.09728 1.20426 0.98879 0.93474 1.02268 0.88157 0.92322 0.92241 0.83929 0.96138 0.86181 0.92685 0.89782 0.91414 0.91294 0.90332 0.83148 0.88154 0.91761 0.92115 0.91513 0.91223 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.00 9.52 -19.44 -0.19 -4.18 16 3 C 0.15 2.18 6.65 -39.30 -0.26 1.92 16 4 C -0.18 -3.02 8.58 -38.99 -0.33 -3.35 16 5 C -0.04 -0.69 5.87 -105.02 -0.62 -1.31 16 6 C 0.50 11.22 7.88 34.62 0.27 11.50 16 7 O -0.52 -12.43 16.05 -19.23 -0.31 -12.74 16 8 O -0.31 -7.52 8.99 -40.52 -0.36 -7.88 16 9 C 0.12 2.92 4.45 37.16 0.17 3.08 16 10 C 0.05 1.12 2.21 -155.66 -0.34 0.77 16 11 C -0.48 -12.73 8.79 -34.44 -0.30 -13.04 16 12 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 13 C 0.07 1.95 5.35 -17.82 -0.10 1.85 16 14 N -0.88 -24.33 10.16 55.43 0.56 -23.76 16 15 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.20 -4.26 9.96 -26.69 -0.27 -4.52 16 20 C -0.21 -4.42 9.92 -26.69 -0.26 -4.68 16 21 C -0.18 -3.08 8.60 -38.99 -0.34 -3.41 16 22 C 0.15 2.28 6.65 -39.30 -0.26 2.01 16 23 O -0.31 -4.27 9.52 -19.44 -0.19 -4.45 16 24 C 0.02 0.25 9.81 101.05 0.99 1.24 16 25 C -0.13 -1.89 5.91 -104.25 -0.62 -2.50 16 26 C -0.09 -1.11 9.56 36.01 0.34 -0.77 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 29 H 0.06 0.58 7.66 -51.92 -0.40 0.18 16 30 H 0.14 2.26 5.88 -52.48 -0.31 1.95 16 31 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 3.29 5.76 -51.93 -0.30 2.99 16 33 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.15 2.58 5.84 -52.49 -0.31 2.27 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 41 H 0.06 0.65 7.67 -51.93 -0.40 0.26 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 44 H 0.07 0.75 7.52 -51.93 -0.39 0.36 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -30.32 369.44 -7.08 -37.39 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.21 Total: 4.28 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.93 Total: -9.97 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.56 Total: -23.76 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.04 Total: -29.25 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.32 -7.08 -37.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.718 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds