Wall clock time and date at job start Tue Mar 31 2020 12:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99615 * 2 1 4 4 C 1.38496 * 119.95748 * 0.02562 * 3 2 1 5 5 C 1.39557 * 119.90499 * 179.97438 * 4 3 2 6 6 C 1.47760 * 120.09880 * 179.97438 * 5 4 3 7 7 O 1.21460 * 119.99998 * 5.05268 * 6 5 4 8 8 O 1.34709 * 119.99706 * 185.04373 * 6 5 4 9 9 C 1.45203 * 116.99643 * 185.04018 * 8 6 5 10 10 C 1.53001 * 109.46984 * 184.94163 * 9 8 6 11 11 C 1.50700 * 115.55030 * 54.24461 * 10 9 8 12 12 H 1.08000 * 119.99533 * 215.59400 * 11 10 9 13 13 C 1.37870 * 120.00493 * 35.31070 * 11 10 9 14 14 N 1.31524 * 119.99796 * 355.74905 * 13 11 10 15 15 Si 1.86797 * 120.00332 * 175.74574 * 13 11 10 16 16 H 1.48495 * 109.47035 * 90.00364 * 15 13 11 17 17 H 1.48504 * 109.47204 * 210.00351 * 15 13 11 18 18 H 1.48501 * 109.46857 * 330.00007 * 15 13 11 19 19 C 1.53005 * 117.49639 * 199.90951 * 10 9 8 20 20 C 1.53003 * 117.50019 * 268.56989 * 10 9 8 21 21 C 1.39562 * 119.80473 * 0.25838 * 5 4 3 22 22 C 1.38505 * 119.90004 * 359.53275 * 21 5 4 23 23 O 1.35905 * 119.95136 * 180.23217 * 22 21 5 24 24 C 1.42901 * 117.00056 * 0.21482 * 23 22 21 25 25 C 1.38735 * 120.09382 * 0.44393 * 22 21 5 26 26 C 1.50704 * 119.89876 * 179.76772 * 25 22 21 27 27 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47036 * 299.99753 * 1 2 3 29 29 H 1.09008 * 109.47458 * 59.99812 * 1 2 3 30 30 H 1.08005 * 120.04711 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47444 * 64.94114 * 9 8 6 32 32 H 1.08998 * 109.47017 * 304.93580 * 9 8 6 33 33 H 0.96993 * 119.99726 * 184.99839 * 14 13 11 34 34 H 1.09000 * 117.49860 * 215.00408 * 19 10 9 35 35 H 1.09001 * 117.49806 * 0.02640 * 19 10 9 36 36 H 1.09005 * 117.49536 * 359.97309 * 20 10 9 37 37 H 1.08996 * 117.50059 * 144.97331 * 20 10 9 38 38 H 1.08000 * 120.05146 * 179.72233 * 21 5 4 39 39 H 1.08998 * 109.46821 * 180.02562 * 24 23 22 40 40 H 1.09006 * 109.46808 * 299.99378 * 24 23 22 41 41 H 1.09001 * 109.47459 * 59.99754 * 24 23 22 42 42 H 1.09001 * 109.46666 * 270.01853 * 26 25 22 43 43 H 1.08991 * 109.47163 * 30.01939 * 26 25 22 44 44 H 1.08999 * 109.46834 * 150.02289 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2907 2.3719 0.0005 5 6 1.9253 3.6148 0.0011 6 6 1.1237 4.8561 0.0011 7 8 -0.0860 4.7978 0.0933 8 8 1.7347 6.0523 -0.1010 9 6 0.8972 7.2325 0.0187 10 6 1.7381 8.4833 -0.2446 11 6 2.4931 8.4962 -1.5488 12 1 3.4708 8.9520 -1.6022 13 6 1.9384 7.9212 -2.6723 14 7 0.7885 7.2883 -2.5876 15 14 2.8197 8.0410 -4.3150 16 1 3.7306 6.8790 -4.4739 17 1 1.8207 8.0407 -5.4139 18 1 3.6081 9.2984 -4.3631 19 6 1.1994 9.8185 0.2731 20 6 2.3973 9.1579 0.9601 21 6 3.3193 3.6819 -0.0044 22 6 4.0667 2.5158 -0.0005 23 8 5.4242 2.5800 -0.0011 24 6 6.0122 3.8824 -0.0009 25 6 3.4315 1.2824 -0.0005 26 6 4.2490 0.0164 -0.0016 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2121 2.3154 0.0014 31 1 0.4790 7.2809 1.0241 32 1 0.0879 7.1790 -0.7094 33 1 0.4336 6.8220 -3.3604 34 1 1.3912 10.7063 -0.3296 35 1 0.2462 9.8057 0.8016 36 1 2.2316 8.7109 1.9403 37 1 3.3773 9.6107 0.8095 38 1 3.8145 4.6417 -0.0085 39 1 7.0983 3.7907 -0.0019 40 1 5.6930 4.4252 -0.8908 41 1 5.6937 4.4248 0.8893 42 1 4.4456 -0.2882 -1.0296 43 1 5.1939 0.1937 0.5118 44 1 3.6986 -0.7719 0.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174735341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:38 Heat of formation + Delta-G solvation = -120.824072 kcal Electronic energy + Delta-G solvation = -27577.992107 eV Core-core repulsion = 23654.969827 eV Total energy + Delta-G solvation = -3923.022280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93550 -40.91302 -40.04552 -38.62108 -37.35864 -36.76298 -34.21035 -34.06463 -30.76973 -29.20242 -28.74926 -28.22488 -27.69745 -27.13815 -23.93727 -23.02453 -22.90077 -21.89608 -21.10506 -19.69703 -18.69967 -18.19124 -17.58650 -17.33579 -17.24755 -17.04945 -16.97020 -16.47625 -16.46885 -16.42590 -15.67242 -15.32106 -14.88077 -14.35179 -14.33234 -13.95127 -13.84951 -13.59294 -13.38293 -13.33127 -13.04282 -12.91984 -12.74441 -12.62491 -12.48269 -12.43943 -12.33795 -12.18619 -12.13820 -11.77698 -11.76133 -11.40856 -11.21242 -10.91876 -10.69888 -10.19230 -9.45003 -9.31781 -8.01060 -6.21123 -0.46361 0.22792 1.39192 1.41583 1.50724 1.53320 1.75346 1.93086 2.39854 2.58169 2.62943 3.01505 3.45323 3.63522 3.73562 3.82953 3.93120 4.09064 4.22406 4.29186 4.35792 4.37856 4.39401 4.40009 4.47167 4.58057 4.70319 4.72958 4.73937 4.77606 4.81682 4.86166 4.90853 4.98052 5.09960 5.15244 5.19420 5.26213 5.41845 5.44347 5.51208 5.74609 5.84322 6.16291 6.24455 6.31040 6.75271 6.91839 7.42972 8.90421 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004258 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.491809 B = 6574.689191 C = 7060.759515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.308 6.308 3 C 0.152 3.848 4 C -0.185 4.185 5 C -0.063 4.063 6 C 0.497 3.503 7 O -0.545 6.545 8 O -0.323 6.323 9 C 0.126 3.874 10 C 0.005 3.995 11 C -0.492 4.492 12 H 0.059 0.941 13 C 0.028 3.972 14 N -0.906 5.906 15 Si 0.951 3.049 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.187 4.187 20 C -0.185 4.185 21 C -0.186 4.186 22 C 0.150 3.850 23 O -0.309 6.309 24 C 0.016 3.984 25 C -0.126 4.126 26 C -0.091 4.091 27 H 0.135 0.865 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.144 0.856 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.256 0.744 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 -13.816 6.095 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.222 6.222 3 C 0.106 3.894 4 C -0.204 4.204 5 C -0.065 4.065 6 C 0.343 3.657 7 O -0.438 6.438 8 O -0.237 6.237 9 C 0.052 3.948 10 C 0.004 3.996 11 C -0.529 4.529 12 H 0.077 0.923 13 C -0.171 4.171 14 N -0.544 5.544 15 Si 0.777 3.223 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.225 4.225 20 C -0.222 4.222 21 C -0.205 4.205 22 C 0.104 3.896 23 O -0.222 6.222 24 C -0.078 4.078 25 C -0.128 4.128 26 C -0.147 4.147 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.047 0.953 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.955 -14.153 5.969 16.474 hybrid contribution -0.574 1.042 -0.944 1.518 sum 5.381 -13.111 5.026 15.037 Atomic orbital electron populations 1.23424 0.76273 1.06130 1.02036 1.86038 1.23241 1.24627 1.88260 1.18147 0.90953 0.84235 0.96031 1.21222 1.01245 0.90292 1.07665 1.18714 0.93091 0.90158 1.04513 1.21521 0.86301 0.85435 0.72438 1.90692 1.16382 1.88636 1.48086 1.86477 1.42253 1.14281 1.80718 1.22668 0.93996 0.80657 0.97461 1.19064 0.98559 0.88456 0.93503 1.20677 1.02476 1.37408 0.92387 0.92260 1.25630 0.95196 0.94418 1.01875 1.69949 1.19757 1.34093 1.30642 0.85653 0.78278 0.78788 0.79608 1.20337 1.21336 1.18763 1.23005 0.96932 0.98042 1.04471 1.22971 0.96711 1.05848 0.96653 1.21518 0.93047 0.99303 1.06606 1.18296 0.83528 0.91982 0.95831 1.86020 1.15311 1.32704 1.88184 1.23407 1.00431 0.81867 1.02083 1.18865 0.90815 0.95260 1.07837 1.20501 0.98885 0.92133 1.03188 0.84727 0.92095 0.92578 0.83853 0.95316 0.89325 0.93402 0.89682 0.90040 0.89516 0.89446 0.83830 0.84760 0.92935 0.91909 0.90471 0.90305 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.31 -7.31 9.52 -92.47 -0.88 -8.19 16 3 C 0.15 4.36 6.65 22.45 0.15 4.51 16 4 C -0.19 -6.19 8.58 22.65 0.19 -5.99 16 5 C -0.06 -2.46 5.87 -20.12 -0.12 -2.58 16 6 C 0.50 23.20 7.88 70.34 0.55 23.75 16 7 O -0.54 -27.36 16.05 19.96 0.32 -27.04 16 8 O -0.32 -16.07 8.99 -56.19 -0.50 -16.58 16 9 C 0.13 6.37 4.45 71.98 0.32 6.69 16 10 C 0.00 0.22 2.21 -52.92 -0.12 0.11 16 11 C -0.49 -26.26 8.79 25.60 0.22 -26.03 16 12 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 13 C 0.03 1.53 5.35 84.65 0.45 1.99 16 14 N -0.91 -51.55 10.16 21.45 0.22 -51.34 16 15 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 19 C -0.19 -7.96 9.96 30.62 0.30 -7.66 16 20 C -0.18 -7.53 9.92 30.62 0.30 -7.23 16 21 C -0.19 -6.45 8.60 22.65 0.19 -6.25 16 22 C 0.15 4.46 6.65 22.45 0.15 4.60 16 23 O -0.31 -7.92 9.52 -92.49 -0.88 -8.80 16 24 C 0.02 0.34 9.81 113.37 1.11 1.45 16 25 C -0.13 -3.48 5.91 -19.62 -0.12 -3.60 16 26 C -0.09 -1.88 9.56 71.24 0.68 -1.20 16 27 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.06 1.06 7.65 -2.39 -0.02 1.04 16 29 H 0.06 1.04 7.66 -2.38 -0.02 1.02 16 30 H 0.14 4.65 5.88 -2.91 -0.02 4.63 16 31 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16 32 H 0.09 5.07 5.76 -2.39 -0.01 5.06 16 33 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 34 H 0.08 3.57 8.14 -2.39 -0.02 3.56 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.20 16 36 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 37 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.14 5.07 5.84 -2.91 -0.02 5.05 16 39 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.23 7.65 -2.38 -0.02 1.21 16 41 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.51 7.52 -2.39 -0.02 1.49 16 44 H 0.08 1.50 7.52 -2.39 -0.02 1.48 16 Total: -1.00 -66.02 369.44 6.72 -59.30 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 1.01 Total: 23.63 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.40 Total: -16.05 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.22 Total: -51.34 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -1.95 Total: -60.62 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -66.02 6.72 -59.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.520 kcal (2) G-P(sol) polarization free energy of solvation -66.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds