Wall clock time and date at job start Tue Mar 31 2020 12:54:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.89997 * 2 1
4 4 C 1.54375 * 109.83187 * 120.93671 * 2 1 3
5 5 C 1.55306 * 102.25400 * 98.15237 * 4 2 1
6 6 C 1.54948 * 100.93822 * 34.13571 * 5 4 2
7 7 H 1.08999 * 110.31011 * 82.57571 * 6 5 4
8 8 C 1.53008 * 110.30631 * 204.63867 * 6 5 4
9 9 O 1.45203 * 109.46953 * 183.61154 * 8 6 5
10 10 C 1.34755 * 116.99614 * 180.02562 * 9 8 6
11 11 O 1.21514 * 120.00366 * 359.97438 * 10 9 8
12 12 C 1.47398 * 119.99525 * 180.02562 * 10 9 8
13 13 C 1.39725 * 120.20763 * 0.18122 * 12 10 9
14 14 C 1.37803 * 119.91575 * 180.25445 * 13 12 10
15 15 C 1.38586 * 120.33382 * 359.79680 * 14 13 12
16 16 C 1.38027 * 120.41309 * 359.97438 * 15 14 13
17 17 C 1.38837 * 120.07747 * 359.97438 * 16 15 14
18 18 O 1.35504 * 120.16697 * 179.97438 * 17 16 15
19 19 C 1.34807 * 117.00034 * 354.40020 * 18 17 16
20 20 H 1.08001 * 120.00088 * 5.06547 * 19 18 17
21 21 C 1.38700 * 119.99955 * 185.05946 * 19 18 17
22 22 N 1.31509 * 120.00379 * 0.02562 * 21 19 18
23 23 Si 1.86803 * 119.99820 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.47348 * 359.97438 * 23 21 19
25 25 H 1.48501 * 109.47209 * 120.00268 * 23 21 19
26 26 H 1.48500 * 109.47255 * 239.99790 * 23 21 19
27 27 O 1.43384 * 109.88546 * 239.13373 * 2 1 3
28 28 H 1.09000 * 109.47027 * 299.06913 * 1 2 3
29 29 H 1.09004 * 109.46771 * 59.06447 * 1 2 3
30 30 H 1.08995 * 109.47043 * 179.06179 * 1 2 3
31 31 H 1.08993 * 109.47166 * 180.93416 * 3 2 1
32 32 H 1.09003 * 109.47054 * 300.93911 * 3 2 1
33 33 H 1.08998 * 109.46609 * 60.93363 * 3 2 1
34 34 H 1.09000 * 110.84530 * 339.96571 * 4 2 1
35 35 H 1.08993 * 111.02475 * 216.42540 * 4 2 1
36 36 H 1.08993 * 111.12618 * 276.21367 * 5 4 2
37 37 H 1.09003 * 111.12378 * 152.05387 * 5 4 2
38 38 H 1.08996 * 109.47358 * 63.60916 * 8 6 5
39 39 H 1.08999 * 109.47028 * 303.60613 * 8 6 5
40 40 H 1.08003 * 120.04234 * 0.02562 * 13 12 10
41 41 H 1.08002 * 119.83304 * 179.76378 * 14 13 12
42 42 H 1.07996 * 119.79937 * 179.97438 * 15 14 13
43 43 H 1.07995 * 119.96452 * 179.97438 * 16 15 14
44 44 H 0.97001 * 120.00841 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0508 1.4386 0.0000
4 6 2.0537 -0.7466 1.2456
5 6 2.3680 -2.1570 0.6766
6 6 2.8407 -1.7981 -0.7547
7 1 3.8904 -1.5047 -0.7441
8 6 2.6317 -2.9858 -1.6964
9 8 3.1581 -2.6604 -3.0100
10 6 3.0515 -3.6068 -3.9633
11 8 2.5334 -4.6749 -3.7040
12 6 3.5645 -3.3467 -5.3204
13 6 4.1654 -2.1218 -5.6221
14 6 4.6382 -1.8831 -6.8943
15 6 4.5248 -2.8539 -7.8767
16 6 3.9379 -4.0705 -7.5925
17 6 3.4566 -4.3296 -6.3163
18 8 2.8796 -5.5230 -6.0354
19 6 2.6980 -6.3726 -7.0662
20 1 3.0809 -6.1240 -8.0449
21 6 2.0192 -7.5662 -6.8697
22 7 1.5525 -7.8689 -5.6781
23 14 1.7681 -8.7438 -8.2979
24 1 2.3834 -8.1740 -9.5234
25 1 2.4064 -10.0471 -7.9829
26 1 0.3143 -8.9463 -8.5228
27 8 2.0177 -0.6917 -1.1574
28 1 -0.3633 0.4993 0.8982
29 1 -0.3633 0.5283 -0.8815
30 1 -0.3633 -1.0275 -0.0168
31 1 3.1406 1.4305 -0.0168
32 1 1.6776 1.9601 -0.8815
33 1 1.7050 1.9501 0.8982
34 1 1.2851 -0.8017 2.0164
35 1 2.9565 -0.2747 1.6335
36 1 1.4730 -2.7785 0.6505
37 1 3.1636 -2.6409 1.2433
38 1 1.5667 -3.2038 -1.7755
39 1 3.1528 -3.8581 -1.3021
40 1 4.2559 -1.3618 -4.8602
41 1 5.0991 -0.9345 -7.1270
42 1 4.8980 -2.6575 -8.8710
43 1 3.8529 -4.8216 -8.3638
44 1 1.0782 -8.7037 -5.5405
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000190608116.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:54:26
Heat of formation + Delta-G solvation = -137.039317 kcal
Electronic energy + Delta-G solvation = -26868.428501 eV
Core-core repulsion = 22944.703075 eV
Total energy + Delta-G solvation = -3923.725426 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.18208 -39.62168 -38.53353 -36.39178 -35.54781 -33.46481 -32.39282 -32.34599
-30.68242 -28.95658 -28.39837 -27.52336 -25.46951 -24.17779 -22.90349 -21.57971
-21.40966 -20.22307 -20.01906 -18.04650 -17.47490 -17.01139 -16.49570 -15.97478
-15.46778 -15.39489 -14.73338 -14.54468 -14.37905 -13.96301 -13.88483 -13.72348
-13.60934 -13.44725 -13.10990 -12.74501 -12.58776 -12.36906 -12.13038 -11.92608
-11.90503 -11.74788 -11.69389 -11.34419 -11.28719 -11.08790 -10.93603 -10.92272
-10.78668 -10.74150 -10.46141 -10.03066 -9.71291 -9.59022 -9.20688 -8.92055
-8.29294 -7.35398 -6.49435 -4.09197 1.64014 2.33616 3.09659 3.10915
3.16508 3.24574 3.50223 3.58314 3.90102 4.25037 4.55850 4.57417
4.59638 4.84870 4.95615 4.99183 5.03308 5.16552 5.22854 5.33944
5.37397 5.41866 5.48539 5.53136 5.55379 5.62425 5.64230 5.70005
5.74205 5.77218 5.87647 5.97595 6.02946 6.12393 6.13941 6.17015
6.60612 6.68131 6.91939 7.02315 7.07103 7.14763 7.25653 7.33555
7.68691 7.89263 8.77420 8.91027 9.60782 10.64501
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.016134 B = 0.003116 C = 0.002736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1735.072371 B = 8983.087698 C =10231.802473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.096 3.904
3 C -0.153 4.153
4 C -0.144 4.144
5 C -0.149 4.149
6 C 0.085 3.915
7 H 0.080 0.920
8 C 0.072 3.928
9 O -0.359 6.359
10 C 0.498 3.502
11 O -0.479 6.479
12 C -0.215 4.215
13 C -0.014 4.014
14 C -0.234 4.234
15 C -0.044 4.044
16 C -0.240 4.240
17 C 0.192 3.808
18 O -0.126 6.126
19 C -0.403 4.403
20 H 0.097 0.903
21 C 0.044 3.956
22 N -0.833 5.833
23 Si 0.943 3.057
24 H -0.265 1.265
25 H -0.274 1.274
26 H -0.274 1.274
27 O -0.357 6.357
28 H 0.064 0.936
29 H 0.063 0.937
30 H 0.060 0.940
31 H 0.059 0.941
32 H 0.063 0.937
33 H 0.063 0.937
34 H 0.083 0.917
35 H 0.078 0.922
36 H 0.083 0.917
37 H 0.087 0.913
38 H 0.073 0.927
39 H 0.079 0.921
40 H 0.125 0.875
41 H 0.112 0.888
42 H 0.112 0.888
43 H 0.134 0.866
44 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.058 14.162 10.509 17.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.056 3.944
3 C -0.210 4.210
4 C -0.182 4.182
5 C -0.187 4.187
6 C 0.028 3.972
7 H 0.098 0.902
8 C -0.003 4.003
9 O -0.277 6.277
10 C 0.343 3.657
11 O -0.366 6.366
12 C -0.218 4.218
13 C -0.033 4.033
14 C -0.253 4.253
15 C -0.062 4.062
16 C -0.259 4.259
17 C 0.132 3.868
18 O -0.025 6.025
19 C -0.478 4.478
20 H 0.114 0.886
21 C -0.164 4.164
22 N -0.464 5.464
23 Si 0.767 3.233
24 H -0.189 1.189
25 H -0.200 1.200
26 H -0.200 1.200
27 O -0.277 6.277
28 H 0.083 0.917
29 H 0.082 0.918
30 H 0.079 0.921
31 H 0.078 0.922
32 H 0.082 0.918
33 H 0.082 0.918
34 H 0.101 0.899
35 H 0.097 0.903
36 H 0.102 0.898
37 H 0.106 0.894
38 H 0.091 0.909
39 H 0.097 0.903
40 H 0.143 0.857
41 H 0.130 0.870
42 H 0.130 0.870
43 H 0.152 0.848
44 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 1.593 13.541 10.757 17.367
hybrid contribution -0.119 -0.737 -0.487 0.891
sum 1.475 12.804 10.270 16.480
Atomic orbital electron populations
1.22078 0.94046 1.02698 1.02222 1.22134 0.94271 0.92637 0.85319
1.22088 1.01553 0.95132 1.02243 1.23185 1.02068 0.95096 0.97805
1.23236 1.02825 0.97719 0.94934 1.22985 0.95729 0.86460 0.92063
0.90175 1.23004 1.00188 0.96153 0.80953 1.86543 1.75668 1.45311
1.20209 1.21104 0.77576 0.81874 0.85140 1.90994 1.40039 1.24502
1.81044 1.18045 1.16649 0.96638 0.90428 1.20985 0.92024 0.93976
0.96284 1.20542 1.10495 1.00347 0.93959 1.20964 0.94525 0.92649
0.98099 1.21108 1.08139 0.99450 0.97204 1.19237 0.90282 0.85731
0.91507 1.84144 1.63551 1.19499 1.35264 1.21576 1.37581 0.99058
0.89598 0.88615 1.25411 0.95487 0.97285 0.98170 1.70124 1.31902
1.23244 1.21136 0.85631 0.78615 0.79478 0.79599 1.18891 1.19974
1.19964 1.88623 1.66948 1.42922 1.29217 0.91733 0.91775 0.92056
0.92153 0.91788 0.91765 0.89872 0.90309 0.89829 0.89422 0.90905
0.90295 0.85682 0.86989 0.86981 0.84842 0.91824
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 8.73 37.16 0.32 -1.14 16
2 C 0.10 0.99 1.27 -89.90 -0.11 0.88 16
3 C -0.15 -1.35 8.75 37.16 0.33 -1.03 16
4 C -0.14 -1.18 6.08 -24.79 -0.15 -1.33 16
5 C -0.15 -1.42 6.57 -24.48 -0.16 -1.58 16
6 C 0.09 1.09 3.73 -25.70 -0.10 1.00 16
7 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
8 C 0.07 1.17 5.18 37.16 0.19 1.37 16
9 O -0.36 -7.11 9.47 -42.06 -0.40 -7.51 16
10 C 0.50 11.81 7.89 34.46 0.27 12.08 16
11 O -0.48 -13.28 14.96 -26.59 -0.40 -13.67 16
12 C -0.21 -4.97 5.89 -104.82 -0.62 -5.59 16
13 C -0.01 -0.27 9.61 -39.19 -0.38 -0.65 16
14 C -0.23 -4.06 10.02 -39.61 -0.40 -4.45 16
15 C -0.04 -0.79 10.03 -39.53 -0.40 -1.19 16
16 C -0.24 -5.20 9.16 -39.44 -0.36 -5.56 16
17 C 0.19 4.85 6.66 -38.57 -0.26 4.59 16
18 O -0.13 -3.74 7.84 -20.99 -0.16 -3.91 16
19 C -0.40 -11.36 9.49 30.90 0.29 -11.06 16
20 H 0.10 2.45 5.21 -52.49 -0.27 2.17 16
21 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16
22 N -0.83 -24.93 13.67 55.48 0.76 -24.18 16
23 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16
24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16
25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
27 O -0.36 -5.08 10.37 -35.45 -0.37 -5.45 16
28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
34 H 0.08 0.56 7.82 -51.93 -0.41 0.16 16
35 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16
36 H 0.08 0.80 8.06 -51.93 -0.42 0.39 16
37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
40 H 0.13 2.11 7.61 -52.48 -0.40 1.71 16
41 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16
42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16
43 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16
44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
LS Contribution 369.76 15.07 5.57 5.57
Total: -1.00 -34.37 369.76 -8.05 -42.41
By element:
Atomic # 1 Polarization: 10.30 SS G_CDS: -6.41 Total: 3.89 kcal
Atomic # 6 Polarization: -10.92 SS G_CDS: -1.62 Total: -12.54 kcal
Atomic # 7 Polarization: -24.93 SS G_CDS: 0.76 Total: -24.18 kcal
Atomic # 8 Polarization: -29.21 SS G_CDS: -1.33 Total: -30.54 kcal
Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -34.37 -8.05 -42.41 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000190608116.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -94.625 kcal
(2) G-P(sol) polarization free energy of solvation -34.368 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.994 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds