Wall clock time and date at job start Tue Mar 31 2020 12:54:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.89997 * 2 1
4 4 C 1.54375 * 109.83187 * 120.93671 * 2 1 3
5 5 C 1.55306 * 102.25400 * 98.15237 * 4 2 1
6 6 C 1.54948 * 100.93822 * 34.13571 * 5 4 2
7 7 H 1.08999 * 110.31011 * 82.57571 * 6 5 4
8 8 C 1.53008 * 110.30631 * 204.63867 * 6 5 4
9 9 O 1.45203 * 109.46953 * 183.61154 * 8 6 5
10 10 C 1.34755 * 116.99614 * 180.02562 * 9 8 6
11 11 O 1.21514 * 120.00366 * 359.97438 * 10 9 8
12 12 C 1.47398 * 119.99525 * 180.02562 * 10 9 8
13 13 C 1.39725 * 120.20763 * 0.18122 * 12 10 9
14 14 C 1.37803 * 119.91575 * 180.25445 * 13 12 10
15 15 C 1.38586 * 120.33382 * 359.79680 * 14 13 12
16 16 C 1.38027 * 120.41309 * 359.97438 * 15 14 13
17 17 C 1.38837 * 120.07747 * 359.97438 * 16 15 14
18 18 O 1.35504 * 120.16697 * 179.97438 * 17 16 15
19 19 C 1.34807 * 117.00034 * 354.40020 * 18 17 16
20 20 H 1.08001 * 120.00088 * 5.06547 * 19 18 17
21 21 C 1.38700 * 119.99955 * 185.05946 * 19 18 17
22 22 N 1.31509 * 120.00379 * 0.02562 * 21 19 18
23 23 Si 1.86803 * 119.99820 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.47348 * 359.97438 * 23 21 19
25 25 H 1.48501 * 109.47209 * 120.00268 * 23 21 19
26 26 H 1.48500 * 109.47255 * 239.99790 * 23 21 19
27 27 O 1.43384 * 109.88546 * 239.13373 * 2 1 3
28 28 H 1.09000 * 109.47027 * 299.06913 * 1 2 3
29 29 H 1.09004 * 109.46771 * 59.06447 * 1 2 3
30 30 H 1.08995 * 109.47043 * 179.06179 * 1 2 3
31 31 H 1.08993 * 109.47166 * 180.93416 * 3 2 1
32 32 H 1.09003 * 109.47054 * 300.93911 * 3 2 1
33 33 H 1.08998 * 109.46609 * 60.93363 * 3 2 1
34 34 H 1.09000 * 110.84530 * 339.96571 * 4 2 1
35 35 H 1.08993 * 111.02475 * 216.42540 * 4 2 1
36 36 H 1.08993 * 111.12618 * 276.21367 * 5 4 2
37 37 H 1.09003 * 111.12378 * 152.05387 * 5 4 2
38 38 H 1.08996 * 109.47358 * 63.60916 * 8 6 5
39 39 H 1.08999 * 109.47028 * 303.60613 * 8 6 5
40 40 H 1.08003 * 120.04234 * 0.02562 * 13 12 10
41 41 H 1.08002 * 119.83304 * 179.76378 * 14 13 12
42 42 H 1.07996 * 119.79937 * 179.97438 * 15 14 13
43 43 H 1.07995 * 119.96452 * 179.97438 * 16 15 14
44 44 H 0.97001 * 120.00841 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0508 1.4386 0.0000
4 6 2.0537 -0.7466 1.2456
5 6 2.3680 -2.1570 0.6766
6 6 2.8407 -1.7981 -0.7547
7 1 3.8904 -1.5047 -0.7441
8 6 2.6317 -2.9858 -1.6964
9 8 3.1581 -2.6604 -3.0100
10 6 3.0515 -3.6068 -3.9633
11 8 2.5334 -4.6749 -3.7040
12 6 3.5645 -3.3467 -5.3204
13 6 4.1654 -2.1218 -5.6221
14 6 4.6382 -1.8831 -6.8943
15 6 4.5248 -2.8539 -7.8767
16 6 3.9379 -4.0705 -7.5925
17 6 3.4566 -4.3296 -6.3163
18 8 2.8796 -5.5230 -6.0354
19 6 2.6980 -6.3726 -7.0662
20 1 3.0809 -6.1240 -8.0449
21 6 2.0192 -7.5662 -6.8697
22 7 1.5525 -7.8689 -5.6781
23 14 1.7681 -8.7438 -8.2979
24 1 2.3834 -8.1740 -9.5234
25 1 2.4064 -10.0471 -7.9829
26 1 0.3143 -8.9463 -8.5228
27 8 2.0177 -0.6917 -1.1574
28 1 -0.3633 0.4993 0.8982
29 1 -0.3633 0.5283 -0.8815
30 1 -0.3633 -1.0275 -0.0168
31 1 3.1406 1.4305 -0.0168
32 1 1.6776 1.9601 -0.8815
33 1 1.7050 1.9501 0.8982
34 1 1.2851 -0.8017 2.0164
35 1 2.9565 -0.2747 1.6335
36 1 1.4730 -2.7785 0.6505
37 1 3.1636 -2.6409 1.2433
38 1 1.5667 -3.2038 -1.7755
39 1 3.1528 -3.8581 -1.3021
40 1 4.2559 -1.3618 -4.8602
41 1 5.0991 -0.9345 -7.1270
42 1 4.8980 -2.6575 -8.8710
43 1 3.8529 -4.8216 -8.3638
44 1 1.0782 -8.7037 -5.5405
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000190608116.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:54:26
Heat of formation + Delta-G solvation = -158.076230 kcal
Electronic energy + Delta-G solvation = -26869.340730 eV
Core-core repulsion = 22944.703075 eV
Total energy + Delta-G solvation = -3924.637655 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.62897 -40.93147 -40.26443 -38.14799 -37.31888 -34.41827 -34.37415 -33.28181
-32.30869 -30.65845 -29.53546 -28.24217 -27.45710 -25.52298 -24.21411 -23.23750
-22.46164 -21.81662 -20.95075 -19.92413 -19.24501 -18.39659 -18.00392 -17.53263
-16.93364 -16.47571 -16.34393 -16.14782 -15.78043 -15.60540 -15.34187 -15.13038
-14.72165 -14.52335 -14.34520 -14.27536 -13.91442 -13.58708 -13.50011 -13.19859
-13.04966 -12.93004 -12.72925 -12.70188 -12.58340 -12.49034 -12.41255 -12.22555
-12.09449 -11.77492 -11.66648 -11.59218 -11.46060 -11.05497 -10.87817 -10.54742
-9.94041 -9.13378 -8.49307 -6.20622 -0.06217 0.67414 1.32796 1.43325
1.52953 1.67514 1.72565 2.13511 2.65670 2.80997 3.13400 3.35478
3.43856 3.60464 3.84372 3.94360 3.96195 4.03196 4.08075 4.17654
4.22957 4.29754 4.32568 4.38588 4.50736 4.58605 4.68079 4.75455
4.79006 4.85256 4.91920 4.96377 4.98637 5.03505 5.05281 5.11389
5.14138 5.29322 5.35972 5.40228 5.46357 5.58994 5.64830 5.92439
6.10967 6.17016 6.89047 6.96442 7.70652 8.71215
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.016134 B = 0.003116 C = 0.002736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1735.072371 B = 8983.087698 C =10231.802473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.082 3.918
3 C -0.149 4.149
4 C -0.134 4.134
5 C -0.146 4.146
6 C 0.089 3.911
7 H 0.092 0.908
8 C 0.064 3.936
9 O -0.350 6.350
10 C 0.497 3.503
11 O -0.532 6.532
12 C -0.239 4.239
13 C -0.013 4.013
14 C -0.203 4.203
15 C -0.026 4.026
16 C -0.255 4.255
17 C 0.158 3.842
18 O -0.188 6.188
19 C -0.428 4.428
20 H 0.112 0.888
21 C -0.021 4.021
22 N -0.904 5.904
23 Si 1.025 2.975
24 H -0.243 1.243
25 H -0.268 1.268
26 H -0.269 1.269
27 O -0.391 6.391
28 H 0.092 0.908
29 H 0.050 0.950
30 H 0.047 0.953
31 H 0.060 0.940
32 H 0.051 0.949
33 H 0.089 0.911
34 H 0.103 0.897
35 H 0.097 0.903
36 H 0.076 0.924
37 H 0.109 0.891
38 H 0.053 0.947
39 H 0.081 0.919
40 H 0.151 0.849
41 H 0.166 0.834
42 H 0.163 0.837
43 H 0.133 0.867
44 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.928 17.475 9.840 20.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.043 3.957
3 C -0.206 4.206
4 C -0.171 4.171
5 C -0.184 4.184
6 C 0.032 3.968
7 H 0.109 0.891
8 C -0.010 4.010
9 O -0.267 6.267
10 C 0.345 3.655
11 O -0.423 6.423
12 C -0.241 4.241
13 C -0.031 4.031
14 C -0.222 4.222
15 C -0.044 4.044
16 C -0.274 4.274
17 C 0.103 3.897
18 O -0.090 6.090
19 C -0.503 4.503
20 H 0.130 0.870
21 C -0.220 4.220
22 N -0.539 5.539
23 Si 0.843 3.157
24 H -0.166 1.166
25 H -0.193 1.193
26 H -0.195 1.195
27 O -0.312 6.312
28 H 0.111 0.889
29 H 0.069 0.931
30 H 0.067 0.933
31 H 0.079 0.921
32 H 0.070 0.930
33 H 0.108 0.892
34 H 0.121 0.879
35 H 0.115 0.885
36 H 0.095 0.905
37 H 0.128 0.872
38 H 0.071 0.929
39 H 0.099 0.901
40 H 0.169 0.831
41 H 0.183 0.817
42 H 0.180 0.820
43 H 0.150 0.850
44 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 3.506 16.948 10.084 20.031
hybrid contribution -0.551 -1.317 -0.237 1.447
sum 2.955 15.631 9.847 18.709
Atomic orbital electron populations
1.22109 0.93924 1.02044 1.02994 1.22469 0.94551 0.93453 0.85200
1.22074 1.01541 0.94062 1.02957 1.23198 1.03411 0.93405 0.97090
1.23272 1.03223 0.98965 0.92890 1.23029 0.96346 0.84929 0.92524
0.89056 1.23365 0.98922 0.98751 0.79945 1.86524 1.75208 1.43867
1.21117 1.21463 0.76409 0.81500 0.86175 1.90974 1.42474 1.26762
1.82067 1.18497 1.17615 0.98120 0.89901 1.21363 0.90928 0.92556
0.98223 1.21213 1.06963 1.01736 0.92248 1.21539 0.91739 0.90547
1.00560 1.21304 1.08987 1.01438 0.95719 1.19957 0.90518 0.85476
0.93740 1.84146 1.66898 1.21539 1.36462 1.22151 1.38256 0.99639
0.90284 0.87046 1.26813 0.94761 0.99103 1.01373 1.70307 1.34912
1.24429 1.24277 0.84464 0.78700 0.76529 0.76013 1.16608 1.19280
1.19451 1.88585 1.67340 1.43400 1.31836 0.88948 0.93101 0.93347
0.92074 0.92972 0.89236 0.87884 0.88489 0.90517 0.87225 0.92860
0.90055 0.83101 0.81677 0.81986 0.84967 0.91837
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.80 8.73 71.98 0.63 -2.17 16
2 C 0.08 1.57 1.27 -10.33 -0.01 1.56 16
3 C -0.15 -2.31 8.75 71.98 0.63 -1.68 16
4 C -0.13 -1.83 6.08 31.85 0.19 -1.64 16
5 C -0.15 -2.58 6.57 32.05 0.21 -2.37 16
6 C 0.09 2.26 3.73 31.26 0.12 2.38 16
7 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
8 C 0.06 2.22 5.18 71.98 0.37 2.59 16
9 O -0.35 -14.34 9.47 -55.29 -0.52 -14.87 16
10 C 0.50 24.97 7.89 70.23 0.55 25.52 16
11 O -0.53 -32.10 14.96 26.78 0.40 -31.70 16
12 C -0.24 -11.29 5.89 -20.00 -0.12 -11.41 16
13 C -0.01 -0.45 9.61 22.53 0.22 -0.23 16
14 C -0.20 -5.94 10.02 22.25 0.22 -5.72 16
15 C -0.03 -0.82 10.03 22.30 0.22 -0.59 16
16 C -0.26 -10.90 9.16 22.36 0.20 -10.69 16
17 C 0.16 8.32 6.66 22.92 0.15 8.47 16
18 O -0.19 -11.99 7.84 1.09 0.01 -11.98 16
19 C -0.43 -25.60 9.49 67.93 0.64 -24.96 16
20 H 0.11 5.92 5.21 -2.91 -0.02 5.91 16
21 C -0.02 -1.23 5.49 84.85 0.47 -0.76 16
22 N -0.90 -58.44 13.67 21.62 0.30 -58.14 16
23 Si 1.02 43.55 29.55 68.60 2.03 45.58 16
24 H -0.24 -9.28 7.11 99.48 0.71 -8.57 16
25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16
26 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16
27 O -0.39 -11.03 10.37 -148.77 -1.54 -12.57 16
28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
34 H 0.10 1.04 7.82 -2.39 -0.02 1.02 16
35 H 0.10 1.01 7.86 -2.39 -0.02 1.00 16
36 H 0.08 1.46 8.06 -2.39 -0.02 1.44 16
37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16
38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16
39 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16
40 H 0.15 4.57 7.61 -2.91 -0.02 4.54 16
41 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16
42 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16
43 H 0.13 5.58 5.64 -2.91 -0.02 5.56 16
44 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16
Total: -1.00 -85.28 369.76 6.37 -78.91
By element:
Atomic # 1 Polarization: 25.49 SS G_CDS: 1.00 Total: 26.48 kcal
Atomic # 6 Polarization: -26.41 SS G_CDS: 4.71 Total: -21.70 kcal
Atomic # 7 Polarization: -58.44 SS G_CDS: 0.30 Total: -58.14 kcal
Atomic # 8 Polarization: -69.46 SS G_CDS: -1.66 Total: -71.12 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal
Total: -85.28 6.37 -78.91 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000190608116.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.171 kcal
(2) G-P(sol) polarization free energy of solvation -85.276 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.447 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds