Wall clock time and date at job start Tue Mar 31 2020 12:19:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86810 * 119.99466 * 2 1
4 4 H 1.48505 * 109.46884 * 270.00059 * 3 2 1
5 5 H 1.48495 * 109.47070 * 29.99992 * 3 2 1
6 6 H 1.48500 * 109.46974 * 150.00094 * 3 2 1
7 7 C 1.37871 * 120.00483 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99979 * 173.55266 * 7 2 1
9 9 C 1.50698 * 119.99918 * 353.55359 * 7 2 1
10 10 C 1.53001 * 115.55210 * 85.40487 * 9 7 2
11 11 N 1.46502 * 109.47073 * 65.13586 * 10 9 7
12 12 C 1.34777 * 119.99723 * 178.28163 * 11 10 9
13 13 O 1.21276 * 120.00158 * 0.02562 * 12 11 10
14 14 C 1.50708 * 119.99896 * 180.02562 * 12 11 10
15 15 C 1.52992 * 109.47142 * 180.02562 * 14 12 11
16 16 S 1.81397 * 109.47024 * 180.02562 * 15 14 12
17 17 C 1.81409 * 102.99999 * 180.02562 * 16 15 14
18 18 C 1.50705 * 109.47079 * 180.02562 * 17 16 15
19 19 C 1.38230 * 119.61502 * 270.01961 * 18 17 16
20 20 C 1.38620 * 119.16097 * 179.74750 * 19 18 17
21 21 C 1.38677 * 118.41819 * 0.47331 * 20 19 18
22 22 C 1.38183 * 119.16377 * 359.50226 * 21 20 19
23 23 N 1.31850 * 119.61795 * 89.99714 * 18 17 16
24 24 C 1.53003 * 117.49864 * 231.06999 * 9 7 2
25 25 C 1.53001 * 117.49814 * 299.73154 * 9 7 2
26 26 H 0.97000 * 120.00650 * 5.06744 * 1 2 3
27 27 H 1.09003 * 109.46824 * 305.14108 * 10 9 7
28 28 H 1.08998 * 109.47252 * 185.14060 * 10 9 7
29 29 H 0.96998 * 120.00435 * 358.28969 * 11 10 9
30 30 H 1.09003 * 109.47060 * 59.99922 * 14 12 11
31 31 H 1.08994 * 109.47009 * 300.00203 * 14 12 11
32 32 H 1.08993 * 109.47390 * 59.99852 * 15 14 12
33 33 H 1.09006 * 109.47447 * 299.99574 * 15 14 12
34 34 H 1.08994 * 109.47153 * 59.99607 * 17 16 15
35 35 H 1.08998 * 109.46675 * 299.99546 * 17 16 15
36 36 H 1.08003 * 120.41668 * 359.95545 * 19 18 17
37 37 H 1.08002 * 120.79348 * 180.23162 * 20 19 18
38 38 H 1.08008 * 120.41738 * 179.78296 * 21 20 19
39 39 H 1.08000 * 119.61697 * 180.25386 * 22 21 20
40 40 H 1.08996 * 117.49807 * 215.00254 * 24 9 7
41 41 H 1.09005 * 117.49983 * 0.02944 * 24 9 7
42 42 H 1.08995 * 117.50011 * 359.97438 * 25 9 7
43 43 H 1.09000 * 117.49779 * 144.97724 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4964 2.0466 -1.4001
5 1 1.4464 2.6527 0.7000
6 1 3.5466 1.4404 0.7000
7 6 2.0046 -1.1939 -0.0005
8 1 3.0795 -1.1968 -0.1056
9 6 1.2583 -2.4950 0.1454
10 6 0.7022 -3.0860 -1.1517
11 7 1.8113 -3.4581 -2.0336
12 6 1.5601 -4.0344 -3.2258
13 8 0.4159 -4.2445 -3.5686
14 6 2.7010 -4.4178 -4.1328
15 6 2.1461 -5.0473 -5.4120
16 16 3.5194 -5.5094 -6.5034
17 6 2.6753 -6.2248 -7.9409
18 6 3.6982 -6.6656 -8.9561
19 6 4.1189 -5.7802 -9.9307
20 6 5.0640 -6.1939 -10.8565
21 6 5.5455 -7.4917 -10.7732
22 6 5.0783 -8.3202 -9.7709
23 7 4.1817 -7.8911 -8.9041
24 6 1.7474 -3.4738 1.2149
25 6 0.4420 -2.7017 1.4228
26 1 -0.4851 0.8367 -0.0742
27 1 0.0755 -2.3456 -1.6488
28 1 0.1077 -3.9703 -0.9225
29 1 2.7264 -3.2899 -1.7595
30 1 3.3445 -5.1354 -3.6237
31 1 3.2780 -3.5285 -4.3865
32 1 1.5029 -4.3294 -5.9209
33 1 1.5689 -5.9365 -5.1587
34 1 2.0194 -5.4769 -8.3865
35 1 2.0842 -7.0842 -7.6245
36 1 3.7188 -4.7777 -9.9682
37 1 5.4142 -5.5227 -11.6268
38 1 6.2799 -7.8489 -11.4801
39 1 5.4514 -9.3310 -9.6967
40 1 1.6729 -4.5386 0.9944
41 1 2.6086 -3.1765 1.8133
42 1 0.4450 -1.8969 2.1578
43 1 -0.4914 -3.2584 1.3391
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000431148424.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:01
Heat of formation + Delta-G solvation = 9.164095 kcal
Electronic energy + Delta-G solvation = -22670.502403 eV
Core-core repulsion = 19228.162455 eV
Total energy + Delta-G solvation = -3442.339948 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.49855 -39.16220 -36.74453 -33.44098 -33.31371 -32.71061 -32.66984 -31.99313
-28.21410 -26.78549 -25.43610 -23.89196 -23.73348 -22.38937 -21.21002 -19.74574
-19.24228 -17.33118 -16.95883 -16.71898 -16.34493 -15.95044 -15.80057 -15.61948
-14.98905 -14.71801 -14.56322 -14.06227 -13.84436 -13.81209 -13.56677 -13.21177
-12.99280 -12.75417 -12.42204 -12.33633 -11.91594 -11.84885 -11.60265 -11.26111
-11.02083 -10.95585 -10.54759 -10.31596 -10.29393 -10.17489 -9.81498 -9.70478
-9.40126 -9.25417 -8.99474 -8.52438 -8.31694 -8.11246 -7.79644 -6.10441
-4.19322 0.48997 0.89223 1.61602 2.39076 3.15156 3.23905 3.32034
3.33952 3.50941 3.80421 3.90506 4.26098 4.33213 4.47128 4.65873
4.72375 4.79319 4.96079 4.96913 5.01721 5.16815 5.21357 5.30615
5.38267 5.38968 5.63629 5.71583 5.74422 5.78400 5.89733 6.01075
6.28488 6.31181 6.44087 6.53928 6.67300 6.85433 7.06973 7.24308
7.40369 7.45735 7.61198 7.78772 8.24746 8.31078 8.80192 8.83672
9.47709 10.97310
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.021753 B = 0.002033 C = 0.001937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1286.872276 B =13768.239215 C =14449.511830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.874 5.874
2 C 0.073 3.927
3 Si 0.890 3.110
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.273 1.273
7 C -0.501 4.501
8 H 0.060 0.940
9 C 0.026 3.974
10 C 0.163 3.837
11 N -0.701 5.701
12 C 0.509 3.491
13 O -0.559 6.559
14 C -0.126 4.126
15 C -0.066 4.066
16 S -0.243 6.243
17 C -0.041 4.041
18 C 0.144 3.856
19 C -0.153 4.153
20 C -0.075 4.075
21 C -0.173 4.173
22 C 0.102 3.898
23 N -0.472 5.472
24 C -0.210 4.210
25 C -0.148 4.148
26 H 0.262 0.738
27 H 0.072 0.928
28 H 0.037 0.963
29 H 0.401 0.599
30 H 0.099 0.901
31 H 0.100 0.900
32 H 0.091 0.909
33 H 0.090 0.910
34 H 0.099 0.901
35 H 0.101 0.899
36 H 0.138 0.862
37 H 0.137 0.863
38 H 0.136 0.864
39 H 0.158 0.842
40 H 0.065 0.935
41 H 0.078 0.922
42 H 0.083 0.917
43 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.472 -12.575 -19.157 24.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.510 5.510
2 C -0.131 4.131
3 Si 0.718 3.282
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.198 1.198
7 C -0.538 4.538
8 H 0.078 0.922
9 C 0.025 3.975
10 C 0.040 3.960
11 N -0.349 5.349
12 C 0.293 3.707
13 O -0.439 6.439
14 C -0.167 4.167
15 C -0.215 4.215
16 S -0.014 6.014
17 C -0.190 4.190
18 C 0.006 3.994
19 C -0.175 4.175
20 C -0.101 4.101
21 C -0.194 4.194
22 C -0.056 4.056
23 N -0.181 5.181
24 C -0.248 4.248
25 C -0.186 4.186
26 H 0.072 0.928
27 H 0.091 0.909
28 H 0.056 0.944
29 H 0.235 0.765
30 H 0.117 0.883
31 H 0.119 0.881
32 H 0.109 0.891
33 H 0.109 0.891
34 H 0.118 0.882
35 H 0.120 0.880
36 H 0.156 0.844
37 H 0.154 0.846
38 H 0.154 0.846
39 H 0.175 0.825
40 H 0.084 0.916
41 H 0.097 0.903
42 H 0.102 0.898
43 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 9.237 -13.014 -18.459 24.401
hybrid contribution -0.130 1.508 -0.736 1.683
sum 9.107 -11.506 -19.195 24.162
Atomic orbital electron populations
1.69971 1.05906 1.26965 1.48180 1.24995 0.94813 0.98994 0.94290
0.86627 0.79940 0.83502 0.78175 1.20638 1.21161 1.19792 1.20332
0.92834 0.88573 1.52076 0.92157 1.19050 0.98676 0.93988 0.85770
1.21007 0.87317 0.96932 0.90743 1.45969 1.11612 1.59734 1.17578
1.20280 0.89925 0.78244 0.82283 1.90661 1.22828 1.55920 1.74518
1.21341 0.98150 1.02972 0.94236 1.23120 0.97245 1.04495 0.96630
1.86956 1.16574 1.79537 1.18372 1.22156 0.97870 1.03933 0.94995
1.20388 0.95510 0.89773 0.93745 1.21985 0.98595 1.01043 0.95885
1.21608 0.94757 0.95951 0.97749 1.22197 1.01752 0.95045 1.00390
1.22774 0.92536 1.00044 0.90234 1.67442 1.09986 1.15703 1.24988
1.23028 0.98685 0.95653 1.07384 1.22493 0.92283 1.01091 1.02729
0.92826 0.90929 0.94449 0.76451 0.88308 0.88132 0.89084 0.89119
0.88239 0.87998 0.84381 0.84558 0.84639 0.82507 0.91627 0.90316
0.89804 0.91667
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.09 12.91 55.43 0.72 -23.37 16
2 C 0.07 1.93 5.39 -17.82 -0.10 1.83 16
3 Si 0.89 20.37 29.55 -169.99 -5.02 15.35 16
4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16
6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
7 C -0.50 -12.70 8.63 -34.44 -0.30 -13.00 16
8 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16
9 C 0.03 0.60 1.38 -155.66 -0.21 0.39 16
10 C 0.16 3.65 5.50 -4.04 -0.02 3.63 16
11 N -0.70 -13.19 5.48 -60.29 -0.33 -13.52 16
12 C 0.51 9.06 7.83 -10.98 -0.09 8.97 16
13 O -0.56 -11.91 15.98 5.56 0.09 -11.82 16
14 C -0.13 -1.65 5.71 -27.88 -0.16 -1.81 16
15 C -0.07 -0.83 5.23 37.15 0.19 -0.64 16
16 S -0.24 -2.86 21.72 -107.50 -2.33 -5.19 16
17 C -0.04 -0.41 6.23 36.01 0.22 -0.18 16
18 C 0.14 1.47 6.04 -82.58 -0.50 0.97 16
19 C -0.15 -1.26 9.74 -39.44 -0.38 -1.65 16
20 C -0.07 -0.50 10.18 -39.28 -0.40 -0.90 16
21 C -0.17 -1.12 10.11 -39.44 -0.40 -1.52 16
22 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16
23 N -0.47 -5.15 10.27 -9.47 -0.10 -5.24 16
24 C -0.21 -4.32 9.96 -26.69 -0.27 -4.58 16
25 C -0.15 -3.35 9.42 -26.69 -0.25 -3.60 16
26 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16
27 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16
28 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16
29 H 0.40 6.86 8.37 -40.82 -0.34 6.52 16
30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16
32 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16
33 H 0.09 1.18 8.10 -51.92 -0.42 0.75 16
34 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16
35 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16
36 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16
37 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16
38 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16
39 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16
40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
41 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16
42 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16
43 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16
LS Contribution 383.99 15.07 5.79 5.79
Total: -1.00 -30.98 383.99 -10.69 -41.67
By element:
Atomic # 1 Polarization: 14.45 SS G_CDS: -6.64 Total: 7.81 kcal
Atomic # 6 Polarization: -8.61 SS G_CDS: -2.85 Total: -11.47 kcal
Atomic # 7 Polarization: -42.43 SS G_CDS: 0.29 Total: -42.14 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal
Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal
Atomic # 16 Polarization: -2.86 SS G_CDS: -2.33 Total: -5.19 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -30.98 -10.69 -41.67 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000431148424.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.832 kcal
(2) G-P(sol) polarization free energy of solvation -30.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds