Wall clock time and date at job start Tue Mar 31 2020 12:19:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86810 * 119.99466 * 2 1
4 4 H 1.48505 * 109.46884 * 270.00059 * 3 2 1
5 5 H 1.48495 * 109.47070 * 29.99992 * 3 2 1
6 6 H 1.48500 * 109.46974 * 150.00094 * 3 2 1
7 7 C 1.37871 * 120.00483 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99979 * 173.55266 * 7 2 1
9 9 C 1.50698 * 119.99918 * 353.55359 * 7 2 1
10 10 C 1.53001 * 115.55210 * 85.40487 * 9 7 2
11 11 N 1.46502 * 109.47073 * 65.13586 * 10 9 7
12 12 C 1.34777 * 119.99723 * 178.28163 * 11 10 9
13 13 O 1.21276 * 120.00158 * 0.02562 * 12 11 10
14 14 C 1.50708 * 119.99896 * 180.02562 * 12 11 10
15 15 C 1.52992 * 109.47142 * 180.02562 * 14 12 11
16 16 S 1.81397 * 109.47024 * 180.02562 * 15 14 12
17 17 C 1.81409 * 102.99999 * 180.02562 * 16 15 14
18 18 C 1.50705 * 109.47079 * 180.02562 * 17 16 15
19 19 C 1.38230 * 119.61502 * 270.01961 * 18 17 16
20 20 C 1.38620 * 119.16097 * 179.74750 * 19 18 17
21 21 C 1.38677 * 118.41819 * 0.47331 * 20 19 18
22 22 C 1.38183 * 119.16377 * 359.50226 * 21 20 19
23 23 N 1.31850 * 119.61795 * 89.99714 * 18 17 16
24 24 C 1.53003 * 117.49864 * 231.06999 * 9 7 2
25 25 C 1.53001 * 117.49814 * 299.73154 * 9 7 2
26 26 H 0.97000 * 120.00650 * 5.06744 * 1 2 3
27 27 H 1.09003 * 109.46824 * 305.14108 * 10 9 7
28 28 H 1.08998 * 109.47252 * 185.14060 * 10 9 7
29 29 H 0.96998 * 120.00435 * 358.28969 * 11 10 9
30 30 H 1.09003 * 109.47060 * 59.99922 * 14 12 11
31 31 H 1.08994 * 109.47009 * 300.00203 * 14 12 11
32 32 H 1.08993 * 109.47390 * 59.99852 * 15 14 12
33 33 H 1.09006 * 109.47447 * 299.99574 * 15 14 12
34 34 H 1.08994 * 109.47153 * 59.99607 * 17 16 15
35 35 H 1.08998 * 109.46675 * 299.99546 * 17 16 15
36 36 H 1.08003 * 120.41668 * 359.95545 * 19 18 17
37 37 H 1.08002 * 120.79348 * 180.23162 * 20 19 18
38 38 H 1.08008 * 120.41738 * 179.78296 * 21 20 19
39 39 H 1.08000 * 119.61697 * 180.25386 * 22 21 20
40 40 H 1.08996 * 117.49807 * 215.00254 * 24 9 7
41 41 H 1.09005 * 117.49983 * 0.02944 * 24 9 7
42 42 H 1.08995 * 117.50011 * 359.97438 * 25 9 7
43 43 H 1.09000 * 117.49779 * 144.97724 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4964 2.0466 -1.4001
5 1 1.4464 2.6527 0.7000
6 1 3.5466 1.4404 0.7000
7 6 2.0046 -1.1939 -0.0005
8 1 3.0795 -1.1968 -0.1056
9 6 1.2583 -2.4950 0.1454
10 6 0.7022 -3.0860 -1.1517
11 7 1.8113 -3.4581 -2.0336
12 6 1.5601 -4.0344 -3.2258
13 8 0.4159 -4.2445 -3.5686
14 6 2.7010 -4.4178 -4.1328
15 6 2.1461 -5.0473 -5.4120
16 16 3.5194 -5.5094 -6.5034
17 6 2.6753 -6.2248 -7.9409
18 6 3.6982 -6.6656 -8.9561
19 6 4.1189 -5.7802 -9.9307
20 6 5.0640 -6.1939 -10.8565
21 6 5.5455 -7.4917 -10.7732
22 6 5.0783 -8.3202 -9.7709
23 7 4.1817 -7.8911 -8.9041
24 6 1.7474 -3.4738 1.2149
25 6 0.4420 -2.7017 1.4228
26 1 -0.4851 0.8367 -0.0742
27 1 0.0755 -2.3456 -1.6488
28 1 0.1077 -3.9703 -0.9225
29 1 2.7264 -3.2899 -1.7595
30 1 3.3445 -5.1354 -3.6237
31 1 3.2780 -3.5285 -4.3865
32 1 1.5029 -4.3294 -5.9209
33 1 1.5689 -5.9365 -5.1587
34 1 2.0194 -5.4769 -8.3865
35 1 2.0842 -7.0842 -7.6245
36 1 3.7188 -4.7777 -9.9682
37 1 5.4142 -5.5227 -11.6268
38 1 6.2799 -7.8489 -11.4801
39 1 5.4514 -9.3310 -9.6967
40 1 1.6729 -4.5386 0.9944
41 1 2.6086 -3.1765 1.8133
42 1 0.4450 -1.8969 2.1578
43 1 -0.4914 -3.2584 1.3391
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000431148424.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:01
Heat of formation + Delta-G solvation = -8.349504 kcal
Electronic energy + Delta-G solvation = -22671.261850 eV
Core-core repulsion = 19228.162455 eV
Total energy + Delta-G solvation = -3443.099395 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.08217 -40.68339 -38.50383 -34.94597 -34.04773 -33.99337 -33.83162 -33.26109
-28.91937 -28.38610 -27.32037 -24.99123 -24.45148 -23.08031 -22.92961 -21.36694
-20.91822 -18.46293 -18.04010 -17.75566 -17.34749 -16.96532 -16.89087 -16.62623
-16.51729 -16.37639 -15.73687 -15.42758 -15.08266 -14.70098 -14.44045 -14.34671
-14.24462 -13.76837 -13.59640 -13.49233 -13.43320 -13.22340 -12.91943 -12.83735
-12.55729 -12.37957 -12.33831 -12.04480 -11.50185 -11.16434 -10.93673 -10.84599
-10.81757 -10.45972 -10.42542 -10.06225 -9.90367 -9.82701 -8.71122 -8.09768
-6.22901 -0.17216 0.33335 0.80302 1.42391 1.45443 1.50505 1.53593
1.71512 2.40825 2.47308 2.91601 3.18446 3.18551 3.50086 3.65819
3.71537 3.93601 4.00034 4.04423 4.13145 4.21508 4.25935 4.35672
4.41609 4.53607 4.55835 4.65134 4.69929 4.72168 4.74995 4.83369
4.87573 4.99713 5.04938 5.19323 5.26566 5.27187 5.57904 5.60459
5.68094 5.76322 5.78416 6.36725 6.75601 6.85085 7.01184 7.37007
7.46762 8.97719
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.021753 B = 0.002033 C = 0.001937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1286.872276 B =13768.239215 C =14449.511830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.908 5.908
2 C 0.023 3.977
3 Si 0.950 3.050
4 H -0.279 1.279
5 H -0.291 1.291
6 H -0.264 1.264
7 C -0.503 4.503
8 H 0.065 0.935
9 C 0.003 3.997
10 C 0.179 3.821
11 N -0.698 5.698
12 C 0.508 3.492
13 O -0.597 6.597
14 C -0.112 4.112
15 C -0.062 4.062
16 S -0.251 6.251
17 C -0.035 4.035
18 C 0.118 3.882
19 C -0.161 4.161
20 C -0.077 4.077
21 C -0.165 4.165
22 C 0.085 3.915
23 N -0.507 5.507
24 C -0.176 4.176
25 C -0.161 4.161
26 H 0.258 0.742
27 H 0.029 0.971
28 H 0.035 0.965
29 H 0.412 0.588
30 H 0.121 0.879
31 H 0.117 0.883
32 H 0.083 0.917
33 H 0.082 0.918
34 H 0.114 0.886
35 H 0.095 0.905
36 H 0.151 0.849
37 H 0.166 0.834
38 H 0.167 0.833
39 H 0.177 0.823
40 H 0.089 0.911
41 H 0.086 0.914
42 H 0.063 0.937
43 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.066 -13.149 -20.633 27.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.178 4.178
3 Si 0.776 3.224
4 H -0.205 1.205
5 H -0.217 1.217
6 H -0.188 1.188
7 C -0.541 4.541
8 H 0.083 0.917
9 C 0.002 3.998
10 C 0.055 3.945
11 N -0.347 5.347
12 C 0.294 3.706
13 O -0.479 6.479
14 C -0.153 4.153
15 C -0.210 4.210
16 S -0.023 6.023
17 C -0.183 4.183
18 C -0.020 4.020
19 C -0.182 4.182
20 C -0.103 4.103
21 C -0.186 4.186
22 C -0.073 4.073
23 N -0.217 5.217
24 C -0.213 4.213
25 C -0.199 4.199
26 H 0.067 0.933
27 H 0.048 0.952
28 H 0.054 0.946
29 H 0.248 0.752
30 H 0.139 0.861
31 H 0.135 0.865
32 H 0.102 0.898
33 H 0.101 0.899
34 H 0.132 0.868
35 H 0.113 0.887
36 H 0.168 0.832
37 H 0.183 0.817
38 H 0.185 0.815
39 H 0.194 0.806
40 H 0.107 0.893
41 H 0.105 0.895
42 H 0.082 0.918
43 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 11.871 -13.594 -19.929 26.887
hybrid contribution -0.900 1.599 -0.375 1.872
sum 10.971 -11.996 -20.304 26.010
Atomic orbital electron populations
1.70102 1.07295 1.27324 1.49880 1.25723 0.95465 1.02140 0.94443
0.85680 0.78920 0.79762 0.78031 1.20456 1.21695 1.18796 1.20655
0.93165 0.89477 1.50760 0.91681 1.19098 0.99719 0.94581 0.86393
1.20550 0.87859 0.95489 0.90628 1.45867 1.11197 1.59931 1.17731
1.21060 0.90636 0.76877 0.82019 1.90645 1.24909 1.57224 1.75164
1.21295 0.96319 1.04209 0.93481 1.22987 0.97531 1.03907 0.96625
1.86905 1.16376 1.79680 1.19344 1.22194 0.97976 1.03917 0.94220
1.20456 0.96483 0.90314 0.94710 1.22210 0.98915 1.01342 0.95745
1.22028 0.93910 0.96585 0.97779 1.22572 1.01408 0.94652 0.99924
1.23231 0.92259 1.01349 0.90414 1.67383 1.11338 1.16399 1.26577
1.23011 0.97326 0.96271 1.04654 1.22435 0.93795 1.01438 1.02220
0.93250 0.95233 0.94634 0.75220 0.86069 0.86517 0.89820 0.89898
0.86768 0.88679 0.83158 0.81683 0.81507 0.80639 0.89265 0.89520
0.91839 0.91176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.21 12.91 21.44 0.28 -50.93 16
2 C 0.02 1.21 5.39 84.65 0.46 1.66 16
3 Si 0.95 41.87 29.55 68.60 2.03 43.89 16
4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16
7 C -0.50 -25.31 8.63 25.60 0.22 -25.09 16
8 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16
9 C 0.00 0.13 1.38 -52.93 -0.07 0.06 16
10 C 0.18 8.12 5.50 86.38 0.48 8.59 16
11 N -0.70 -25.89 5.48 -463.05 -2.54 -28.43 16
12 C 0.51 17.87 7.83 87.66 0.69 18.55 16
13 O -0.60 -25.81 15.98 -3.02 -0.05 -25.86 16
14 C -0.11 -2.79 5.71 29.85 0.17 -2.62 16
15 C -0.06 -1.51 5.23 71.98 0.38 -1.14 16
16 S -0.25 -5.68 21.72 -56.49 -1.23 -6.91 16
17 C -0.03 -0.68 6.23 71.24 0.44 -0.23 16
18 C 0.12 2.31 6.04 42.56 0.26 2.57 16
19 C -0.16 -2.38 9.74 22.36 0.22 -2.17 16
20 C -0.08 -0.83 10.18 22.47 0.23 -0.60 16
21 C -0.17 -1.69 10.11 22.36 0.23 -1.47 16
22 C 0.08 1.26 11.18 84.67 0.95 2.20 16
23 N -0.51 -10.77 10.27 -183.88 -1.89 -12.65 16
24 C -0.18 -6.88 9.96 30.62 0.30 -6.57 16
25 C -0.16 -7.28 9.42 30.62 0.29 -6.99 16
26 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16
27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16
28 H 0.04 1.60 8.09 -2.39 -0.02 1.58 16
29 H 0.41 13.46 8.37 -92.71 -0.78 12.69 16
30 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16
31 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16
32 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16
33 H 0.08 2.14 8.10 -2.39 -0.02 2.12 16
34 H 0.11 1.79 8.08 -2.39 -0.02 1.77 16
35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
36 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16
37 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16
38 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16
39 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16
40 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16
41 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16
42 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16
43 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16
Total: -1.00 -67.92 383.99 2.05 -65.87
By element:
Atomic # 1 Polarization: 28.05 SS G_CDS: 0.22 Total: 28.27 kcal
Atomic # 6 Polarization: -18.47 SS G_CDS: 5.23 Total: -13.25 kcal
Atomic # 7 Polarization: -87.87 SS G_CDS: -4.15 Total: -92.02 kcal
Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal
Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal
Atomic # 16 Polarization: -5.68 SS G_CDS: -1.23 Total: -6.91 kcal
Total: -67.92 2.05 -65.87 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000431148424.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.519 kcal
(2) G-P(sol) polarization free energy of solvation -67.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds