Wall clock time and date at job start Tue Mar 31 2020 12:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99716 * 2 1 4 4 N 1.46497 * 109.47398 * 124.99490 * 3 2 1 5 5 C 1.46497 * 120.00028 * 270.00287 * 4 3 2 6 6 C 1.50703 * 109.46829 * 269.99589 * 5 4 3 7 7 H 1.08002 * 120.00266 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00187 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99833 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47212 * 89.99680 * 10 8 6 12 12 H 1.48504 * 109.46576 * 209.99953 * 10 8 6 13 13 H 1.48501 * 109.46946 * 329.99748 * 10 8 6 14 14 C 1.34775 * 119.99707 * 89.99448 * 4 3 2 15 15 O 1.21602 * 119.99804 * 180.02562 * 14 4 3 16 16 N 1.34779 * 120.00241 * 0.02562 * 14 4 3 17 17 C 1.40185 * 119.99656 * 175.17717 * 16 14 4 18 18 C 1.38637 * 120.09781 * 93.18013 * 17 16 14 19 19 C 1.50697 * 119.99388 * 359.97438 * 18 17 16 20 20 C 1.38270 * 120.00739 * 179.71942 * 18 17 16 21 21 C 1.38285 * 120.20550 * 0.54775 * 20 18 17 22 22 C 1.38204 * 120.19774 * 359.72494 * 21 20 18 23 23 C 1.38769 * 119.99199 * 359.97438 * 22 21 20 24 24 S 1.76203 * 120.10828 * 180.02562 * 23 22 21 25 25 C 1.81401 * 102.99502 * 359.97438 * 24 23 22 26 26 H 1.08003 * 120.00613 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.00094 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00399 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47077 * 4.99065 * 3 2 1 30 30 H 1.09004 * 109.46642 * 244.99696 * 3 2 1 31 31 H 1.09001 * 109.47674 * 29.99204 * 5 4 3 32 32 H 1.09000 * 109.47523 * 149.99939 * 5 4 3 33 33 H 0.97001 * 120.00033 * 180.02562 * 9 8 6 34 34 H 0.96993 * 119.99748 * 354.89918 * 16 14 4 35 35 H 1.08996 * 109.47079 * 90.00651 * 19 18 17 36 36 H 1.09003 * 109.47219 * 210.00630 * 19 18 17 37 37 H 1.08997 * 109.46925 * 330.00334 * 19 18 17 38 38 H 1.07998 * 119.89110 * 180.24972 * 20 18 17 39 39 H 1.08004 * 119.89976 * 179.69914 * 21 20 18 40 40 H 1.08009 * 120.00467 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47170 * 299.99787 * 25 24 23 42 42 H 1.08993 * 109.47206 * 59.99998 * 25 24 23 43 43 H 1.09007 * 109.46790 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5586 1.8652 2.4248 6 6 2.8439 3.3439 2.4803 7 1 3.3030 3.8374 1.6364 8 6 2.5189 4.0669 3.6084 9 7 1.9594 3.4661 4.6359 10 14 2.8720 5.9000 3.6769 11 1 1.6986 6.6497 3.1608 12 1 3.1367 6.3008 5.0821 13 1 4.0614 6.2065 2.8422 14 6 4.2495 0.8664 0.9825 15 8 5.0215 0.8883 1.9218 16 7 4.6499 0.3763 -0.2075 17 6 5.9835 -0.0142 -0.3918 18 6 6.3572 -1.3327 -0.1820 19 6 5.3291 -2.3482 0.2453 20 6 7.6721 -1.7170 -0.3700 21 6 8.6202 -0.7874 -0.7562 22 6 8.2582 0.5303 -0.9622 23 6 6.9397 0.9238 -0.7820 24 16 6.4746 2.6029 -1.0445 25 6 8.0379 3.3893 -1.5225 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5401 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3584 2.1317 0.0894 30 1 2.6212 1.4026 -0.9314 31 1 1.4884 1.6969 2.5459 32 1 3.0986 1.3607 3.2260 33 1 1.7305 3.9749 5.4294 34 1 4.0142 0.2901 -0.9351 35 1 4.8824 -2.8063 -0.6370 36 1 5.8082 -3.1175 0.8510 37 1 4.5533 -1.8554 0.8312 38 1 7.9603 -2.7454 -0.2099 39 1 9.6468 -1.0921 -0.8969 40 1 9.0012 1.2537 -1.2642 41 1 8.7627 3.2764 -0.7163 42 1 8.4220 2.9149 -2.4255 43 1 7.8681 4.4490 -1.7133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455139788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:43 Heat of formation + Delta-G solvation = 28.947185 kcal Electronic energy + Delta-G solvation = -25061.099956 eV Core-core repulsion = 21619.617867 eV Total energy + Delta-G solvation = -3441.482089 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17242 -38.55003 -35.64165 -34.36127 -33.04681 -32.67636 -31.97620 -29.76553 -29.06382 -27.38258 -26.57049 -25.36523 -23.33128 -22.27277 -21.24032 -19.98316 -19.32525 -17.80291 -17.14085 -16.66891 -16.39592 -15.78413 -15.32508 -14.76714 -14.54987 -14.18483 -14.01500 -13.88108 -13.81616 -13.55882 -13.47072 -12.95198 -12.75461 -12.58034 -12.34263 -12.15124 -12.08561 -11.70106 -11.50005 -11.28386 -11.20201 -11.02345 -10.82363 -10.52255 -10.09835 -10.07931 -9.59802 -9.55001 -9.22807 -9.17068 -8.88028 -8.56169 -8.34566 -7.57860 -7.21681 -5.95284 -3.98582 1.25590 1.32862 1.62872 2.46033 2.55482 3.35553 3.36963 3.42245 3.48950 3.71414 4.01686 4.48279 4.63985 4.82682 4.91716 5.00614 5.04085 5.22115 5.25949 5.35036 5.38510 5.41472 5.42395 5.60478 5.61629 5.65840 5.75954 5.82071 6.02358 6.17479 6.20903 6.22136 6.41284 6.58553 6.72951 6.78147 6.83900 6.98189 7.26908 7.45449 7.63507 7.78682 8.04221 8.34152 8.73866 9.03443 9.44032 9.66935 11.12774 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.005021 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.547819 B = 5574.754682 C = 6938.628499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.138 3.862 4 N -0.605 5.605 5 C 0.264 3.736 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.708 3.292 15 O -0.569 6.569 16 N -0.711 5.711 17 C 0.184 3.816 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.098 4.098 22 C -0.140 4.140 23 C -0.077 4.077 24 S -0.079 6.079 25 C -0.156 4.156 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.703 -9.148 -16.184 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.013 3.987 4 N -0.339 5.339 5 C 0.144 3.856 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.410 3.590 15 O -0.444 6.444 16 N -0.369 5.369 17 C 0.085 3.915 18 C -0.063 4.063 19 C -0.167 4.167 20 C -0.147 4.147 21 C -0.118 4.118 22 C -0.165 4.165 23 C -0.192 4.192 24 S 0.165 5.835 25 C -0.324 4.324 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.237 0.763 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.099 -8.329 -15.163 18.700 hybrid contribution 1.150 0.425 -0.292 1.260 sum 8.248 -7.904 -15.455 19.219 Atomic orbital electron populations 1.23805 0.95821 1.01726 1.00524 1.23474 0.96490 0.99035 0.99954 1.20504 0.93196 0.95403 0.89581 1.47490 1.09030 1.63445 1.13955 1.19180 0.95003 0.93560 0.77826 1.21486 1.39865 0.93410 1.01142 0.92352 1.24906 0.95248 0.98556 0.95368 1.69938 1.42499 1.36001 1.05201 0.86542 0.78580 0.85337 0.77246 1.20751 1.21207 1.19875 1.15847 0.82941 0.78210 0.82003 1.90922 1.53005 1.61625 1.38865 1.42763 1.08387 1.70956 1.14802 1.16528 0.83829 0.90586 1.00541 1.20070 0.95122 0.93755 0.97357 1.20712 0.97843 0.97024 1.01146 1.20901 0.92170 0.99648 1.01946 1.20968 0.99211 0.92688 0.98961 1.20978 0.93993 0.97142 1.04380 1.22211 0.96411 0.97411 1.03143 1.86081 1.13200 1.00308 1.83905 1.23726 0.99725 1.04530 1.04458 0.88267 0.88845 0.87885 0.89236 0.91455 0.94985 0.93932 0.92874 0.76341 0.91263 0.91455 0.90976 0.85739 0.85843 0.85920 0.89860 0.90139 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 14.32 29.02 0.42 -1.92 16 2 C -0.17 -2.42 9.85 -36.02 -0.35 -2.77 16 3 C 0.14 2.28 5.57 -5.19 -0.03 2.26 16 4 N -0.60 -13.14 2.44 -182.18 -0.44 -13.58 16 5 C 0.26 7.04 5.16 -5.19 -0.03 7.02 16 6 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 7 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 10 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.71 15.52 7.73 -86.92 -0.67 14.85 16 15 O -0.57 -15.35 15.90 5.28 0.08 -15.27 16 16 N -0.71 -12.12 3.47 -14.06 -0.05 -12.17 16 17 C 0.18 3.03 5.27 -83.41 -0.44 2.59 16 18 C -0.06 -0.86 5.89 -104.46 -0.62 -1.47 16 19 C -0.11 -1.39 9.76 36.00 0.35 -1.04 16 20 C -0.13 -1.52 9.70 -39.55 -0.38 -1.91 16 21 C -0.10 -1.14 10.04 -39.58 -0.40 -1.54 16 22 C -0.14 -1.84 9.36 -39.40 -0.37 -2.20 16 23 C -0.08 -1.22 6.12 -38.91 -0.24 -1.46 16 24 S -0.08 -1.25 21.93 -107.50 -2.36 -3.61 16 25 C -0.16 -1.69 9.15 101.05 0.92 -0.77 16 26 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 27 H 0.09 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.10 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.09 1.55 7.72 -51.93 -0.40 1.15 16 30 H 0.07 0.96 6.44 -51.93 -0.33 0.62 16 31 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.40 5.69 6.63 -40.82 -0.27 5.42 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.07 1.09 7.07 -51.93 -0.37 0.72 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 1.32 5.88 -52.48 -0.31 1.01 16 41 H 0.08 0.88 7.75 -51.92 -0.40 0.48 16 42 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 43 H 0.11 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -35.23 375.94 -9.84 -45.08 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.20 Total: 4.97 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.25 Total: -2.06 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.24 Total: -52.14 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.36 Total: -3.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.23 -9.84 -45.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455139788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.022 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds