Wall clock time and date at job start Tue Mar 31 2020 12:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99716 * 2 1 4 4 N 1.46497 * 109.47398 * 124.99490 * 3 2 1 5 5 C 1.46497 * 120.00028 * 270.00287 * 4 3 2 6 6 C 1.50703 * 109.46829 * 269.99589 * 5 4 3 7 7 H 1.08002 * 120.00266 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00187 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99833 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47212 * 89.99680 * 10 8 6 12 12 H 1.48504 * 109.46576 * 209.99953 * 10 8 6 13 13 H 1.48501 * 109.46946 * 329.99748 * 10 8 6 14 14 C 1.34775 * 119.99707 * 89.99448 * 4 3 2 15 15 O 1.21602 * 119.99804 * 180.02562 * 14 4 3 16 16 N 1.34779 * 120.00241 * 0.02562 * 14 4 3 17 17 C 1.40185 * 119.99656 * 175.17717 * 16 14 4 18 18 C 1.38637 * 120.09781 * 93.18013 * 17 16 14 19 19 C 1.50697 * 119.99388 * 359.97438 * 18 17 16 20 20 C 1.38270 * 120.00739 * 179.71942 * 18 17 16 21 21 C 1.38285 * 120.20550 * 0.54775 * 20 18 17 22 22 C 1.38204 * 120.19774 * 359.72494 * 21 20 18 23 23 C 1.38769 * 119.99199 * 359.97438 * 22 21 20 24 24 S 1.76203 * 120.10828 * 180.02562 * 23 22 21 25 25 C 1.81401 * 102.99502 * 359.97438 * 24 23 22 26 26 H 1.08003 * 120.00613 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.00094 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00399 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47077 * 4.99065 * 3 2 1 30 30 H 1.09004 * 109.46642 * 244.99696 * 3 2 1 31 31 H 1.09001 * 109.47674 * 29.99204 * 5 4 3 32 32 H 1.09000 * 109.47523 * 149.99939 * 5 4 3 33 33 H 0.97001 * 120.00033 * 180.02562 * 9 8 6 34 34 H 0.96993 * 119.99748 * 354.89918 * 16 14 4 35 35 H 1.08996 * 109.47079 * 90.00651 * 19 18 17 36 36 H 1.09003 * 109.47219 * 210.00630 * 19 18 17 37 37 H 1.08997 * 109.46925 * 330.00334 * 19 18 17 38 38 H 1.07998 * 119.89110 * 180.24972 * 20 18 17 39 39 H 1.08004 * 119.89976 * 179.69914 * 21 20 18 40 40 H 1.08009 * 120.00467 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47170 * 299.99787 * 25 24 23 42 42 H 1.08993 * 109.47206 * 59.99998 * 25 24 23 43 43 H 1.09007 * 109.46790 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5586 1.8652 2.4248 6 6 2.8439 3.3439 2.4803 7 1 3.3030 3.8374 1.6364 8 6 2.5189 4.0669 3.6084 9 7 1.9594 3.4661 4.6359 10 14 2.8720 5.9000 3.6769 11 1 1.6986 6.6497 3.1608 12 1 3.1367 6.3008 5.0821 13 1 4.0614 6.2065 2.8422 14 6 4.2495 0.8664 0.9825 15 8 5.0215 0.8883 1.9218 16 7 4.6499 0.3763 -0.2075 17 6 5.9835 -0.0142 -0.3918 18 6 6.3572 -1.3327 -0.1820 19 6 5.3291 -2.3482 0.2453 20 6 7.6721 -1.7170 -0.3700 21 6 8.6202 -0.7874 -0.7562 22 6 8.2582 0.5303 -0.9622 23 6 6.9397 0.9238 -0.7820 24 16 6.4746 2.6029 -1.0445 25 6 8.0379 3.3893 -1.5225 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5401 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3584 2.1317 0.0894 30 1 2.6212 1.4026 -0.9314 31 1 1.4884 1.6969 2.5459 32 1 3.0986 1.3607 3.2260 33 1 1.7305 3.9749 5.4294 34 1 4.0142 0.2901 -0.9351 35 1 4.8824 -2.8063 -0.6370 36 1 5.8082 -3.1175 0.8510 37 1 4.5533 -1.8554 0.8312 38 1 7.9603 -2.7454 -0.2099 39 1 9.6468 -1.0921 -0.8969 40 1 9.0012 1.2537 -1.2642 41 1 8.7627 3.2764 -0.7163 42 1 8.4220 2.9149 -2.4255 43 1 7.8681 4.4490 -1.7133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455139788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:43 Heat of formation + Delta-G solvation = 8.489870 kcal Electronic energy + Delta-G solvation = -25061.987052 eV Core-core repulsion = 21619.617867 eV Total energy + Delta-G solvation = -3442.369185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58825 -39.86720 -37.22005 -35.84219 -34.93037 -33.76539 -33.61256 -30.97043 -30.07100 -29.18566 -27.63253 -26.89684 -25.13599 -23.56005 -22.41793 -21.31184 -20.76848 -19.23256 -18.57049 -18.47089 -17.90066 -17.06768 -16.80862 -16.21200 -16.01924 -15.69365 -15.56897 -14.92182 -14.80806 -14.64424 -14.59273 -14.38707 -14.29099 -14.12218 -13.53926 -13.30687 -13.23522 -13.08771 -13.07437 -12.88171 -12.57887 -12.49338 -12.33070 -12.21484 -12.19969 -11.67203 -11.19930 -11.06554 -10.61339 -10.59258 -10.37829 -10.32641 -9.63038 -9.38993 -8.38687 -8.18800 -6.32326 0.19586 0.29332 0.56815 1.29133 1.35715 1.38932 1.49721 1.53693 1.94022 2.32310 2.42405 2.67697 3.09312 3.14578 3.82469 4.02166 4.03090 4.19543 4.20919 4.22940 4.30129 4.33416 4.41515 4.43282 4.66203 4.74734 4.77820 4.78788 4.86354 4.96636 5.04704 5.18069 5.21478 5.22777 5.42925 5.53551 5.54950 5.67466 5.68902 5.75887 5.91625 6.06962 6.08560 6.11763 6.76396 7.13133 7.34423 7.78094 8.88034 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.005021 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.547819 B = 5574.754682 C = 6938.628499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.136 3.864 4 N -0.611 5.611 5 C 0.285 3.715 6 C -0.536 4.536 7 H 0.048 0.952 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.711 3.289 15 O -0.628 6.628 16 N -0.687 5.687 17 C 0.143 3.857 18 C -0.074 4.074 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.090 4.090 22 C -0.145 4.145 23 C -0.090 4.090 24 S -0.165 6.165 25 C -0.134 4.134 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.024 0.976 32 H -0.005 1.005 33 H 0.266 0.734 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.146 0.854 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -9.710 -18.120 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.205 4.205 3 C 0.014 3.986 4 N -0.344 5.344 5 C 0.163 3.837 6 C -0.575 4.575 7 H 0.067 0.933 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.202 1.202 14 C 0.414 3.586 15 O -0.508 6.508 16 N -0.343 5.343 17 C 0.045 3.955 18 C -0.077 4.077 19 C -0.163 4.163 20 C -0.144 4.144 21 C -0.109 4.109 22 C -0.169 4.169 23 C -0.205 4.205 24 S 0.078 5.922 25 C -0.302 4.302 26 H 0.118 0.882 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.013 0.987 33 H 0.075 0.925 34 H 0.250 0.750 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.498 -8.922 -17.182 21.143 hybrid contribution 0.766 0.525 0.257 0.964 sum 9.264 -8.397 -16.925 21.043 Atomic orbital electron populations 1.24045 0.95340 1.02973 0.97779 1.23304 0.96925 0.97946 1.02354 1.20700 0.92642 0.96751 0.88518 1.47314 1.10126 1.63300 1.13698 1.18567 0.93559 0.92391 0.79173 1.21686 1.40071 0.94499 1.01198 0.93328 1.25786 0.94788 1.03475 0.94823 1.70051 1.43092 1.37926 1.05754 0.85482 0.78795 0.79542 0.77397 1.18657 1.20516 1.20156 1.15924 0.82240 0.77817 0.82646 1.90856 1.54644 1.64083 1.41247 1.42327 1.09368 1.69468 1.13160 1.16935 0.83446 0.92019 1.03116 1.20372 0.96718 0.93213 0.97424 1.20708 0.96848 0.96795 1.01939 1.21329 0.91071 1.01474 1.00554 1.21464 1.00965 0.91727 0.96780 1.21363 0.93207 0.98572 1.03761 1.22288 0.97541 0.96358 1.04272 1.86229 1.18492 1.02657 1.84823 1.23759 0.96272 1.04672 1.05470 0.88236 0.86327 0.86998 0.90139 0.89256 0.95773 0.98697 0.92480 0.75011 0.88744 0.89883 0.94310 0.82472 0.81903 0.83618 0.89452 0.87576 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 14.32 67.78 0.97 -3.07 16 2 C -0.19 -5.26 9.85 25.65 0.25 -5.00 16 3 C 0.14 4.67 5.57 85.64 0.48 5.14 16 4 N -0.61 -28.00 2.44 -848.54 -2.07 -30.07 16 5 C 0.28 16.15 5.16 85.63 0.44 16.60 16 6 C -0.54 -32.31 9.39 25.60 0.24 -32.07 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.59 5.46 84.65 0.46 1.06 16 9 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 10 Si 0.96 46.67 29.54 68.60 2.03 48.70 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 14 C 0.71 32.97 7.73 179.05 1.38 34.36 16 15 O -0.63 -36.13 15.90 -4.04 -0.06 -36.20 16 16 N -0.69 -24.31 3.47 -316.65 -1.10 -25.40 16 17 C 0.14 4.76 5.27 38.21 0.20 4.97 16 18 C -0.07 -2.07 5.89 -19.76 -0.12 -2.18 16 19 C -0.11 -2.59 9.76 71.24 0.70 -1.89 16 20 C -0.12 -2.65 9.70 22.29 0.22 -2.43 16 21 C -0.09 -1.78 10.04 22.27 0.22 -1.55 16 22 C -0.14 -3.49 9.36 22.39 0.21 -3.28 16 23 C -0.09 -2.84 6.12 22.70 0.14 -2.70 16 24 S -0.17 -5.35 21.93 -56.49 -1.24 -6.59 16 25 C -0.13 -2.70 9.15 113.37 1.04 -1.66 16 26 H 0.10 2.46 7.84 -2.91 -0.02 2.43 16 27 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 28 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.08 2.87 7.72 -2.38 -0.02 2.86 16 30 H 0.09 2.60 6.44 -2.39 -0.02 2.58 16 31 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 32 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.41 12.07 6.63 -92.71 -0.61 11.46 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 37 H 0.04 1.20 7.07 -2.39 -0.02 1.18 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.15 2.70 5.88 -2.91 -0.02 2.69 16 41 H 0.09 1.70 7.75 -2.39 -0.02 1.68 16 42 H 0.11 1.59 7.75 -2.39 -0.02 1.57 16 43 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -81.97 375.94 5.07 -76.90 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.40 Total: 23.79 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.83 Total: 6.26 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -2.88 Total: -112.87 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.06 Total: -36.20 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.24 Total: -6.59 kcal Total: -81.97 5.07 -76.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455139788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.394 kcal (2) G-P(sol) polarization free energy of solvation -81.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds