Wall clock time and date at job start Tue Mar 31 2020 12:58:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.52992 * 110.35818 * 2 1
4 4 N 1.46500 * 109.47175 * 300.69929 * 3 2 1
5 5 C 1.34780 * 119.99710 * 180.02562 * 4 3 2
6 6 O 1.21581 * 120.00351 * 0.02562 * 5 4 3
7 7 N 1.34775 * 119.99740 * 179.97438 * 5 4 3
8 8 C 1.39955 * 120.00270 * 174.80197 * 7 5 4
9 9 C 1.39286 * 119.94793 * 326.31726 * 8 7 5
10 10 C 1.38481 * 120.43031 * 180.02562 * 9 8 7
11 11 C 1.37684 * 120.32147 * 359.67580 * 10 9 8
12 12 C 1.40731 * 119.88130 * 0.57912 * 11 10 9
13 13 C 1.41416 * 120.20851 * 179.71903 * 12 11 10
14 14 H 1.07998 * 119.99710 * 331.79011 * 13 12 11
15 15 C 1.39931 * 119.99985 * 151.51954 * 13 12 11
16 16 N 1.30830 * 120.00170 * 349.21913 * 15 13 12
17 17 Si 1.86793 * 120.00198 * 169.21990 * 15 13 12
18 18 H 1.48503 * 109.47466 * 89.99647 * 17 15 13
19 19 H 1.48500 * 109.47415 * 210.00194 * 17 15 13
20 20 H 1.48504 * 109.46945 * 329.99580 * 17 15 13
21 21 C 1.38236 * 119.94816 * 146.28542 * 8 7 5
22 22 C 1.54276 * 110.39579 * 122.32351 * 2 1 3
23 23 C 1.53861 * 108.92556 * 90.95501 * 22 2 1
24 24 C 1.55141 * 106.89837 * 47.25269 * 23 22 2
25 25 S 1.83097 * 110.39940 * 237.67405 * 2 1 3
26 26 H 1.09001 * 109.46719 * 59.30037 * 1 2 3
27 27 H 1.08996 * 109.47396 * 179.29717 * 1 2 3
28 28 H 1.09001 * 109.46817 * 299.30370 * 1 2 3
29 29 H 1.09005 * 109.46822 * 180.70207 * 3 2 1
30 30 H 1.09004 * 109.47119 * 60.70430 * 3 2 1
31 31 H 0.96998 * 119.99957 * 359.97438 * 4 3 2
32 32 H 0.97001 * 120.00430 * 354.81065 * 7 5 4
33 33 H 1.08000 * 119.78507 * 359.97438 * 9 8 7
34 34 H 1.08006 * 119.84220 * 179.97438 * 10 9 8
35 35 H 1.08005 * 120.05863 * 180.32034 * 11 10 9
36 36 H 0.96996 * 120.00773 * 179.97438 * 16 15 13
37 37 H 1.08005 * 120.16041 * 359.97438 * 21 8 7
38 38 H 1.08995 * 109.60582 * 210.87049 * 22 2 1
39 39 H 1.08999 * 109.61339 * 331.03732 * 22 2 1
40 40 H 1.08997 * 109.97604 * 166.61027 * 23 22 2
41 41 H 1.08997 * 109.97765 * 287.89282 * 23 22 2
42 42 H 1.08998 * 110.86016 * 76.06149 * 24 23 22
43 43 H 1.09001 * 110.85596 * 199.49779 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0623 1.4344 0.0000
4 7 1.5711 2.1375 -1.1876
5 6 1.9147 3.4234 -1.3996
6 8 2.6326 3.9997 -0.6055
7 7 1.4632 4.0702 -2.4925
8 6 1.7289 5.4342 -2.6581
9 6 1.7926 6.2703 -1.5459
10 6 2.0544 7.6216 -1.6982
11 6 2.2613 8.1525 -2.9516
12 6 2.1947 7.3210 -4.0850
13 6 2.4002 7.8601 -5.3761
14 1 2.1605 8.8944 -5.5738
15 6 2.9194 7.0550 -6.3960
16 7 3.4104 5.8758 -6.1128
17 14 2.9117 7.6637 -8.1620
18 1 4.1730 8.3971 -8.4384
19 1 2.8003 6.5052 -9.0844
20 1 1.7554 8.5726 -8.3672
21 6 1.9285 5.9496 -3.9252
22 6 2.0677 -0.7732 1.2220
23 6 2.2644 -2.2485 0.8320
24 6 3.0166 -2.2599 -0.5248
25 16 2.1683 -0.9177 -1.4502
26 1 -0.3633 0.5247 -0.8837
27 1 -0.3634 -1.0275 -0.0126
28 1 -0.3633 0.5030 0.8962
29 1 3.1522 1.4174 -0.0126
30 1 1.7173 1.9499 0.8963
31 1 0.9992 1.6774 -1.8218
32 1 0.9539 3.5903 -3.1643
33 1 1.6360 5.8622 -0.5583
34 1 2.1012 8.2613 -0.8292
35 1 2.4702 9.2060 -3.0651
36 1 3.7700 5.3175 -6.8197
37 1 1.8803 5.3019 -4.7882
38 1 3.0213 -0.3471 1.5338
39 1 1.3532 -0.7038 2.0422
40 1 2.8578 -2.7584 1.5909
41 1 1.2962 -2.7377 0.7251
42 1 4.0726 -2.0289 -0.3851
43 1 2.8943 -3.2189 -1.0283
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000455924159.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:48
Heat of formation + Delta-G solvation = -35.727355 kcal
Electronic energy + Delta-G solvation = -24020.490998 eV
Core-core repulsion = 20576.204411 eV
Total energy + Delta-G solvation = -3444.286587 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.46925 -39.35805 -38.35178 -36.02279 -35.58423 -35.02759 -32.61145 -31.41005
-30.10356 -27.92082 -27.20507 -27.03372 -23.78284 -23.06862 -22.57112 -21.73641
-21.12214 -19.61388 -19.15204 -17.94131 -17.37195 -16.82814 -16.72308 -16.49341
-16.26564 -16.02934 -15.49611 -15.12095 -15.05603 -14.67025 -14.51830 -14.20802
-14.15884 -13.97206 -13.60860 -13.44897 -12.96535 -12.76029 -12.73691 -12.63453
-12.36603 -12.22720 -12.17587 -12.02991 -11.83982 -11.71851 -11.63412 -11.27606
-11.11567 -10.81410 -10.73241 -10.13604 -9.26378 -8.72992 -8.72821 -8.51597
-6.35752 0.75404 0.90921 1.07383 1.40695 1.41421 1.51087 1.55777
1.69116 2.16799 2.24271 2.81251 3.23250 3.43685 3.57944 3.74364
3.77771 3.95772 4.03861 4.31670 4.45040 4.50823 4.57694 4.66038
4.74432 4.76515 4.78729 4.84568 4.87302 4.97426 4.99868 5.12442
5.13293 5.17772 5.21603 5.27847 5.35982 5.39748 5.74718 5.83443
6.00418 6.12040 6.16307 6.40431 6.70382 6.96110 6.98496 7.05928
7.54968 8.40206
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.018903 B = 0.002807 C = 0.002532
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1480.882975 B = 9973.050064 C =11056.855926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.011 4.011
3 C 0.161 3.839
4 N -0.724 5.724
5 C 0.701 3.299
6 O -0.615 6.615
7 N -0.674 5.674
8 C 0.167 3.833
9 C -0.233 4.233
10 C -0.087 4.087
11 C -0.244 4.244
12 C 0.091 3.909
13 C -0.497 4.497
14 H 0.078 0.922
15 C 0.032 3.968
16 N -0.834 5.834
17 Si 0.986 3.014
18 H -0.266 1.266
19 H -0.268 1.268
20 H -0.257 1.257
21 C -0.199 4.199
22 C -0.121 4.121
23 C -0.117 4.117
24 C -0.064 4.064
25 S -0.347 6.347
26 H 0.053 0.947
27 H 0.080 0.920
28 H 0.080 0.920
29 H 0.055 0.945
30 H 0.078 0.922
31 H 0.405 0.595
32 H 0.410 0.590
33 H 0.104 0.896
34 H 0.121 0.879
35 H 0.103 0.897
36 H 0.285 0.715
37 H 0.114 0.886
38 H 0.077 0.923
39 H 0.108 0.892
40 H 0.107 0.893
41 H 0.087 0.913
42 H 0.090 0.910
43 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.618 -19.683 11.081 23.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.121 4.121
3 C 0.035 3.965
4 N -0.380 5.380
5 C 0.401 3.599
6 O -0.495 6.495
7 N -0.321 5.321
8 C 0.073 3.927
9 C -0.255 4.255
10 C -0.105 4.105
11 C -0.264 4.264
12 C 0.088 3.912
13 C -0.527 4.527
14 H 0.096 0.904
15 C -0.182 4.182
16 N -0.461 5.461
17 Si 0.806 3.194
18 H -0.191 1.191
19 H -0.192 1.192
20 H -0.181 1.181
21 C -0.221 4.221
22 C -0.160 4.160
23 C -0.155 4.155
24 C -0.211 4.211
25 S -0.120 6.120
26 H 0.072 0.928
27 H 0.099 0.901
28 H 0.099 0.901
29 H 0.073 0.927
30 H 0.096 0.904
31 H 0.241 0.759
32 H 0.246 0.754
33 H 0.122 0.878
34 H 0.139 0.861
35 H 0.121 0.879
36 H 0.095 0.905
37 H 0.132 0.868
38 H 0.096 0.904
39 H 0.126 0.874
40 H 0.125 0.875
41 H 0.106 0.894
42 H 0.109 0.891
43 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -4.959 -19.248 10.549 22.503
hybrid contribution 0.072 -0.210 -0.422 0.476
sum -4.887 -19.458 10.127 22.473
Atomic orbital electron populations
1.21932 0.90122 1.03755 1.02896 1.23569 0.99795 0.94238 0.94523
1.21288 0.98354 0.89718 0.87096 1.44915 1.55339 1.09892 1.27886
1.16033 0.80069 0.81986 0.81765 1.90886 1.42360 1.67935 1.48320
1.42434 1.57685 1.08633 1.23313 1.17478 0.99545 0.81543 0.94152
1.20518 1.14780 0.93475 0.96695 1.20741 0.98713 0.94427 0.96668
1.21248 1.13187 0.99384 0.92603 1.17777 0.88238 0.91717 0.93494
1.19784 1.39662 0.98491 0.94733 0.90361 1.26756 0.91785 0.94317
1.05296 1.69878 1.29343 1.10604 1.36243 0.85153 0.79692 0.78834
0.75671 1.19072 1.19209 1.18061 1.21039 1.09594 0.97198 0.94302
1.22475 1.03060 0.94492 0.96010 1.22541 1.01796 0.95915 0.95276
1.24422 1.01517 0.97844 0.97358 1.88127 1.70696 1.34548 1.18669
0.92756 0.90082 0.90125 0.92668 0.90403 0.75883 0.75367 0.87802
0.86111 0.87864 0.90483 0.86806 0.90449 0.87373 0.87466 0.89426
0.89132 0.86860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.73 8.36 71.99 0.60 -1.12 16
2 C -0.01 -0.18 0.77 -10.36 -0.01 -0.19 16
3 C 0.16 3.82 4.53 86.38 0.39 4.22 16
4 N -0.72 -20.49 5.06 -478.54 -2.42 -22.91 16
5 C 0.70 27.48 8.30 179.05 1.49 28.96 16
6 O -0.62 -29.18 14.04 -3.97 -0.06 -29.24 16
7 N -0.67 -27.35 5.34 -317.33 -1.70 -29.04 16
8 C 0.17 8.27 6.26 38.10 0.24 8.51 16
9 C -0.23 -11.60 8.66 22.58 0.20 -11.41 16
10 C -0.09 -4.19 10.02 22.20 0.22 -3.96 16
11 C -0.24 -12.65 9.79 22.75 0.22 -12.42 16
12 C 0.09 5.07 5.56 -21.31 -0.12 4.96 16
13 C -0.50 -27.31 9.06 23.46 0.21 -27.10 16
14 H 0.08 4.12 7.87 -2.91 -0.02 4.09 16
15 C 0.03 1.63 5.26 85.25 0.45 2.08 16
16 N -0.83 -44.81 10.80 21.82 0.24 -44.57 16
17 Si 0.99 38.97 29.57 68.60 2.03 41.00 16
18 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16
19 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16
20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16
21 C -0.20 -10.77 8.57 22.85 0.20 -10.58 16
22 C -0.12 -1.30 5.47 31.32 0.17 -1.13 16
23 C -0.12 -0.93 6.46 31.62 0.20 -0.73 16
24 C -0.06 -0.80 7.39 72.72 0.54 -0.26 16
25 S -0.35 -7.04 21.62 -56.49 -1.22 -8.26 16
26 H 0.05 0.85 6.88 -2.39 -0.02 0.83 16
27 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16
28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
29 H 0.05 1.53 8.13 -2.38 -0.02 1.51 16
30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16
31 H 0.40 9.82 7.03 -92.71 -0.65 9.16 16
32 H 0.41 13.96 8.83 -92.71 -0.82 13.14 16
33 H 0.10 5.11 6.42 -2.91 -0.02 5.09 16
34 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16
35 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16
36 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16
37 H 0.11 6.30 6.17 -2.91 -0.02 6.28 16
38 H 0.08 0.91 7.85 -2.39 -0.02 0.89 16
39 H 0.11 0.76 7.88 -2.39 -0.02 0.74 16
40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16
41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
Total: -1.00 -70.98 360.68 1.44 -69.54
By element:
Atomic # 1 Polarization: 44.09 SS G_CDS: -0.43 Total: 43.65 kcal
Atomic # 6 Polarization: -25.17 SS G_CDS: 5.00 Total: -20.17 kcal
Atomic # 7 Polarization: -92.65 SS G_CDS: -3.88 Total: -96.53 kcal
Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.24 kcal
Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal
Atomic # 16 Polarization: -7.04 SS G_CDS: -1.22 Total: -8.26 kcal
Total: -70.98 1.44 -69.54 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000455924159.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.816 kcal
(2) G-P(sol) polarization free energy of solvation -70.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.164 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.727 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds