Wall clock time and date at job start Tue Mar 31 2020 12:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48506 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99490 * 3 2 1 6 6 H 1.48498 * 109.47531 * 59.99986 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21276 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99585 * 180.02562 * 13 12 11 16 16 S 1.81399 * 109.47113 * 179.97438 * 15 13 12 17 17 C 1.81397 * 103.00427 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47532 * 179.97438 * 17 16 15 19 19 C 1.38670 * 120.42406 * 269.72757 * 18 17 16 20 20 C 1.38629 * 118.42276 * 179.78193 * 19 18 17 21 21 C 1.38228 * 119.15837 * 0.50747 * 20 19 18 22 22 N 1.31849 * 120.76509 * 359.73696 * 21 20 19 23 23 C 1.31889 * 121.72583 * 359.97438 * 22 21 20 24 24 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 25 25 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 26 26 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 28 28 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 29 29 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 30 30 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 31 31 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 32 32 H 1.09002 * 109.47438 * 299.99718 * 15 13 12 33 33 H 1.08999 * 109.47522 * 60.00065 * 15 13 12 34 34 H 1.08998 * 109.47497 * 300.00724 * 17 16 15 35 35 H 1.09007 * 109.46828 * 60.00375 * 17 16 15 36 36 H 1.08007 * 120.78996 * 0.02562 * 19 18 17 37 37 H 1.07994 * 120.41774 * 180.22084 * 20 19 18 38 38 H 1.08000 * 119.61747 * 179.74212 * 21 20 19 39 39 H 1.08000 * 119.61712 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.46843 * 293.57352 * 24 12 11 41 41 H 1.08997 * 109.71602 * 173.28846 * 24 12 11 42 42 H 1.08995 * 109.49643 * 301.32932 * 25 9 7 43 43 H 1.08996 * 109.49892 * 61.43126 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2922 -6.9546 -1.8205 15 6 -0.4779 -6.0481 -3.0912 16 16 -0.2442 -7.5505 -4.0806 17 6 -1.5001 -7.3838 -5.3788 18 6 -1.4325 -8.5751 -6.2992 19 6 -0.6165 -8.5511 -7.4201 20 6 -0.5826 -9.6715 -8.2358 21 6 -1.3659 -10.7637 -7.9127 22 7 -2.1341 -10.7494 -6.8412 23 6 -2.1871 -9.7033 -6.0398 24 6 -0.4199 -3.8913 -1.2280 25 6 0.3707 -2.5793 -1.2487 26 1 -0.4851 0.8400 -0.0004 27 1 0.6246 -2.5568 0.8906 28 1 2.8883 -3.5914 0.8783 29 1 2.8564 -3.6194 -0.9015 30 1 2.1755 -5.8175 -0.0644 31 1 0.9394 -5.0725 0.9795 32 1 -1.4925 -6.0290 -2.6933 33 1 -0.3172 -5.1716 -3.7189 34 1 -2.4890 -7.3317 -4.9233 35 1 -1.3144 -6.4736 -5.9492 36 1 -0.0184 -7.6816 -7.6501 37 1 0.0443 -9.6891 -9.1150 38 1 -1.3484 -11.6389 -8.5453 39 1 -2.8280 -9.7285 -5.1709 40 1 -1.1142 -3.8866 -0.3877 41 1 -0.9750 -3.9982 -2.1599 42 1 -0.3218 -1.7377 -1.2603 43 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543835123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:24 Heat of formation + Delta-G solvation = -7.933158 kcal Electronic energy + Delta-G solvation = -23439.747149 eV Core-core repulsion = 19996.665808 eV Total energy + Delta-G solvation = -3443.081341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43690 -39.71716 -36.88806 -33.98781 -33.61920 -32.22682 -31.76933 -30.40248 -29.38074 -27.72163 -26.10501 -23.89724 -23.10903 -22.57152 -22.31311 -20.11159 -18.45796 -17.46078 -17.11698 -16.73698 -16.51139 -16.24046 -15.53907 -15.46439 -15.22969 -14.63176 -14.39613 -13.82327 -13.74829 -13.52211 -13.37861 -13.24380 -13.07241 -13.02622 -12.69729 -12.61143 -12.13008 -11.94550 -11.67271 -11.39011 -11.01784 -10.67860 -10.46849 -10.32194 -10.20004 -10.01378 -9.80152 -9.77610 -9.56320 -9.24851 -9.21380 -9.00972 -8.45743 -8.13341 -7.75338 -6.10378 -4.16281 0.51370 0.93383 1.56881 2.37946 2.80173 3.22421 3.31318 3.35289 3.37049 3.54847 4.05831 4.34073 4.35302 4.38223 4.62621 4.63063 4.64527 4.94074 4.95561 5.09873 5.14388 5.19557 5.29511 5.43124 5.46880 5.72205 5.76466 5.85559 5.88074 5.97438 6.08101 6.16511 6.34087 6.36115 6.57008 6.79993 6.94606 7.03673 7.17248 7.58420 7.63841 7.76846 7.83336 7.95501 8.32699 8.38313 8.87483 9.49301 10.95273 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.002253 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.101834 B =12427.015688 C =12891.101421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.595 5.595 13 C 0.528 3.472 14 O -0.538 6.538 15 C -0.127 4.127 16 S -0.171 6.171 17 C -0.068 4.068 18 C -0.119 4.119 19 C -0.058 4.058 20 C -0.172 4.172 21 C 0.098 3.902 22 N -0.485 5.485 23 C 0.117 3.883 24 C 0.102 3.898 25 C -0.125 4.125 26 H 0.260 0.740 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 -14.341 -13.404 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.328 5.328 13 C 0.313 3.687 14 O -0.417 6.417 15 C -0.277 4.277 16 S 0.057 5.943 17 C -0.216 4.216 18 C -0.122 4.122 19 C -0.086 4.086 20 C -0.192 4.192 21 C -0.060 4.060 22 N -0.193 5.193 23 C -0.042 4.042 24 C -0.020 4.020 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.524 -16.199 -12.924 21.446 hybrid contribution 0.000 2.991 -0.402 3.018 sum -5.524 -13.208 -13.326 19.558 Atomic orbital electron populations 1.69832 1.05855 1.26423 1.51050 1.24962 0.94889 0.99118 0.95047 0.86553 0.80219 0.83761 0.77585 1.19804 1.21051 1.21022 1.21243 0.93035 0.90504 1.50129 0.92588 1.18644 0.92663 0.91824 0.93935 1.22017 0.98922 0.94092 1.01147 1.21729 0.91630 0.99879 0.87649 1.48174 1.36179 1.20591 1.27890 1.19516 0.84137 0.82501 0.82512 1.90695 1.40936 1.35935 1.74091 1.23598 1.03562 1.00943 0.99646 1.87741 1.47170 1.29015 1.30340 1.22350 1.02178 0.98915 0.98156 1.20208 0.99357 0.96449 0.96229 1.21548 0.95538 0.98655 0.92842 1.22159 1.01187 0.94519 1.01330 1.22827 0.91705 0.97803 0.93617 1.67737 1.19640 1.27516 1.04378 1.22713 0.96262 0.87743 0.97470 1.22096 0.91684 0.87608 1.00657 1.22036 1.00099 0.94450 0.99732 0.93000 0.95369 0.91960 0.92896 0.90210 0.92000 0.87275 0.87094 0.88708 0.88822 0.84456 0.84523 0.82670 0.82526 0.91640 0.91673 0.87628 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.31 55.43 0.63 -23.15 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.26 8.56 -34.44 -0.29 -13.56 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 10 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 11 C 0.11 2.01 6.43 -3.71 -0.02 1.99 16 12 N -0.60 -10.22 2.98 -172.74 -0.51 -10.73 16 13 C 0.53 8.90 7.72 -10.98 -0.08 8.82 16 14 O -0.54 -10.82 15.28 5.56 0.08 -10.73 16 15 C -0.13 -1.60 4.77 36.01 0.17 -1.42 16 16 S -0.17 -2.19 20.86 -107.50 -2.24 -4.44 16 17 C -0.07 -0.58 6.09 36.00 0.22 -0.37 16 18 C -0.12 -1.10 5.16 -104.48 -0.54 -1.63 16 19 C -0.06 -0.48 9.86 -39.28 -0.39 -0.87 16 20 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 21 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 22 N -0.48 -5.13 10.36 -13.25 -0.14 -5.26 16 23 C 0.12 1.14 10.86 -17.55 -0.19 0.95 16 24 C 0.10 1.68 6.33 -3.69 -0.02 1.66 16 25 C -0.12 -2.60 5.15 -26.61 -0.14 -2.74 16 26 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.11 1.13 7.95 -51.92 -0.41 0.72 16 33 H 0.11 1.25 7.69 -51.92 -0.40 0.85 16 34 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.09 0.69 8.09 -51.92 -0.42 0.27 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.88 5.95 -51.93 -0.31 0.57 16 42 H 0.11 2.46 6.03 -51.93 -0.31 2.15 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -30.79 364.49 -10.43 -41.21 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.41 Total: 0.62 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.31 Total: -8.42 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -0.03 Total: -39.15 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.24 Total: -4.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.79 -10.43 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543835123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.281 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds