Wall clock time and date at job start Tue Mar 31 2020 12:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48506 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99490 * 3 2 1 6 6 H 1.48498 * 109.47531 * 59.99986 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21276 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99585 * 180.02562 * 13 12 11 16 16 S 1.81399 * 109.47113 * 179.97438 * 15 13 12 17 17 C 1.81397 * 103.00427 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47532 * 179.97438 * 17 16 15 19 19 C 1.38670 * 120.42406 * 269.72757 * 18 17 16 20 20 C 1.38629 * 118.42276 * 179.78193 * 19 18 17 21 21 C 1.38228 * 119.15837 * 0.50747 * 20 19 18 22 22 N 1.31849 * 120.76509 * 359.73696 * 21 20 19 23 23 C 1.31889 * 121.72583 * 359.97438 * 22 21 20 24 24 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 25 25 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 26 26 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 28 28 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 29 29 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 30 30 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 31 31 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 32 32 H 1.09002 * 109.47438 * 299.99718 * 15 13 12 33 33 H 1.08999 * 109.47522 * 60.00065 * 15 13 12 34 34 H 1.08998 * 109.47497 * 300.00724 * 17 16 15 35 35 H 1.09007 * 109.46828 * 60.00375 * 17 16 15 36 36 H 1.08007 * 120.78996 * 0.02562 * 19 18 17 37 37 H 1.07994 * 120.41774 * 180.22084 * 20 19 18 38 38 H 1.08000 * 119.61747 * 179.74212 * 21 20 19 39 39 H 1.08000 * 119.61712 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.46843 * 293.57352 * 24 12 11 41 41 H 1.08997 * 109.71602 * 173.28846 * 24 12 11 42 42 H 1.08995 * 109.49643 * 301.32932 * 25 9 7 43 43 H 1.08996 * 109.49892 * 61.43126 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2922 -6.9546 -1.8205 15 6 -0.4779 -6.0481 -3.0912 16 16 -0.2442 -7.5505 -4.0806 17 6 -1.5001 -7.3838 -5.3788 18 6 -1.4325 -8.5751 -6.2992 19 6 -0.6165 -8.5511 -7.4201 20 6 -0.5826 -9.6715 -8.2358 21 6 -1.3659 -10.7637 -7.9127 22 7 -2.1341 -10.7494 -6.8412 23 6 -2.1871 -9.7033 -6.0398 24 6 -0.4199 -3.8913 -1.2280 25 6 0.3707 -2.5793 -1.2487 26 1 -0.4851 0.8400 -0.0004 27 1 0.6246 -2.5568 0.8906 28 1 2.8883 -3.5914 0.8783 29 1 2.8564 -3.6194 -0.9015 30 1 2.1755 -5.8175 -0.0644 31 1 0.9394 -5.0725 0.9795 32 1 -1.4925 -6.0290 -2.6933 33 1 -0.3172 -5.1716 -3.7189 34 1 -2.4890 -7.3317 -4.9233 35 1 -1.3144 -6.4736 -5.9492 36 1 -0.0184 -7.6816 -7.6501 37 1 0.0443 -9.6891 -9.1150 38 1 -1.3484 -11.6389 -8.5453 39 1 -2.8280 -9.7285 -5.1709 40 1 -1.1142 -3.8866 -0.3877 41 1 -0.9750 -3.9982 -2.1599 42 1 -0.3218 -1.7377 -1.2603 43 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543835123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:24 Heat of formation + Delta-G solvation = -24.328206 kcal Electronic energy + Delta-G solvation = -23440.458091 eV Core-core repulsion = 19996.665808 eV Total energy + Delta-G solvation = -3443.792283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13019 -41.03192 -38.43348 -35.37031 -34.62548 -33.38052 -32.82725 -31.96688 -30.62343 -28.41146 -27.83051 -24.74044 -24.52333 -23.92477 -23.17445 -21.65134 -19.90861 -18.66441 -18.10055 -17.99554 -17.50419 -17.37325 -16.69106 -16.58914 -16.39613 -16.10491 -15.23182 -14.94602 -14.87723 -14.82731 -14.45739 -14.38757 -14.19459 -13.99606 -13.96154 -13.83468 -13.36803 -13.22905 -13.11778 -12.83005 -12.54246 -12.44052 -12.16179 -11.95107 -11.50220 -11.16351 -11.08259 -11.01830 -10.74255 -10.66112 -10.43408 -10.40091 -9.86968 -9.60681 -8.69775 -8.08913 -6.21326 -0.19511 0.31495 0.74647 1.39486 1.43543 1.51845 1.53035 1.57639 2.07946 2.43638 2.91372 3.17960 3.39892 3.48921 3.73894 3.81631 4.02921 4.04564 4.08117 4.08788 4.24760 4.27556 4.34374 4.42302 4.47881 4.51827 4.56303 4.70595 4.71155 4.84988 4.86207 4.97015 5.17632 5.17669 5.23412 5.27345 5.41675 5.51264 5.64644 5.75444 5.98679 6.13438 6.38534 6.42668 6.87919 7.00540 7.06712 7.46378 8.94640 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.002253 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.101834 B =12427.015688 C =12891.101421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.044 3.956 10 C -0.113 4.113 11 C 0.118 3.882 12 N -0.599 5.599 13 C 0.523 3.477 14 O -0.574 6.574 15 C -0.114 4.114 16 S -0.233 6.233 17 C -0.046 4.046 18 C -0.130 4.130 19 C -0.067 4.067 20 C -0.170 4.170 21 C 0.088 3.912 22 N -0.515 5.515 23 C 0.102 3.898 24 C 0.112 3.888 25 C -0.116 4.116 26 H 0.262 0.738 27 H 0.005 0.995 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.179 0.821 39 H 0.164 0.836 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -14.371 -14.989 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.004 4.004 12 N -0.331 5.331 13 C 0.312 3.688 14 O -0.455 6.455 15 C -0.264 4.264 16 S -0.004 6.004 17 C -0.194 4.194 18 C -0.134 4.134 19 C -0.094 4.094 20 C -0.189 4.189 21 C -0.069 4.069 22 N -0.224 5.224 23 C -0.056 4.056 24 C -0.009 4.009 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.196 0.804 39 H 0.181 0.819 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.332 -16.222 -14.507 22.665 hybrid contribution 0.277 2.956 0.043 2.969 sum -6.054 -13.266 -14.464 20.539 Atomic orbital electron populations 1.69930 1.06664 1.27078 1.51296 1.25594 0.95713 1.01797 0.94908 0.85683 0.78985 0.80397 0.77625 1.19877 1.20503 1.20770 1.21564 0.92863 0.92301 1.50448 0.93653 1.18622 0.93071 0.91766 0.93978 1.21856 0.98350 0.94346 1.00616 1.21584 0.91900 0.98206 0.88743 1.48211 1.36072 1.20998 1.27844 1.20198 0.84259 0.81496 0.82896 1.90681 1.42576 1.37201 1.74995 1.23518 1.03474 1.01294 0.98145 1.87988 1.49896 1.29875 1.32662 1.22344 1.01222 0.99351 0.96486 1.20307 0.99761 0.96538 0.96762 1.21873 0.95315 0.99536 0.92718 1.22485 1.00825 0.93748 1.01893 1.23308 0.91281 0.99037 0.93312 1.67735 1.20914 1.28228 1.05477 1.22915 0.96875 0.87997 0.97844 1.22001 0.90923 0.84985 1.03035 1.21799 0.99435 0.96264 0.98004 0.92885 0.97704 0.91880 0.94034 0.90375 0.90961 0.84395 0.85239 0.86886 0.87117 0.82994 0.81783 0.80432 0.81872 0.91119 0.87709 0.89954 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.63 11.31 21.45 0.24 -48.38 16 2 C 0.02 0.99 5.30 84.65 0.45 1.44 16 3 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -28.11 8.56 25.60 0.22 -27.89 16 8 H 0.05 2.42 7.74 -2.91 -0.02 2.39 16 9 C 0.04 2.05 2.07 -11.51 -0.02 2.02 16 10 C -0.11 -4.55 5.30 30.67 0.16 -4.39 16 11 C 0.12 4.15 6.43 86.36 0.56 4.70 16 12 N -0.60 -19.64 2.98 -818.82 -2.44 -22.08 16 13 C 0.52 16.81 7.72 87.66 0.68 17.48 16 14 O -0.57 -22.76 15.28 -3.02 -0.05 -22.80 16 15 C -0.11 -2.55 4.77 71.24 0.34 -2.21 16 16 S -0.23 -5.58 20.86 -56.49 -1.18 -6.76 16 17 C -0.05 -0.68 6.09 71.23 0.43 -0.24 16 18 C -0.13 -2.17 5.16 -19.78 -0.10 -2.27 16 19 C -0.07 -0.97 9.86 22.47 0.22 -0.75 16 20 C -0.17 -2.15 10.11 22.36 0.23 -1.92 16 21 C 0.09 1.33 11.18 84.69 0.95 2.28 16 22 N -0.51 -10.47 10.36 -195.84 -2.03 -12.49 16 23 C 0.10 1.90 10.86 84.67 0.92 2.82 16 24 C 0.11 3.48 6.33 86.36 0.55 4.03 16 25 C -0.12 -4.81 5.15 30.67 0.16 -4.65 16 26 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 27 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.79 7.01 -2.39 -0.02 2.77 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.14 2.30 7.95 -2.39 -0.02 2.28 16 33 H 0.13 2.44 7.69 -2.39 -0.02 2.42 16 34 H 0.11 1.25 8.09 -2.39 -0.02 1.23 16 35 H 0.11 1.26 8.09 -2.39 -0.02 1.24 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.10 2.43 5.95 -2.39 -0.01 2.41 16 42 H 0.08 3.83 6.03 -2.39 -0.01 3.81 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -67.64 364.49 3.30 -64.34 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.00 Total: 13.76 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.73 Total: -9.54 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -4.23 Total: -82.96 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.18 Total: -6.76 kcal Total: -67.64 3.30 -64.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543835123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.007 kcal (2) G-P(sol) polarization free energy of solvation -67.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds