Wall clock time and date at job start Tue Mar 31 2020 12:12:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30827 * 1
3 3 Si 1.86803 * 119.99758 * 2 1
4 4 H 1.48498 * 109.46824 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47277 * 299.99926 * 3 2 1
6 6 H 1.48495 * 109.47313 * 59.99989 * 3 2 1
7 7 C 1.39924 * 120.00108 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00343 * 195.62491 * 7 2 1
9 9 C 1.41409 * 120.00285 * 15.62689 * 7 2 1
10 10 C 1.40776 * 120.20706 * 29.19856 * 9 7 2
11 11 C 1.37646 * 119.88614 * 179.97438 * 10 9 7
12 12 C 1.38535 * 120.31852 * 0.02562 * 11 10 9
13 13 C 1.39243 * 120.42723 * 0.25451 * 12 11 10
14 14 N 1.39956 * 119.94613 * 179.74263 * 13 12 11
15 15 C 1.34777 * 120.00242 * 213.03284 * 14 13 12
16 16 O 1.21587 * 119.99730 * 5.15255 * 15 14 13
17 17 N 1.34776 * 119.99843 * 185.14261 * 15 14 13
18 18 C 1.46499 * 119.99680 * 180.02562 * 17 15 14
19 19 C 1.53001 * 109.47275 * 180.02562 * 18 17 15
20 20 H 1.09000 * 109.39112 * 304.80615 * 19 18 17
21 21 C 1.52573 * 109.39577 * 185.00224 * 19 18 17
22 22 C 1.52581 * 110.73380 * 169.17540 * 21 19 18
23 23 C 1.53096 * 109.95140 * 70.67301 * 22 21 19
24 24 S 1.81751 * 108.84490 * 296.97696 * 23 22 21
25 25 C 1.53105 * 109.38880 * 64.50631 * 19 18 17
26 26 C 1.38278 * 120.10793 * 359.48671 * 13 12 11
27 27 H 0.97005 * 120.00424 * 0.02562 * 1 2 3
28 28 H 1.08002 * 120.06267 * 359.96200 * 10 9 7
29 29 H 1.08002 * 119.83932 * 179.97438 * 11 10 9
30 30 H 1.07999 * 119.78566 * 179.97438 * 12 11 10
31 31 H 0.97001 * 119.99667 * 33.03700 * 14 13 12
32 32 H 0.97000 * 120.00371 * 0.02562 * 17 15 14
33 33 H 1.08997 * 109.47540 * 300.00308 * 18 17 15
34 34 H 1.09003 * 109.46976 * 60.00865 * 18 17 15
35 35 H 1.09004 * 109.22623 * 289.49987 * 21 19 18
36 36 H 1.09007 * 109.22845 * 48.85186 * 21 19 18
37 37 H 1.08996 * 109.39508 * 190.82217 * 22 21 19
38 38 H 1.08997 * 109.38814 * 310.53392 * 22 21 19
39 39 H 1.09004 * 109.57751 * 56.78873 * 23 22 21
40 40 H 1.09003 * 109.57473 * 177.17085 * 23 22 21
41 41 H 1.09004 * 109.57484 * 302.98367 * 25 19 18
42 42 H 1.08991 * 109.57143 * 63.36860 * 25 19 18
43 43 H 1.07997 * 120.16131 * 180.23341 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 3.7022 1.3464 -0.0006
5 1 1.8835 2.3965 -1.2125
6 1 1.8835 2.3965 1.2124
7 6 2.0079 -1.2118 -0.0005
8 1 3.0580 -1.2292 0.2514
9 6 1.3402 -2.4137 -0.3310
10 6 0.2414 -2.3946 -1.2108
11 6 -0.4034 -3.5686 -1.5283
12 6 0.0233 -4.7697 -0.9857
13 6 1.1049 -4.8030 -0.1095
14 7 1.5241 -6.0213 0.4370
15 6 2.0390 -6.0599 1.6820
16 8 2.0533 -5.0543 2.3653
17 7 2.5379 -7.2131 2.1694
18 6 3.0971 -7.2552 3.5228
19 6 3.5910 -8.6710 3.8269
20 1 2.7768 -9.3792 3.6729
21 6 4.0583 -8.7440 5.2774
22 6 4.3050 -10.1912 5.6933
23 6 5.5531 -10.7312 4.9900
24 16 5.2611 -10.7344 3.1962
25 6 4.7485 -9.0183 2.8869
26 6 1.7690 -3.6349 0.2174
27 1 -0.4851 0.8401 -0.0004
28 1 -0.0953 -1.4606 -1.6358
29 1 -1.2466 -3.5530 -2.2030
30 1 -0.4892 -5.6856 -1.2404
31 1 1.4441 -6.8380 -0.0803
32 1 2.5267 -8.0153 1.6241
33 1 3.9310 -6.5569 3.5933
34 1 2.3276 -6.9761 4.2427
35 1 4.9829 -8.1768 5.3857
36 1 3.2944 -8.3103 5.9230
37 1 4.4490 -10.2381 6.7727
38 1 3.4431 -10.7988 5.4178
39 1 6.4067 -10.0935 5.2200
40 1 5.7524 -11.7477 5.3294
41 1 4.4220 -8.9155 1.8520
42 1 5.5863 -8.3472 3.0759
43 1 2.6104 -3.6603 0.8940
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000562625819.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:12:21
Heat of formation + Delta-G solvation = -23.963507 kcal
Electronic energy + Delta-G solvation = -23747.561159 eV
Core-core repulsion = 20303.784691 eV
Total energy + Delta-G solvation = -3443.776469 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.00089 -38.19585 -37.12229 -34.65128 -34.25520 -32.98770 -31.72555 -29.76203
-28.20594 -27.77374 -25.99760 -25.20667 -22.61633 -21.43424 -20.90148 -20.80392
-19.92049 -18.02911 -17.65602 -16.97848 -15.93010 -15.86108 -15.38787 -15.05402
-14.88598 -14.62560 -14.30122 -14.14367 -13.90342 -13.76517 -13.41131 -13.08199
-12.82184 -12.78761 -12.40631 -12.12298 -11.82050 -11.72385 -11.60482 -11.32068
-11.23454 -11.06953 -10.85571 -10.60314 -10.47023 -10.13998 -10.03044 -9.68412
-9.54858 -9.17251 -8.91606 -8.86385 -8.04197 -7.36065 -6.81531 -6.65081
-4.27966 1.40501 2.15242 2.76338 2.89413 3.05022 3.13769 3.19887
3.23819 3.74870 4.02317 4.17754 4.23422 4.37836 4.46533 4.59968
4.68967 4.72299 4.83716 5.04394 5.11784 5.28518 5.29308 5.36457
5.49234 5.57040 5.68686 5.73224 5.75692 5.91754 6.26291 6.43263
6.55265 6.79480 6.83077 7.08864 7.14480 7.27780 7.38709 7.73551
7.86088 8.02336 8.15273 8.29859 8.47219 8.71570 8.94917 9.02885
9.08622 10.31346
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.020830 B = 0.002419 C = 0.002269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1343.894825 B =11572.538556 C =12334.934808
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.798 5.798
2 C 0.076 3.924
3 Si 0.907 3.093
4 H -0.261 1.261
5 H -0.273 1.273
6 H -0.275 1.275
7 C -0.461 4.461
8 H 0.077 0.923
9 C 0.122 3.878
10 C -0.170 4.170
11 C -0.092 4.092
12 C -0.262 4.262
13 C 0.169 3.831
14 N -0.682 5.682
15 C 0.696 3.304
16 O -0.562 6.562
17 N -0.752 5.752
18 C 0.148 3.852
19 C -0.099 4.099
20 H 0.090 0.910
21 C -0.123 4.123
22 C -0.120 4.120
23 C -0.083 4.083
24 S -0.270 6.270
25 C -0.076 4.076
26 C -0.208 4.208
27 H 0.278 0.722
28 H 0.114 0.886
29 H 0.091 0.909
30 H 0.088 0.912
31 H 0.394 0.606
32 H 0.392 0.608
33 H 0.068 0.932
34 H 0.070 0.930
35 H 0.069 0.931
36 H 0.079 0.921
37 H 0.076 0.924
38 H 0.077 0.923
39 H 0.083 0.917
40 H 0.103 0.897
41 H 0.106 0.894
42 H 0.087 0.913
43 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.578 -19.067 7.829 21.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.424 5.424
2 C -0.141 4.141
3 Si 0.732 3.268
4 H -0.185 1.185
5 H -0.198 1.198
6 H -0.201 1.201
7 C -0.491 4.491
8 H 0.095 0.905
9 C 0.119 3.881
10 C -0.190 4.190
11 C -0.111 4.111
12 C -0.283 4.283
13 C 0.077 3.923
14 N -0.328 5.328
15 C 0.397 3.603
16 O -0.437 6.437
17 N -0.410 5.410
18 C 0.021 3.979
19 C -0.119 4.119
20 H 0.108 0.892
21 C -0.161 4.161
22 C -0.159 4.159
23 C -0.231 4.231
24 S -0.043 6.043
25 C -0.224 4.224
26 C -0.230 4.230
27 H 0.089 0.911
28 H 0.132 0.868
29 H 0.110 0.890
30 H 0.107 0.893
31 H 0.227 0.773
32 H 0.225 0.775
33 H 0.086 0.914
34 H 0.089 0.911
35 H 0.088 0.912
36 H 0.097 0.903
37 H 0.094 0.906
38 H 0.095 0.905
39 H 0.102 0.898
40 H 0.121 0.879
41 H 0.124 0.876
42 H 0.106 0.894
43 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 7.569 -18.840 7.783 21.744
hybrid contribution 0.095 0.895 0.389 0.980
sum 7.664 -17.946 8.171 21.155
Atomic orbital electron populations
1.69838 1.07476 1.28897 1.36186 1.25860 0.94732 1.01107 0.92403
0.86283 0.80978 0.81138 0.78409 1.18477 1.19814 1.20079 1.19533
0.97337 0.90849 1.41388 0.90516 1.17495 0.90859 0.91720 0.88034
1.21248 1.00110 0.96489 1.01111 1.20440 0.98507 0.92734 0.99448
1.20009 1.01400 0.97177 1.09738 1.17238 0.94998 0.83593 0.96507
1.42594 1.65473 1.10076 1.14662 1.15976 0.78866 0.83570 0.81924
1.91007 1.61327 1.32974 1.58380 1.45130 1.67228 1.11258 1.17410
1.21172 0.98463 0.95165 0.83064 1.21622 0.97650 0.97530 0.95130
0.89156 1.21505 1.02618 0.96864 0.95149 1.21709 0.97362 0.96360
1.00472 1.23479 1.00986 1.05377 0.93276 1.86981 1.89321 1.17215
1.10762 1.23575 1.00858 0.94578 1.03410 1.21007 1.04382 0.91683
1.05882 0.91096 0.86838 0.89034 0.89337 0.77313 0.77489 0.91385
0.91133 0.91232 0.90265 0.90553 0.90468 0.89803 0.87870 0.87610
0.89411 0.87390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -21.54 11.15 55.55 0.62 -20.92 16
2 C 0.08 1.99 5.15 -17.35 -0.09 1.90 16
3 Si 0.91 19.48 29.59 -169.99 -5.03 14.45 16
4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16
5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
6 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16
7 C -0.46 -12.89 9.04 -37.74 -0.34 -13.23 16
8 H 0.08 2.09 7.89 -52.49 -0.41 1.68 16
9 C 0.12 3.41 5.52 -106.85 -0.59 2.82 16
10 C -0.17 -4.52 8.66 -38.84 -0.34 -4.85 16
11 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16
12 C -0.26 -5.83 9.97 -39.10 -0.39 -6.22 16
13 C 0.17 3.88 6.28 -83.76 -0.53 3.36 16
14 N -0.68 -12.27 5.35 -14.27 -0.08 -12.34 16
15 C 0.70 12.69 8.30 -86.92 -0.72 11.97 16
16 O -0.56 -13.20 14.01 5.29 0.07 -13.13 16
17 N -0.75 -9.25 5.25 -65.23 -0.34 -9.59 16
18 C 0.15 1.59 5.04 -4.04 -0.02 1.57 16
19 C -0.10 -0.74 2.08 -90.78 -0.19 -0.93 16
20 H 0.09 0.68 8.06 -51.93 -0.42 0.26 16
21 C -0.12 -0.79 4.92 -27.16 -0.13 -0.93 16
22 C -0.12 -0.67 5.75 -26.90 -0.15 -0.82 16
23 C -0.08 -0.51 6.45 37.21 0.24 -0.27 16
24 S -0.27 -2.29 22.33 -107.50 -2.40 -4.69 16
25 C -0.08 -0.60 5.63 37.21 0.21 -0.39 16
26 C -0.21 -5.49 8.39 -38.69 -0.32 -5.82 16
27 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16
28 H 0.11 3.09 6.43 -52.49 -0.34 2.75 16
29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16
30 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16
31 H 0.39 5.38 8.83 -40.82 -0.36 5.02 16
32 H 0.39 3.58 7.64 -40.82 -0.31 3.27 16
33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
34 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16
35 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16
36 H 0.08 0.50 8.05 -51.92 -0.42 0.08 16
37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
38 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16
39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.11 0.83 7.08 -51.93 -0.37 0.46 16
42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
43 H 0.11 2.96 6.39 -52.49 -0.34 2.63 16
LS Contribution 359.92 15.07 5.42 5.42
Total: -1.00 -32.65 359.92 -11.81 -44.46
By element:
Atomic # 1 Polarization: 17.07 SS G_CDS: -6.32 Total: 10.75 kcal
Atomic # 6 Polarization: -10.65 SS G_CDS: -3.76 Total: -14.41 kcal
Atomic # 7 Polarization: -43.06 SS G_CDS: 0.20 Total: -42.86 kcal
Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.13 kcal
Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal
Atomic # 16 Polarization: -2.29 SS G_CDS: -2.40 Total: -4.69 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -32.65 -11.81 -44.46 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000562625819.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.501 kcal
(2) G-P(sol) polarization free energy of solvation -32.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.810 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.964 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds