Wall clock time and date at job start Tue Mar 31 2020 12:12:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30827 * 1
3 3 Si 1.86803 * 119.99758 * 2 1
4 4 H 1.48498 * 109.46824 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47277 * 299.99926 * 3 2 1
6 6 H 1.48495 * 109.47313 * 59.99989 * 3 2 1
7 7 C 1.39924 * 120.00108 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00343 * 195.62491 * 7 2 1
9 9 C 1.41409 * 120.00285 * 15.62689 * 7 2 1
10 10 C 1.40776 * 120.20706 * 29.19856 * 9 7 2
11 11 C 1.37646 * 119.88614 * 179.97438 * 10 9 7
12 12 C 1.38535 * 120.31852 * 0.02562 * 11 10 9
13 13 C 1.39243 * 120.42723 * 0.25451 * 12 11 10
14 14 N 1.39956 * 119.94613 * 179.74263 * 13 12 11
15 15 C 1.34777 * 120.00242 * 213.03284 * 14 13 12
16 16 O 1.21587 * 119.99730 * 5.15255 * 15 14 13
17 17 N 1.34776 * 119.99843 * 185.14261 * 15 14 13
18 18 C 1.46499 * 119.99680 * 180.02562 * 17 15 14
19 19 C 1.53001 * 109.47275 * 180.02562 * 18 17 15
20 20 H 1.09000 * 109.39112 * 304.80615 * 19 18 17
21 21 C 1.52573 * 109.39577 * 185.00224 * 19 18 17
22 22 C 1.52581 * 110.73380 * 169.17540 * 21 19 18
23 23 C 1.53096 * 109.95140 * 70.67301 * 22 21 19
24 24 S 1.81751 * 108.84490 * 296.97696 * 23 22 21
25 25 C 1.53105 * 109.38880 * 64.50631 * 19 18 17
26 26 C 1.38278 * 120.10793 * 359.48671 * 13 12 11
27 27 H 0.97005 * 120.00424 * 0.02562 * 1 2 3
28 28 H 1.08002 * 120.06267 * 359.96200 * 10 9 7
29 29 H 1.08002 * 119.83932 * 179.97438 * 11 10 9
30 30 H 1.07999 * 119.78566 * 179.97438 * 12 11 10
31 31 H 0.97001 * 119.99667 * 33.03700 * 14 13 12
32 32 H 0.97000 * 120.00371 * 0.02562 * 17 15 14
33 33 H 1.08997 * 109.47540 * 300.00308 * 18 17 15
34 34 H 1.09003 * 109.46976 * 60.00865 * 18 17 15
35 35 H 1.09004 * 109.22623 * 289.49987 * 21 19 18
36 36 H 1.09007 * 109.22845 * 48.85186 * 21 19 18
37 37 H 1.08996 * 109.39508 * 190.82217 * 22 21 19
38 38 H 1.08997 * 109.38814 * 310.53392 * 22 21 19
39 39 H 1.09004 * 109.57751 * 56.78873 * 23 22 21
40 40 H 1.09003 * 109.57473 * 177.17085 * 23 22 21
41 41 H 1.09004 * 109.57484 * 302.98367 * 25 19 18
42 42 H 1.08991 * 109.57143 * 63.36860 * 25 19 18
43 43 H 1.07997 * 120.16131 * 180.23341 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 3.7022 1.3464 -0.0006
5 1 1.8835 2.3965 -1.2125
6 1 1.8835 2.3965 1.2124
7 6 2.0079 -1.2118 -0.0005
8 1 3.0580 -1.2292 0.2514
9 6 1.3402 -2.4137 -0.3310
10 6 0.2414 -2.3946 -1.2108
11 6 -0.4034 -3.5686 -1.5283
12 6 0.0233 -4.7697 -0.9857
13 6 1.1049 -4.8030 -0.1095
14 7 1.5241 -6.0213 0.4370
15 6 2.0390 -6.0599 1.6820
16 8 2.0533 -5.0543 2.3653
17 7 2.5379 -7.2131 2.1694
18 6 3.0971 -7.2552 3.5228
19 6 3.5910 -8.6710 3.8269
20 1 2.7768 -9.3792 3.6729
21 6 4.0583 -8.7440 5.2774
22 6 4.3050 -10.1912 5.6933
23 6 5.5531 -10.7312 4.9900
24 16 5.2611 -10.7344 3.1962
25 6 4.7485 -9.0183 2.8869
26 6 1.7690 -3.6349 0.2174
27 1 -0.4851 0.8401 -0.0004
28 1 -0.0953 -1.4606 -1.6358
29 1 -1.2466 -3.5530 -2.2030
30 1 -0.4892 -5.6856 -1.2404
31 1 1.4441 -6.8380 -0.0803
32 1 2.5267 -8.0153 1.6241
33 1 3.9310 -6.5569 3.5933
34 1 2.3276 -6.9761 4.2427
35 1 4.9829 -8.1768 5.3857
36 1 3.2944 -8.3103 5.9230
37 1 4.4490 -10.2381 6.7727
38 1 3.4431 -10.7988 5.4178
39 1 6.4067 -10.0935 5.2200
40 1 5.7524 -11.7477 5.3294
41 1 4.4220 -8.9155 1.8520
42 1 5.5863 -8.3472 3.0759
43 1 2.6104 -3.6603 0.8940
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000562625819.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:12:21
Heat of formation + Delta-G solvation = -43.819151 kcal
Electronic energy + Delta-G solvation = -23748.422165 eV
Core-core repulsion = 20303.784691 eV
Total energy + Delta-G solvation = -3444.637474 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.47871 -39.40216 -38.51202 -36.18979 -35.55603 -34.78611 -32.58476 -31.72911
-29.86545 -28.42377 -27.28299 -26.87610 -23.67352 -22.83788 -22.53217 -21.84420
-21.24371 -19.57095 -19.27303 -17.82436 -17.48232 -17.05017 -16.69787 -16.44940
-16.12921 -16.08623 -15.63808 -15.24653 -14.94479 -14.74378 -14.59174 -14.37604
-14.12449 -13.89778 -13.68083 -13.51385 -13.18799 -13.11845 -12.82062 -12.55730
-12.35844 -12.26520 -12.20999 -12.01251 -11.82822 -11.55893 -11.47848 -11.30420
-11.03271 -10.71445 -10.63506 -10.13910 -9.34230 -8.69918 -8.66373 -8.59273
-6.35729 0.80805 0.93565 1.03592 1.36362 1.48228 1.52240 1.56512
1.68293 2.18497 2.23320 2.76607 3.27731 3.55631 3.65786 3.74689
3.80636 3.91881 4.12609 4.28529 4.40961 4.47801 4.54349 4.59548
4.64894 4.69421 4.74434 4.82805 5.01853 5.05491 5.06908 5.11909
5.13267 5.14291 5.19807 5.32644 5.33496 5.44580 5.72798 5.84677
6.06540 6.11178 6.18798 6.39119 6.70285 6.95920 7.02143 7.10208
7.60572 8.38221
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.020830 B = 0.002419 C = 0.002269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1343.894825 B =11572.538556 C =12334.934808
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.831 5.831
2 C 0.034 3.966
3 Si 0.983 3.017
4 H -0.262 1.262
5 H -0.258 1.258
6 H -0.267 1.267
7 C -0.505 4.505
8 H 0.064 0.936
9 C 0.090 3.910
10 C -0.195 4.195
11 C -0.091 4.091
12 C -0.248 4.248
13 C 0.177 3.823
14 N -0.670 5.670
15 C 0.693 3.307
16 O -0.618 6.618
17 N -0.725 5.725
18 C 0.147 3.853
19 C -0.082 4.082
20 H 0.099 0.901
21 C -0.124 4.124
22 C -0.114 4.114
23 C -0.076 4.076
24 S -0.304 6.304
25 C -0.071 4.071
26 C -0.234 4.234
27 H 0.287 0.713
28 H 0.098 0.902
29 H 0.125 0.875
30 H 0.133 0.867
31 H 0.418 0.582
32 H 0.412 0.588
33 H 0.054 0.946
34 H 0.062 0.938
35 H 0.068 0.932
36 H 0.082 0.918
37 H 0.093 0.907
38 H 0.077 0.923
39 H 0.088 0.912
40 H 0.115 0.885
41 H 0.106 0.894
42 H 0.083 0.917
43 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.321 -21.065 7.968 23.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.457 5.457
2 C -0.180 4.180
3 Si 0.804 3.196
4 H -0.186 1.186
5 H -0.182 1.182
6 H -0.191 1.191
7 C -0.535 4.535
8 H 0.082 0.918
9 C 0.088 3.912
10 C -0.215 4.215
11 C -0.109 4.109
12 C -0.270 4.270
13 C 0.083 3.917
14 N -0.318 5.318
15 C 0.393 3.607
16 O -0.497 6.497
17 N -0.383 5.383
18 C 0.022 3.978
19 C -0.103 4.103
20 H 0.117 0.883
21 C -0.162 4.162
22 C -0.153 4.153
23 C -0.224 4.224
24 S -0.077 6.077
25 C -0.219 4.219
26 C -0.256 4.256
27 H 0.098 0.902
28 H 0.116 0.884
29 H 0.143 0.857
30 H 0.151 0.849
31 H 0.256 0.744
32 H 0.249 0.751
33 H 0.073 0.927
34 H 0.080 0.920
35 H 0.087 0.913
36 H 0.101 0.899
37 H 0.112 0.888
38 H 0.095 0.905
39 H 0.106 0.894
40 H 0.133 0.867
41 H 0.124 0.876
42 H 0.102 0.898
43 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 7.320 -20.949 7.906 23.558
hybrid contribution 0.165 1.302 0.389 1.369
sum 7.486 -19.647 8.295 22.602
Atomic orbital electron populations
1.69879 1.08831 1.30358 1.36654 1.26717 0.95608 1.04328 0.91302
0.85158 0.79176 0.76184 0.79113 1.18577 1.18188 1.19143 1.19726
0.97179 0.92525 1.44045 0.91758 1.17838 0.91971 0.92459 0.88975
1.21212 1.00867 0.97271 1.02111 1.20830 0.98741 0.92131 0.99248
1.20452 1.00279 0.98410 1.07844 1.17287 0.94346 0.84324 0.95792
1.42333 1.65100 1.09503 1.14870 1.16212 0.78657 0.84191 0.81606
1.90984 1.63399 1.35515 1.59841 1.44906 1.65188 1.10139 1.18059
1.21289 0.97649 0.97149 0.81762 1.21509 0.97683 0.95108 0.95984
0.88327 1.21527 1.02684 0.97808 0.94193 1.21676 0.96985 0.95274
1.01382 1.23561 1.01466 1.06305 0.91018 1.87111 1.89473 1.17520
1.13599 1.23517 1.00740 0.94178 1.03456 1.20952 1.04925 0.93082
1.06651 0.90209 0.88365 0.85750 0.84884 0.74388 0.75123 0.92745
0.91954 0.91302 0.89922 0.88817 0.90475 0.89377 0.86682 0.87602
0.89811 0.89716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -46.21 11.15 21.82 0.24 -45.97 16
2 C 0.03 1.86 5.15 85.25 0.44 2.30 16
3 Si 0.98 41.04 29.59 68.60 2.03 43.07 16
4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16
5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16
6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16
7 C -0.50 -29.84 9.04 23.46 0.21 -29.63 16
8 H 0.06 3.78 7.89 -2.91 -0.02 3.75 16
9 C 0.09 5.29 5.52 -21.31 -0.12 5.17 16
10 C -0.19 -10.62 8.66 22.75 0.20 -10.42 16
11 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16
12 C -0.25 -10.45 9.97 22.58 0.23 -10.23 16
13 C 0.18 8.02 6.28 38.09 0.24 8.26 16
14 N -0.67 -23.09 5.35 -317.33 -1.70 -24.79 16
15 C 0.69 25.01 8.30 179.05 1.49 26.50 16
16 O -0.62 -29.95 14.01 -3.99 -0.06 -30.01 16
17 N -0.73 -16.90 5.25 -478.53 -2.51 -19.42 16
18 C 0.15 3.07 5.04 86.38 0.44 3.50 16
19 C -0.08 -1.10 2.08 -10.90 -0.02 -1.13 16
20 H 0.10 1.22 8.06 -2.39 -0.02 1.21 16
21 C -0.12 -1.37 4.92 30.31 0.15 -1.22 16
22 C -0.11 -0.98 5.75 30.49 0.18 -0.80 16
23 C -0.08 -0.76 6.45 72.01 0.46 -0.30 16
24 S -0.30 -4.69 22.33 -56.49 -1.26 -5.95 16
25 C -0.07 -1.01 5.63 72.02 0.41 -0.61 16
26 C -0.23 -12.88 8.39 22.85 0.19 -12.69 16
27 H 0.29 14.33 8.30 -92.70 -0.77 13.56 16
28 H 0.10 5.56 6.43 -2.91 -0.02 5.54 16
29 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16
30 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16
31 H 0.42 10.12 8.83 -92.71 -0.82 9.30 16
32 H 0.41 6.50 7.64 -92.71 -0.71 5.79 16
33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
34 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16
35 H 0.07 0.79 8.08 -2.38 -0.02 0.77 16
36 H 0.08 0.89 8.05 -2.38 -0.02 0.87 16
37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16
38 H 0.08 0.70 8.06 -2.39 -0.02 0.69 16
39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
40 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16
41 H 0.11 1.49 7.08 -2.39 -0.02 1.47 16
42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
43 H 0.08 4.96 6.39 -2.91 -0.02 4.95 16
Total: -1.00 -75.34 359.92 0.95 -74.39
By element:
Atomic # 1 Polarization: 34.40 SS G_CDS: -0.49 Total: 33.91 kcal
Atomic # 6 Polarization: -29.94 SS G_CDS: 4.70 Total: -25.24 kcal
Atomic # 7 Polarization: -86.20 SS G_CDS: -3.97 Total: -90.17 kcal
Atomic # 8 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.01 kcal
Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal
Atomic # 16 Polarization: -4.69 SS G_CDS: -1.26 Total: -5.95 kcal
Total: -75.34 0.95 -74.39 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000562625819.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.568 kcal
(2) G-P(sol) polarization free energy of solvation -75.340 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.819 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds