Wall clock time and date at job start Tue Mar 31 2020 12:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48497 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46951 * 300.00058 * 3 2 1 6 6 H 1.48505 * 109.47114 * 59.99962 * 3 2 1 7 7 C 1.37881 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46847 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46105 * 184.99820 * 10 9 7 12 12 C 1.53194 * 109.31311 * 178.61467 * 11 10 9 13 13 N 1.46927 * 108.77405 * 54.63652 * 12 11 10 14 14 C 1.34777 * 120.62770 * 126.36861 * 13 12 11 15 15 O 1.21687 * 120.00367 * 3.84428 * 14 13 12 16 16 C 1.46681 * 119.99879 * 183.56948 * 14 13 12 17 17 C 1.35664 * 126.12908 * 135.96792 * 16 14 13 18 18 N 1.30949 * 114.18950 * 179.82712 * 17 16 14 19 19 C 1.29427 * 117.36095 * 0.48429 * 18 17 16 20 20 C 1.50703 * 124.80126 * 179.70762 * 19 18 17 21 21 C 1.52992 * 117.49937 * 8.65276 * 20 19 18 22 22 C 1.52995 * 117.49966 * 300.02411 * 20 19 18 23 23 S 1.70954 * 110.39418 * 359.73111 * 19 18 17 24 24 C 1.46916 * 118.73979 * 306.64121 * 13 12 11 25 25 C 1.52768 * 109.00833 * 53.30884 * 24 13 12 26 26 H 0.97004 * 120.00092 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47111 * 59.99927 * 9 7 2 28 28 H 1.08995 * 109.47293 * 299.99288 * 9 7 2 29 29 H 1.09003 * 109.45077 * 304.96677 * 10 9 7 30 30 H 1.09004 * 109.49850 * 58.66355 * 11 10 9 31 31 H 1.09001 * 109.49785 * 298.56731 * 11 10 9 32 32 H 1.09001 * 109.58905 * 294.84903 * 12 11 10 33 33 H 1.09009 * 109.70073 * 174.49398 * 12 11 10 34 34 H 1.07996 * 122.90305 * 0.02738 * 17 16 14 35 35 H 1.09001 * 115.54927 * 154.35619 * 20 19 18 36 36 H 1.09006 * 117.50115 * 359.97438 * 21 20 19 37 37 H 1.08999 * 117.50183 * 145.01885 * 21 20 19 38 38 H 1.08996 * 117.50068 * 214.97265 * 22 20 19 39 39 H 1.08995 * 117.49880 * 359.97438 * 22 20 19 40 40 H 1.09000 * 109.58980 * 173.14548 * 24 13 12 41 41 H 1.09004 * 109.58667 * 293.57176 * 24 13 12 42 42 H 1.09000 * 109.56384 * 185.55196 * 25 24 13 43 43 H 1.08996 * 109.35545 * 65.50234 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4840 -4.9837 -0.1252 12 6 2.4844 -6.1433 -0.1597 13 7 3.3505 -6.0560 1.0240 14 6 3.4916 -7.1110 1.8509 15 8 2.9550 -8.1699 1.5833 16 6 4.2970 -6.9845 3.0702 17 6 3.9629 -7.4470 4.3011 18 7 4.8591 -7.2082 5.2255 19 6 5.9256 -6.5675 4.8687 20 6 7.0574 -6.1992 5.7930 21 6 7.0343 -6.7846 7.2063 22 6 6.7301 -5.3011 6.9876 23 16 5.8683 -6.1976 3.2006 24 6 4.0549 -4.7950 1.2925 25 6 3.0412 -3.6522 1.3076 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.9288 -3.5552 -0.8418 30 1 0.8989 -4.9805 -1.0449 31 1 0.8182 -5.1028 0.7296 32 1 3.0915 -6.0755 -1.0624 33 1 1.9477 -7.0921 -0.1507 34 1 3.0393 -7.9699 4.5005 35 1 8.0296 -6.0697 5.3175 36 1 6.2002 -7.4358 7.4678 37 1 7.9913 -7.0405 7.6609 38 1 7.4872 -4.5811 7.2983 39 1 5.6963 -4.9763 7.1048 40 1 4.5524 -4.8532 2.2606 41 1 4.7927 -4.6150 0.5105 42 1 3.5646 -2.7014 1.4077 43 1 2.3609 -3.7839 2.1489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570572391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:38 Heat of formation + Delta-G solvation = 24.211303 kcal Electronic energy + Delta-G solvation = -24266.855871 eV Core-core repulsion = 20825.168418 eV Total energy + Delta-G solvation = -3441.687452 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49664 -39.66676 -37.50580 -37.03686 -34.11029 -32.31012 -31.32477 -30.20511 -28.18169 -26.75339 -24.74445 -23.34724 -22.82165 -22.68890 -22.09112 -20.77338 -19.48387 -18.70248 -18.28988 -16.93512 -16.45025 -16.31968 -15.81236 -15.32870 -14.77406 -14.64325 -14.54526 -14.35227 -13.88862 -13.74730 -13.16631 -13.08533 -12.88192 -12.54612 -12.38058 -11.90415 -11.86024 -11.74131 -11.25909 -11.20388 -11.05605 -11.00530 -10.87965 -10.76498 -10.54796 -10.22020 -10.15382 -9.83367 -9.81100 -9.44236 -9.26229 -9.00270 -8.92570 -8.48472 -8.39209 -6.03846 -4.06113 0.12554 0.88896 1.35230 2.33241 2.80364 3.11196 3.27102 3.35290 3.37671 3.47915 3.76326 4.39394 4.41623 4.44889 4.47645 4.61042 4.97819 5.01188 5.13705 5.29847 5.31054 5.31942 5.38587 5.42616 5.43876 5.59562 5.65495 5.66797 5.82551 5.90029 5.90805 5.96839 6.27202 6.31102 6.43953 6.56870 6.87418 6.92008 7.04283 7.33034 7.44947 7.62506 7.76367 7.95507 8.04043 8.37499 9.00524 9.58006 11.07402 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003440 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.035483 B = 8136.786927 C = 9747.772108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.114 3.886 13 N -0.595 5.595 14 C 0.594 3.406 15 O -0.533 6.533 16 C -0.287 4.287 17 C 0.111 3.889 18 N -0.478 5.478 19 C 0.072 3.928 20 C -0.103 4.103 21 C -0.149 4.149 22 C -0.153 4.153 23 S 0.195 5.805 24 C 0.092 3.908 25 C -0.117 4.117 26 H 0.260 0.740 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.184 0.816 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.685 -12.745 9.658 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.008 4.008 13 N -0.327 5.327 14 C 0.380 3.620 15 O -0.412 6.412 16 C -0.411 4.411 17 C -0.045 4.045 18 N -0.192 5.192 19 C -0.202 4.202 20 C -0.125 4.125 21 C -0.188 4.188 22 C -0.192 4.192 23 S 0.454 5.546 24 C -0.031 4.031 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.201 0.799 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.904 -12.822 9.312 21.754 hybrid contribution -0.447 0.661 0.116 0.807 sum 14.457 -12.161 9.428 21.113 Atomic orbital electron populations 1.69970 1.06066 1.26471 1.50879 1.25026 0.94797 0.99213 0.95428 0.86595 0.80112 0.84053 0.77591 1.19733 1.21072 1.21077 1.21262 0.92948 0.90917 1.50383 0.92530 1.19124 0.93575 0.90968 0.97271 1.21206 0.98034 0.94734 0.95964 1.22047 0.97589 0.94669 1.02515 1.21758 0.92475 1.00613 0.85909 1.48056 1.46542 1.12394 1.25706 1.16792 0.80088 0.83888 0.81269 1.90817 1.49443 1.27234 1.73712 1.25709 1.01833 1.13112 1.00436 1.21994 0.99173 0.97590 0.85789 1.66088 1.01775 1.15527 1.35765 1.26541 0.97382 0.99009 0.97230 1.20563 0.94915 1.08177 0.88804 1.23023 1.04067 0.96672 0.94992 1.23077 1.03658 0.93882 0.98542 1.84054 1.14155 1.49651 1.06700 1.22219 0.95728 0.83882 1.01272 1.21813 0.97465 0.96909 0.99289 0.93067 0.96503 0.96611 0.92183 0.90776 0.91941 0.91354 0.89369 0.79919 0.85323 0.87300 0.87993 0.87635 0.88060 0.90540 0.90850 0.89387 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -13.74 8.39 -34.44 -0.29 -14.03 16 8 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 10 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 11 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 12 C 0.11 1.67 6.43 -3.71 -0.02 1.64 16 13 N -0.59 -8.87 2.98 -174.57 -0.52 -9.39 16 14 C 0.59 9.31 7.57 -12.85 -0.10 9.21 16 15 O -0.53 -9.74 16.52 5.20 0.09 -9.66 16 16 C -0.29 -3.89 5.53 -37.10 -0.21 -4.09 16 17 C 0.11 1.45 11.30 -18.85 -0.21 1.23 16 18 N -0.48 -5.95 9.98 -11.50 -0.11 -6.07 16 19 C 0.07 0.78 6.96 -13.29 -0.09 0.69 16 20 C -0.10 -0.81 6.28 -91.78 -0.58 -1.39 16 21 C -0.15 -1.05 10.12 -26.73 -0.27 -1.32 16 22 C -0.15 -1.08 10.23 -26.73 -0.27 -1.35 16 23 S 0.20 2.09 19.96 -107.50 -2.15 -0.06 16 24 C 0.09 1.29 5.88 -3.93 -0.02 1.26 16 25 C -0.12 -1.99 5.17 -26.83 -0.14 -2.13 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.31 7.02 -51.92 -0.36 0.94 16 34 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.11 0.92 7.84 -51.93 -0.41 0.51 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.98 3.95 -29.74 -0.12 0.86 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.58 6.91 -51.93 -0.36 1.22 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -31.49 361.67 -10.54 -42.03 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.25 Total: -0.46 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.76 Total: -12.23 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.10 Total: -40.99 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.15 Total: -0.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.49 -10.54 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570572391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.241 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds