Wall clock time and date at job start Tue Mar 31 2020 12:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48497 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46951 * 300.00058 * 3 2 1 6 6 H 1.48505 * 109.47114 * 59.99962 * 3 2 1 7 7 C 1.37881 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46847 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46105 * 184.99820 * 10 9 7 12 12 C 1.53194 * 109.31311 * 178.61467 * 11 10 9 13 13 N 1.46927 * 108.77405 * 54.63652 * 12 11 10 14 14 C 1.34777 * 120.62770 * 126.36861 * 13 12 11 15 15 O 1.21687 * 120.00367 * 3.84428 * 14 13 12 16 16 C 1.46681 * 119.99879 * 183.56948 * 14 13 12 17 17 C 1.35664 * 126.12908 * 135.96792 * 16 14 13 18 18 N 1.30949 * 114.18950 * 179.82712 * 17 16 14 19 19 C 1.29427 * 117.36095 * 0.48429 * 18 17 16 20 20 C 1.50703 * 124.80126 * 179.70762 * 19 18 17 21 21 C 1.52992 * 117.49937 * 8.65276 * 20 19 18 22 22 C 1.52995 * 117.49966 * 300.02411 * 20 19 18 23 23 S 1.70954 * 110.39418 * 359.73111 * 19 18 17 24 24 C 1.46916 * 118.73979 * 306.64121 * 13 12 11 25 25 C 1.52768 * 109.00833 * 53.30884 * 24 13 12 26 26 H 0.97004 * 120.00092 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47111 * 59.99927 * 9 7 2 28 28 H 1.08995 * 109.47293 * 299.99288 * 9 7 2 29 29 H 1.09003 * 109.45077 * 304.96677 * 10 9 7 30 30 H 1.09004 * 109.49850 * 58.66355 * 11 10 9 31 31 H 1.09001 * 109.49785 * 298.56731 * 11 10 9 32 32 H 1.09001 * 109.58905 * 294.84903 * 12 11 10 33 33 H 1.09009 * 109.70073 * 174.49398 * 12 11 10 34 34 H 1.07996 * 122.90305 * 0.02738 * 17 16 14 35 35 H 1.09001 * 115.54927 * 154.35619 * 20 19 18 36 36 H 1.09006 * 117.50115 * 359.97438 * 21 20 19 37 37 H 1.08999 * 117.50183 * 145.01885 * 21 20 19 38 38 H 1.08996 * 117.50068 * 214.97265 * 22 20 19 39 39 H 1.08995 * 117.49880 * 359.97438 * 22 20 19 40 40 H 1.09000 * 109.58980 * 173.14548 * 24 13 12 41 41 H 1.09004 * 109.58667 * 293.57176 * 24 13 12 42 42 H 1.09000 * 109.56384 * 185.55196 * 25 24 13 43 43 H 1.08996 * 109.35545 * 65.50234 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4840 -4.9837 -0.1252 12 6 2.4844 -6.1433 -0.1597 13 7 3.3505 -6.0560 1.0240 14 6 3.4916 -7.1110 1.8509 15 8 2.9550 -8.1699 1.5833 16 6 4.2970 -6.9845 3.0702 17 6 3.9629 -7.4470 4.3011 18 7 4.8591 -7.2082 5.2255 19 6 5.9256 -6.5675 4.8687 20 6 7.0574 -6.1992 5.7930 21 6 7.0343 -6.7846 7.2063 22 6 6.7301 -5.3011 6.9876 23 16 5.8683 -6.1976 3.2006 24 6 4.0549 -4.7950 1.2925 25 6 3.0412 -3.6522 1.3076 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.9288 -3.5552 -0.8418 30 1 0.8989 -4.9805 -1.0449 31 1 0.8182 -5.1028 0.7296 32 1 3.0915 -6.0755 -1.0624 33 1 1.9477 -7.0921 -0.1507 34 1 3.0393 -7.9699 4.5005 35 1 8.0296 -6.0697 5.3175 36 1 6.2002 -7.4358 7.4678 37 1 7.9913 -7.0405 7.6609 38 1 7.4872 -4.5811 7.2983 39 1 5.6963 -4.9763 7.1048 40 1 4.5524 -4.8532 2.2606 41 1 4.7927 -4.6150 0.5105 42 1 3.5646 -2.7014 1.4077 43 1 2.3609 -3.7839 2.1489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570572391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:37 Heat of formation + Delta-G solvation = 6.680148 kcal Electronic energy + Delta-G solvation = -24267.616079 eV Core-core repulsion = 20825.168418 eV Total energy + Delta-G solvation = -3442.447660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59092 -40.69818 -38.79583 -37.76134 -35.77085 -34.10326 -32.58651 -31.29097 -29.85883 -27.75319 -26.32978 -24.53106 -24.09120 -23.30552 -23.23973 -22.04473 -20.83269 -19.59562 -19.40946 -18.41732 -17.98485 -17.43265 -16.74859 -16.53376 -16.41514 -15.67882 -15.52068 -15.31369 -15.18694 -15.08987 -14.60095 -14.52230 -14.25557 -13.94414 -13.46967 -13.20123 -13.02896 -12.82343 -12.67047 -12.55782 -12.37201 -12.32398 -12.23921 -11.86117 -11.77753 -11.66662 -11.42517 -11.28003 -11.13781 -10.86846 -10.74730 -10.53771 -10.26956 -9.86930 -9.70416 -8.15581 -6.25083 -0.80339 -0.01331 0.43972 1.32970 1.42107 1.43216 1.55218 1.67323 1.98938 2.43728 2.83965 3.02450 3.18628 3.37408 3.73050 3.78675 3.89794 3.98641 4.03928 4.05625 4.10961 4.18942 4.30588 4.33185 4.43568 4.60079 4.72100 4.81857 4.83814 4.87419 4.91319 4.97182 5.04608 5.15618 5.25547 5.29357 5.30470 5.34640 5.46752 5.56802 5.80084 5.89628 6.15461 6.29577 6.52706 6.84473 6.92203 7.43962 8.96620 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003440 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.035483 B = 8136.786927 C = 9747.772108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.073 4.073 11 C -0.123 4.123 12 C 0.120 3.880 13 N -0.597 5.597 14 C 0.595 3.405 15 O -0.567 6.567 16 C -0.320 4.320 17 C 0.110 3.890 18 N -0.498 5.498 19 C 0.075 3.925 20 C -0.115 4.115 21 C -0.145 4.145 22 C -0.148 4.148 23 S 0.240 5.760 24 C 0.101 3.899 25 C -0.111 4.111 26 H 0.260 0.740 27 H -0.012 1.012 28 H -0.017 1.017 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.184 0.816 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.208 -12.316 10.113 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.178 1.178 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.088 0.912 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.161 4.161 12 C -0.002 4.002 13 N -0.328 5.328 14 C 0.382 3.618 15 O -0.448 6.448 16 C -0.444 4.444 17 C -0.048 4.048 18 N -0.213 5.213 19 C -0.198 4.198 20 C -0.137 4.137 21 C -0.184 4.184 22 C -0.187 4.187 23 S 0.500 5.500 24 C -0.022 4.022 25 C -0.149 4.149 26 H 0.069 0.931 27 H 0.007 0.993 28 H 0.001 0.999 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.201 0.799 35 H 0.174 0.826 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.456 -12.387 9.759 24.275 hybrid contribution -1.560 0.527 0.044 1.647 sum 16.896 -11.860 9.803 22.852 Atomic orbital electron populations 1.70121 1.07961 1.27414 1.52432 1.25975 0.95613 1.03333 0.95218 0.85477 0.79556 0.79163 0.77344 1.17809 1.20982 1.20980 1.21706 0.93717 0.91693 1.49156 0.91228 1.19015 0.94024 0.93137 0.94284 1.21049 0.97114 0.93536 0.97419 1.21933 0.97730 0.94340 1.02090 1.21710 0.92339 0.99311 0.86823 1.48126 1.46459 1.12552 1.25667 1.17023 0.79745 0.83439 0.81573 1.90788 1.50922 1.28462 1.74610 1.25585 1.03726 1.15443 0.99694 1.22121 0.99477 0.97175 0.85977 1.66158 1.02459 1.16862 1.35799 1.27162 0.97355 0.97354 0.97948 1.20904 0.94908 1.08985 0.88901 1.23079 1.04655 0.96359 0.94274 1.23142 1.03459 0.94433 0.97634 1.83746 1.11637 1.48484 1.06110 1.22210 0.94915 0.82002 1.03084 1.21686 0.97641 0.98140 0.97440 0.93108 0.99343 0.99887 0.91228 0.90303 0.93598 0.89065 0.89559 0.79915 0.82613 0.89163 0.85476 0.85156 0.89830 0.89153 0.88437 0.89986 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 4 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.52 -27.99 8.39 25.60 0.21 -27.78 16 8 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 9 C 0.03 1.63 4.45 29.85 0.13 1.76 16 10 C -0.07 -2.72 2.10 -10.77 -0.02 -2.74 16 11 C -0.12 -4.04 5.36 30.67 0.16 -3.87 16 12 C 0.12 3.37 6.43 86.36 0.55 3.92 16 13 N -0.60 -17.08 2.98 -824.43 -2.46 -19.54 16 14 C 0.60 18.35 7.57 86.45 0.65 19.00 16 15 O -0.57 -20.81 16.52 -4.31 -0.07 -20.88 16 16 C -0.32 -8.43 5.53 23.88 0.13 -8.30 16 17 C 0.11 2.85 11.30 84.23 0.95 3.80 16 18 N -0.50 -12.06 9.98 -190.29 -1.90 -13.96 16 19 C 0.07 1.47 6.96 88.46 0.62 2.09 16 20 C -0.12 -1.50 6.28 -11.54 -0.07 -1.57 16 21 C -0.14 -1.69 10.12 30.59 0.31 -1.38 16 22 C -0.15 -1.71 10.23 30.59 0.31 -1.39 16 23 S 0.24 4.59 19.96 -56.49 -1.13 3.46 16 24 C 0.10 2.60 5.88 86.22 0.51 3.11 16 25 C -0.11 -3.70 5.17 30.53 0.16 -3.54 16 26 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 27 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.51 7.02 -2.38 -0.02 2.50 16 34 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.43 7.84 -2.38 -0.02 1.41 16 37 H 0.13 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 2.10 3.95 -16.49 -0.07 2.04 16 41 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.08 2.84 6.91 -2.39 -0.02 2.82 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.73 361.67 2.79 -66.94 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.96 Total: 12.06 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.08 Total: -16.66 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -4.07 Total: -89.70 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.07 Total: -20.88 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.13 Total: 3.46 kcal Total: -69.73 2.79 -66.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570572391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.621 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds